Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:99463659-100193660

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Renf1 9 52123178 to 99910428 47787250 QTL renal failure 1
Loh1 9 98798268 to 99910428 1112160 heritable phenotypic marker loss of heterozygosity, region 1
Nme9 9 99451475 to 99474751 23276 + protein coding gene NME/NM23 family member 9
1600029I14Rik 9 99470421 to 99474751 4330 + lncRNA gene RIKEN cDNA 1600029I14 gene
Armc8 9 99478372 to 99568899 90527 - protein coding gene armadillo repeat containing 8
Tssr91071 9 99499482 to 99499514 32 - TSS region transcription start site region 91071
Cpgi22196 9 99568113 to 99569086 973 CpG island CpG island 22196
Tssr91072 9 99568640 to 99568678 38 - TSS region transcription start site region 91072
Tssr91073 9 99568849 to 99568911 62 - TSS region transcription start site region 91073
Cpgi22197 9 99575614 to 99576310 696 CpG island CpG island 22197
Dbr1 9 99575775 to 99584461 8686 + protein coding gene debranching RNA lariats 1
Tssr86684 9 99575776 to 99575829 53 + TSS region transcription start site region 86684
Tssr86685 9 99612468 to 99612529 61 + TSS region transcription start site region 86685
A4gnt 9 99612502 to 99622367 9865 + protein coding gene alpha-1,4-N-acetylglucosaminyltransferase
Tssr86686 9 99612545 to 99612557 12 + TSS region transcription start site region 86686
Dzip1l 9 99629496 to 99669256 39760 + protein coding gene DAZ interacting protein 1-like
Tssr86687 9 99629531 to 99629592 61 + TSS region transcription start site region 86687
Cpgi22198 9 99629549 to 99630121 572 CpG island CpG island 22198
Tssr86688 9 99629823 to 99629853 30 + TSS region transcription start site region 86688
Tssr86689 9 99629855 to 99629876 21 + TSS region transcription start site region 86689
Tssr86690 9 99632643 to 99632658 15 + TSS region transcription start site region 86690
Cldn18 9 99690796 to 99717267 26471 - protein coding gene claudin 18
Tssr91074 9 99691684 to 99691687 3 - TSS region transcription start site region 91074
Tssr91075 9 99692179 to 99692204 25 - TSS region transcription start site region 91075
Tssr91076 9 99692487 to 99692503 16 - TSS region transcription start site region 91076
Tssr91077 9 99692570 to 99692582 12 - TSS region transcription start site region 91077
Gm16004 9 99708399 to 99756043 47644 + antisense lncRNA gene predicted gene 16004
Tssr91078 9 99709952 to 99709988 36 - TSS region transcription start site region 91078
Tssr91079 9 99710005 to 99710022 17 - TSS region transcription start site region 91079
Tssr91080 9 99710069 to 99710085 16 - TSS region transcription start site region 91080
Cpgi22199 9 99717155 to 99717319 164 CpG island CpG island 22199
Tssr91081 9 99717259 to 99717274 15 - TSS region transcription start site region 91081
Cpgi22200 9 99730525 to 99730804 279 CpG island CpG island 22200
Gm23949 9 99750391 to 99750517 126 - snoRNA gene predicted gene, 23949
D9Dcr35 9 99769382 to 99769477 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 35
D9Dcr36 9 99789404 to 99789509 105 DNA segment DNA segment, Chr 9, Derry C. Roopenian 36
Gm518 9 99823289 to 99849089 25800 + pseudogene predicted pseudogene 518
Tssr86691 9 99828659 to 99828660 1 + TSS region transcription start site region 86691
Gm47757 9 99848283 to 99858313 10030 - lincRNA gene predicted gene, 47757
Tssr86692 9 99856090 to 99856095 5 + TSS region transcription start site region 86692
Tssr91082 9 99858856 to 99858885 29 - TSS region transcription start site region 91082
Acigg11 9 99865901 to 99865901 0 QTL anti COL7 IgG3 antibody 11
Cpgi22201 9 99868681 to 99869906 1225 CpG island CpG island 22201
Cpgi22202 9 99869915 to 99870207 292 CpG island CpG island 22202
Cpgi22203 9 99870493 to 99870967 474 CpG island CpG island 22203
D9Dcr37 9 99871170 to 99871266 96 DNA segment DNA segment, Chr 9, Derry C. Roopenian 37
Cpgi22204 9 99871276 to 99872119 843 CpG island CpG island 22204
1700024K11Rik 9 99872256 to 99872604 348 unclassified gene RIKEN cDNA 1700024K11 gene
Sox14 9 99874106 to 99876170 2064 - protein coding gene SRY (sex determining region Y)-box 14
Cpgi22205 9 99874859 to 99876470 1611 CpG island CpG island 22205
Tssr91083 9 99876147 to 99876193 46 - TSS region transcription start site region 91083
Tssr91084 9 99876198 to 99876212 14 - TSS region transcription start site region 91084
Char10 9 99910333 to 99910428 95 QTL P. chabaudi malaria resistance QTL 10
D9Mit12 9 99910333 to 99910428 95 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 12
Idd2 9 99910333 to 99910428 95 QTL insulin dependent diabetes susceptibility 2
Sluc11 9 99910333 to 99910428 95 QTL susceptibility to lung cancer 11
Gm23594 9 99943709 to 99943842 133 + snoRNA gene predicted gene, 23594
Gm8641 9 99946564 to 99947389 825 - pseudogene predicted gene 8641
Cpgi22206 9 99947382 to 99947542 160 CpG island CpG island 22206
4930519F24Rik 9 100022300 to 100034670 12370 + lincRNA gene RIKEN cDNA 4930519F24 gene
Tssr86693 9 100022305 to 100022316 11 + TSS region transcription start site region 86693
Tssr86694 9 100022317 to 100022327 10 + TSS region transcription start site region 86694
4930540E01Rik 9 100173001 to 100174146 1145 - lncRNA gene RIKEN cDNA 4930540E01 gene
D9Mit183 9 100176876 to 100177012 136 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 183