Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:99156583-99716609

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm18790 9 99158138 to 99158684 546 - pseudogene predicted gene, 18790
Tssr91045 9 99158451 to 99158454 3 - TSS region transcription start site region 91045
D9Dcr33 9 99160163 to 99160262 99 DNA segment DNA segment, Chr 9, Derry C. Roopenian 33
Gm33857 9 99161047 to 99176021 14974 + lncRNA gene predicted gene, 33857
D9Mit136 9 99169485 to 99169634 149 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 136
D9Dcr34 9 99169538 to 99169625 87 DNA segment DNA segment, Chr 9, Derry C. Roopenian 34
Tssr86676 9 99183553 to 99183598 45 + TSS region transcription start site region 86676
Tssr86677 9 99183618 to 99183643 25 + TSS region transcription start site region 86677
Gm2950 9 99220048 to 99220567 519 - pseudogene predicted gene 2950
Faiml 9 99229376 to 99237239 7863 - protein coding gene Fas apoptotic inhibitory molecule like
Tssr91046 9 99237222 to 99237245 23 - TSS region transcription start site region 91046
Gm38327 9 99241851 to 99243605 1754 - unclassified gene predicted gene, 38327
Cpgi22192 9 99243047 to 99243906 859 CpG island CpG island 22192
Cep70 9 99243367 to 99300404 57037 + protein coding gene centrosomal protein 70
Tssr86678 9 99243421 to 99243474 53 + TSS region transcription start site region 86678
Tssr86679 9 99243683 to 99243741 58 + TSS region transcription start site region 86679
Tssr86680 9 99247069 to 99247075 6 + TSS region transcription start site region 86680
Gm47199 9 99259475 to 99260207 732 - pseudogene predicted gene, 47199
Gm18914 9 99260945 to 99261560 615 - pseudogene predicted gene, 18914
4930422M22Rik 9 99304521 to 99306279 1758 - antisense lncRNA gene RIKEN cDNA 4930422M22 gene
Tssr91047 9 99304706 to 99304715 9 - TSS region transcription start site region 91047
Tssr91048 9 99304723 to 99304741 18 - TSS region transcription start site region 91048
Tssr91049 9 99304752 to 99304758 6 - TSS region transcription start site region 91049
Tssr86681 9 99304840 to 99304882 42 + TSS region transcription start site region 86681
Gm37249 9 99307583 to 99310451 2868 + unclassified non-coding RNA gene predicted gene, 37249
Esyt3 9 99309963 to 99358557 48594 - protein coding gene extended synaptotagmin-like protein 3
Gm46127 9 99319654 to 99322615 2961 + lncRNA gene predicted gene, 46127
Tssr91050 9 99322667 to 99322679 12 - TSS region transcription start site region 91050
1700008A23Rik 9 99322826 to 99323516 690 + unclassified gene RIKEN cDNA 1700008A23 gene
Cpgi22193 9 99357627 to 99358705 1078 CpG island CpG island 22193
Tssr91051 9 99358518 to 99358552 34 - TSS region transcription start site region 91051
Gm28087 9 99367033 to 99368490 1457 + lincRNA gene predicted gene 28087
Cpgi22194 9 99369019 to 99369216 197 CpG island CpG island 22194
Mras 9 99385420 to 99436964 51544 - protein coding gene muscle and microspikes RAS
Tssr91052 9 99396525 to 99396536 11 - TSS region transcription start site region 91052
Tssr91053 9 99408215 to 99408220 5 - TSS region transcription start site region 91053
Tssr91054 9 99411194 to 99411240 46 - TSS region transcription start site region 91054
Tssr91055 9 99411824 to 99411870 46 - TSS region transcription start site region 91055
Tssr91056 9 99420247 to 99420257 10 - TSS region transcription start site region 91056
Tssr91057 9 99420265 to 99420276 11 - TSS region transcription start site region 91057
Tssr91058 9 99420322 to 99420334 12 - TSS region transcription start site region 91058
Tssr91059 9 99420370 to 99420394 24 - TSS region transcription start site region 91059
Tssr91060 9 99423094 to 99423137 43 - TSS region transcription start site region 91060
Tssr91061 9 99426132 to 99426134 2 - TSS region transcription start site region 91061
Cpgi22195 9 99435967 to 99437193 1226 CpG island CpG island 22195
Tssr91062 9 99436470 to 99436533 63 - TSS region transcription start site region 91062
Tssr91063 9 99436548 to 99436562 14 - TSS region transcription start site region 91063
Tssr91064 9 99436583 to 99436609 26 - TSS region transcription start site region 91064
Tssr91065 9 99436613 to 99436622 9 - TSS region transcription start site region 91065
Tssr91066 9 99436629 to 99436641 12 - TSS region transcription start site region 91066
Tssr91067 9 99436647 to 99436681 34 - TSS region transcription start site region 91067
Tssr91068 9 99436687 to 99436733 46 - TSS region transcription start site region 91068
Tssr91069 9 99436749 to 99436760 11 - TSS region transcription start site region 91069
Gm39412 9 99437014 to 99437708 694 + lncRNA gene predicted gene, 39412
Tssr91070 9 99437555 to 99437564 9 - TSS region transcription start site region 91070
Tssr86682 9 99451422 to 99451436 14 + TSS region transcription start site region 86682
Tssr86683 9 99451437 to 99451453 16 + TSS region transcription start site region 86683
Nme9 9 99451475 to 99474751 23276 + protein coding gene NME/NM23 family member 9
1600029I14Rik 9 99470421 to 99474751 4330 + lncRNA gene RIKEN cDNA 1600029I14 gene
Armc8 9 99478372 to 99568899 90527 - protein coding gene armadillo repeat containing 8
Tssr91071 9 99499482 to 99499514 32 - TSS region transcription start site region 91071
Cpgi22196 9 99568113 to 99569086 973 CpG island CpG island 22196
Tssr91072 9 99568640 to 99568678 38 - TSS region transcription start site region 91072
Tssr91073 9 99568849 to 99568911 62 - TSS region transcription start site region 91073
Cpgi22197 9 99575614 to 99576310 696 CpG island CpG island 22197
Dbr1 9 99575775 to 99584461 8686 + protein coding gene debranching RNA lariats 1
Tssr86684 9 99575776 to 99575829 53 + TSS region transcription start site region 86684
Tssr86685 9 99612468 to 99612529 61 + TSS region transcription start site region 86685
A4gnt 9 99612502 to 99622367 9865 + protein coding gene alpha-1,4-N-acetylglucosaminyltransferase
Tssr86686 9 99612545 to 99612557 12 + TSS region transcription start site region 86686
Dzip1l 9 99629496 to 99669256 39760 + protein coding gene DAZ interacting protein 1-like
Tssr86687 9 99629531 to 99629592 61 + TSS region transcription start site region 86687
Cpgi22198 9 99629549 to 99630121 572 CpG island CpG island 22198
Tssr86688 9 99629823 to 99629853 30 + TSS region transcription start site region 86688
Tssr86689 9 99629855 to 99629876 21 + TSS region transcription start site region 86689
Tssr86690 9 99632643 to 99632658 15 + TSS region transcription start site region 86690
Cldn18 9 99690796 to 99717267 26471 - protein coding gene claudin 18
Tssr91074 9 99691684 to 99691687 3 - TSS region transcription start site region 91074
Tssr91075 9 99692179 to 99692204 25 - TSS region transcription start site region 91075
Tssr91076 9 99692487 to 99692503 16 - TSS region transcription start site region 91076
Tssr91077 9 99692570 to 99692582 12 - TSS region transcription start site region 91077
Gm16004 9 99708399 to 99756043 47644 + antisense lncRNA gene predicted gene 16004
Tssr91078 9 99709952 to 99709988 36 - TSS region transcription start site region 91078
Tssr91079 9 99710005 to 99710022 17 - TSS region transcription start site region 91079
Tssr91080 9 99710069 to 99710085 16 - TSS region transcription start site region 91080