Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:99020945-99501560

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm1123 9 99006965 to 99035690 28725 - protein coding gene predicted gene 1123
D9Mit199 9 99020903 to 99021041 138 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 199
D9Dcr31 9 99022716 to 99022810 94 DNA segment DNA segment, Chr 9, Derry C. Roopenian 31
Tssr2986 9 99035633 to 99035642 9 - TSS region transcription start site region 2986
Tssr91038 9 99035647 to 99035676 29 - TSS region transcription start site region 91038
Tssr91039 9 99035679 to 99035718 39 - TSS region transcription start site region 91039
Tssr91040 9 99035733 to 99035751 18 - TSS region transcription start site region 91040
Tssr2987 9 99035756 to 99035769 13 - TSS region transcription start site region 2987
Pik3cb 9 99038402 to 99140211 101809 - protein coding gene phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta
Gm2773 9 99116493 to 99140622 24129 + pseudogene predicted gene 2773
Tssr91041 9 99136103 to 99136106 3 - TSS region transcription start site region 91041
Cpgi22191 9 99139460 to 99140781 1321 CpG island CpG island 22191
Tssr86675 9 99139513 to 99139530 17 + TSS region transcription start site region 86675
Tssr91042 9 99140065 to 99140080 15 - TSS region transcription start site region 91042
Tssr91043 9 99140110 to 99140124 14 - TSS region transcription start site region 91043
Tssr91044 9 99140147 to 99140226 79 - TSS region transcription start site region 91044
D9Dcr32 9 99154763 to 99154858 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 32
Gm18790 9 99158138 to 99158684 546 - pseudogene predicted gene, 18790
Tssr91045 9 99158451 to 99158454 3 - TSS region transcription start site region 91045
D9Dcr33 9 99160163 to 99160262 99 DNA segment DNA segment, Chr 9, Derry C. Roopenian 33
Gm33857 9 99161047 to 99176021 14974 + lncRNA gene predicted gene, 33857
D9Mit136 9 99169485 to 99169634 149 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 136
D9Dcr34 9 99169538 to 99169625 87 DNA segment DNA segment, Chr 9, Derry C. Roopenian 34
Tssr86676 9 99183553 to 99183598 45 + TSS region transcription start site region 86676
Tssr86677 9 99183618 to 99183643 25 + TSS region transcription start site region 86677
Gm2950 9 99220048 to 99220567 519 - pseudogene predicted gene 2950
Faiml 9 99229376 to 99237239 7863 - protein coding gene Fas apoptotic inhibitory molecule like
Tssr91046 9 99237222 to 99237245 23 - TSS region transcription start site region 91046
Gm38327 9 99241851 to 99243605 1754 - unclassified gene predicted gene, 38327
Cpgi22192 9 99243047 to 99243906 859 CpG island CpG island 22192
Cep70 9 99243367 to 99300404 57037 + protein coding gene centrosomal protein 70
Tssr86678 9 99243421 to 99243474 53 + TSS region transcription start site region 86678
Tssr86679 9 99243683 to 99243741 58 + TSS region transcription start site region 86679
Tssr86680 9 99247069 to 99247075 6 + TSS region transcription start site region 86680
Gm47199 9 99259475 to 99260207 732 - pseudogene predicted gene, 47199
Gm18914 9 99260945 to 99261560 615 - pseudogene predicted gene, 18914
4930422M22Rik 9 99304521 to 99306279 1758 - antisense lncRNA gene RIKEN cDNA 4930422M22 gene
Tssr91047 9 99304706 to 99304715 9 - TSS region transcription start site region 91047
Tssr91048 9 99304723 to 99304741 18 - TSS region transcription start site region 91048
Tssr91049 9 99304752 to 99304758 6 - TSS region transcription start site region 91049
Tssr86681 9 99304840 to 99304882 42 + TSS region transcription start site region 86681
Gm37249 9 99307583 to 99310451 2868 + unclassified non-coding RNA gene predicted gene, 37249
Esyt3 9 99309963 to 99358557 48594 - protein coding gene extended synaptotagmin-like protein 3
Gm46127 9 99319654 to 99322615 2961 + lncRNA gene predicted gene, 46127
Tssr91050 9 99322667 to 99322679 12 - TSS region transcription start site region 91050
1700008A23Rik 9 99322826 to 99323516 690 + unclassified gene RIKEN cDNA 1700008A23 gene
Cpgi22193 9 99357627 to 99358705 1078 CpG island CpG island 22193
Tssr91051 9 99358518 to 99358552 34 - TSS region transcription start site region 91051
Gm28087 9 99367033 to 99368490 1457 + lincRNA gene predicted gene 28087
Cpgi22194 9 99369019 to 99369216 197 CpG island CpG island 22194
Mras 9 99385420 to 99436964 51544 - protein coding gene muscle and microspikes RAS
Tssr91052 9 99396525 to 99396536 11 - TSS region transcription start site region 91052
Tssr91053 9 99408215 to 99408220 5 - TSS region transcription start site region 91053
Tssr91054 9 99411194 to 99411240 46 - TSS region transcription start site region 91054
Tssr91055 9 99411824 to 99411870 46 - TSS region transcription start site region 91055
Tssr91056 9 99420247 to 99420257 10 - TSS region transcription start site region 91056
Tssr91057 9 99420265 to 99420276 11 - TSS region transcription start site region 91057
Tssr91058 9 99420322 to 99420334 12 - TSS region transcription start site region 91058
Tssr91059 9 99420370 to 99420394 24 - TSS region transcription start site region 91059
Tssr91060 9 99423094 to 99423137 43 - TSS region transcription start site region 91060
Tssr91061 9 99426132 to 99426134 2 - TSS region transcription start site region 91061
Cpgi22195 9 99435967 to 99437193 1226 CpG island CpG island 22195
Tssr91062 9 99436470 to 99436533 63 - TSS region transcription start site region 91062
Tssr91063 9 99436548 to 99436562 14 - TSS region transcription start site region 91063
Tssr91064 9 99436583 to 99436609 26 - TSS region transcription start site region 91064
Tssr91065 9 99436613 to 99436622 9 - TSS region transcription start site region 91065
Tssr91066 9 99436629 to 99436641 12 - TSS region transcription start site region 91066
Tssr91067 9 99436647 to 99436681 34 - TSS region transcription start site region 91067
Tssr91068 9 99436687 to 99436733 46 - TSS region transcription start site region 91068
Tssr91069 9 99436749 to 99436760 11 - TSS region transcription start site region 91069
Gm39412 9 99437014 to 99437708 694 + lncRNA gene predicted gene, 39412
Tssr91070 9 99437555 to 99437564 9 - TSS region transcription start site region 91070
Tssr86682 9 99451422 to 99451436 14 + TSS region transcription start site region 86682
Tssr86683 9 99451437 to 99451453 16 + TSS region transcription start site region 86683
Nme9 9 99451475 to 99474751 23276 + protein coding gene NME/NM23 family member 9
1600029I14Rik 9 99470421 to 99474751 4330 + lncRNA gene RIKEN cDNA 1600029I14 gene
Armc8 9 99478372 to 99568899 90527 - protein coding gene armadillo repeat containing 8
Tssr91071 9 99499482 to 99499514 32 - TSS region transcription start site region 91071