Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:98891965-99150690

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43 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
7420426K07Rik 9 98903119 to 98904622 1503 + protein coding gene RIKEN cDNA 7420426K07 gene
Gm33778 9 98918978 to 98919681 703 + protein coding gene predicted gene, 33778
Gm28266 9 98925174 to 98925612 438 - pseudogene predicted gene 28266
Foxl2os 9 98949781 to 98955299 5518 - lncRNA gene forkhead box L2, opposite strand
Cpgi22184 9 98952137 to 98952684 547 CpG island CpG island 22184
Cpgi22185 9 98954491 to 98957465 2974 CpG island CpG island 22185
Tssr91033 9 98954782 to 98954803 21 - TSS region transcription start site region 91033
Tssr86667 9 98955273 to 98955291 18 + TSS region transcription start site region 86667
Tssr91034 9 98955302 to 98955313 11 - TSS region transcription start site region 91034
Tssr91035 9 98955340 to 98955348 8 - TSS region transcription start site region 91035
Tssr86668 9 98955428 to 98955447 19 + TSS region transcription start site region 86668
Tssr86669 9 98955449 to 98955476 27 + TSS region transcription start site region 86669
Tssr86670 9 98955525 to 98955552 27 + TSS region transcription start site region 86670
Foxl2 9 98955607 to 98958126 2519 + protein coding gene forkhead box L2
Tssr91036 9 98957293 to 98957296 3 - TSS region transcription start site region 91036
Cpgi22186 9 98962792 to 98962971 179 CpG island CpG island 22186
Cpgi22187 9 98963703 to 98963872 169 CpG island CpG island 22187
Cpgi22188 9 98965110 to 98965378 268 CpG island CpG island 22188
Cpgi22189 9 98972940 to 98973557 617 CpG island CpG island 22189
Cpgi22190 9 98986002 to 98987003 1001 CpG island CpG island 22190
Tssr86671 9 98986365 to 98986412 47 + TSS region transcription start site region 86671
Faim 9 98986373 to 99002019 15646 + protein coding gene Fas apoptotic inhibitory molecule
Tssr86672 9 98986420 to 98986431 11 + TSS region transcription start site region 86672
Tssr86673 9 98986432 to 98986468 36 + TSS region transcription start site region 86673
D9Mit356 9 98989258 to 98989373 115 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 356
Tssr86674 9 98991778 to 98991821 43 + TSS region transcription start site region 86674
Gm1123 9 99006965 to 99035690 28725 - protein coding gene predicted gene 1123
Tssr91037 9 99017844 to 99017862 18 - TSS region transcription start site region 91037
D9Mit199 9 99020903 to 99021041 138 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 199
D9Dcr31 9 99022716 to 99022810 94 DNA segment DNA segment, Chr 9, Derry C. Roopenian 31
Tssr2986 9 99035633 to 99035642 9 - TSS region transcription start site region 2986
Tssr91038 9 99035647 to 99035676 29 - TSS region transcription start site region 91038
Tssr91039 9 99035679 to 99035718 39 - TSS region transcription start site region 91039
Tssr91040 9 99035733 to 99035751 18 - TSS region transcription start site region 91040
Tssr2987 9 99035756 to 99035769 13 - TSS region transcription start site region 2987
Pik3cb 9 99038402 to 99140211 101809 - protein coding gene phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta
Gm2773 9 99116493 to 99140622 24129 + pseudogene predicted gene 2773
Tssr91041 9 99136103 to 99136106 3 - TSS region transcription start site region 91041
Cpgi22191 9 99139460 to 99140781 1321 CpG island CpG island 22191
Tssr86675 9 99139513 to 99139530 17 + TSS region transcription start site region 86675
Tssr91042 9 99140065 to 99140080 15 - TSS region transcription start site region 91042
Tssr91043 9 99140110 to 99140124 14 - TSS region transcription start site region 91043
Tssr91044 9 99140147 to 99140226 79 - TSS region transcription start site region 91044