Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:98722503-98963385

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46 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Alpq3 9 37394901 to 98819654 61424753 QTL alcohol preference QTL 3
Habiir4 9 69360465 to 98819654 29459189 QTL hyperoxic acute lung injury imprinted region 4
D9Mit275 9 98732427 to 98732545 118 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 275
E330023G01Rik 9 98748599 to 98820087 71488 - lincRNA gene RIKEN cDNA E330023G01 gene
Gm39411 9 98749745 to 98751290 1545 + lncRNA gene predicted gene, 39411
Gm37282 9 98767653 to 98767816 163 - unclassified gene predicted gene, 37282
Gm37917 9 98767930 to 98768321 391 + unclassified gene predicted gene, 37917
Gm38226 9 98771105 to 98771625 520 + unclassified gene predicted gene, 38226
Gm33563 9 98771622 to 98779175 7553 + lncRNA gene predicted gene, 33563
D9Mit35.1 9 98798185 to 98798303 118 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 35.1
D9Mit35 9 98798268 to 98798392 124 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 35
Loh1 9 98798268 to 99910428 1112160 heritable phenotypic marker loss of heterozygosity, region 1
Char1 9 98798268 to 98798392 124 QTL P. chabaudi malaria resistance QTL 1
D9Dcr29 9 98798283 to 98798386 103 DNA segment DNA segment, Chr 9, Derry C. Roopenian 29
D9Mit35.2 9 98798372 to 98798484 112 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 35.2
Gm33644 9 98805480 to 98807937 2457 - lncRNA gene predicted gene, 33644
D9Mit114 9 98813841 to 98813996 155 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 114
D9Mit355 9 98819535 to 98819654 119 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 355
D9Dcr30 9 98819536 to 98819657 121 DNA segment DNA segment, Chr 9, Derry C. Roopenian 30
Cpgi22181 9 98842271 to 98842789 518 CpG island CpG island 22181
Prr23a1 9 98842503 to 98843385 882 + protein coding gene proline rich 23A, member 1
Cpgi22182 9 98856379 to 98856657 278 CpG island CpG island 22182
Prr23a2 9 98856591 to 98857352 761 + protein coding gene proline rich 23A, member 2
Tssr86665 9 98864743 to 98864803 60 + TSS region transcription start site region 86665
Prr23a3 9 98864767 to 98866580 1813 + protein coding gene proline rich 23A, member 3
Cpgi22183 9 98864862 to 98865228 366 CpG island CpG island 22183
Tssr86666 9 98864868 to 98864894 26 + TSS region transcription start site region 86666
Gm5920 9 98873064 to 98873916 852 - pseudogene predicted gene 5920
Tssr91032 9 98873926 to 98873930 4 - TSS region transcription start site region 91032
Gm33700 9 98888211 to 98888907 696 + protein coding gene predicted gene, 33700
7420426K07Rik 9 98903119 to 98904622 1503 + protein coding gene RIKEN cDNA 7420426K07 gene
Gm33778 9 98918978 to 98919681 703 + protein coding gene predicted gene, 33778
Gm28266 9 98925174 to 98925612 438 - pseudogene predicted gene 28266
Foxl2os 9 98949781 to 98955299 5518 - lncRNA gene forkhead box L2, opposite strand
Cpgi22184 9 98952137 to 98952684 547 CpG island CpG island 22184
Cpgi22185 9 98954491 to 98957465 2974 CpG island CpG island 22185
Tssr91033 9 98954782 to 98954803 21 - TSS region transcription start site region 91033
Tssr86667 9 98955273 to 98955291 18 + TSS region transcription start site region 86667
Tssr91034 9 98955302 to 98955313 11 - TSS region transcription start site region 91034
Tssr91035 9 98955340 to 98955348 8 - TSS region transcription start site region 91035
Tssr86668 9 98955428 to 98955447 19 + TSS region transcription start site region 86668
Tssr86669 9 98955449 to 98955476 27 + TSS region transcription start site region 86669
Tssr86670 9 98955525 to 98955552 27 + TSS region transcription start site region 86670
Foxl2 9 98955607 to 98958126 2519 + protein coding gene forkhead box L2
Tssr91036 9 98957293 to 98957296 3 - TSS region transcription start site region 91036
Cpgi22186 9 98962792 to 98962971 179 CpG island CpG island 22186