Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:98564460-99715781

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167 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Alpq3 9 37394901 to 98819654 61424753 QTL alcohol preference QTL 3
Habiir4 9 69360465 to 98819654 29459189 QTL hyperoxic acute lung injury imprinted region 4
Copb2 9 98563731 to 98588375 24644 + protein coding gene coatomer protein complex, subunit beta 2 (beta prime)
Gm47147 9 98575308 to 98576766 1458 - pseudogene predicted gene, 47147
Mrps22 9 98588730 to 98601660 12930 - protein coding gene mitochondrial ribosomal protein S22
Gm37637 9 98590495 to 98591750 1255 + antisense lncRNA gene predicted gene, 37637
Cpgi22180 9 98601252 to 98601818 566 CpG island CpG island 22180
Tssr91031 9 98601642 to 98601677 35 - TSS region transcription start site region 91031
Gm27919 9 98705730 to 98705836 106 - unclassified non-coding RNA gene predicted gene, 27919
Pisrt1 9 98705752 to 98706266 514 - unclassified gene polled intersex syndrome regulated transcript 1
D9Mit275 9 98732427 to 98732545 118 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 275
E330023G01Rik 9 98748599 to 98820087 71488 - lincRNA gene RIKEN cDNA E330023G01 gene
Gm39411 9 98749745 to 98751290 1545 + lncRNA gene predicted gene, 39411
Gm37282 9 98767653 to 98767816 163 - unclassified gene predicted gene, 37282
Gm37917 9 98767930 to 98768321 391 + unclassified gene predicted gene, 37917
Gm38226 9 98771105 to 98771625 520 + unclassified gene predicted gene, 38226
Gm33563 9 98771622 to 98779175 7553 + lncRNA gene predicted gene, 33563
D9Mit35.1 9 98798185 to 98798303 118 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 35.1
Char1 9 98798268 to 98798392 124 QTL P. chabaudi malaria resistance QTL 1
D9Mit35 9 98798268 to 98798392 124 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 35
Loh1 9 98798268 to 99910428 1112160 heritable phenotypic marker loss of heterozygosity, region 1
D9Dcr29 9 98798283 to 98798386 103 DNA segment DNA segment, Chr 9, Derry C. Roopenian 29
D9Mit35.2 9 98798372 to 98798484 112 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 35.2
Gm33644 9 98805480 to 98807937 2457 - lncRNA gene predicted gene, 33644
D9Mit114 9 98813841 to 98813996 155 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 114
D9Mit355 9 98819535 to 98819654 119 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 355
D9Dcr30 9 98819536 to 98819657 121 DNA segment DNA segment, Chr 9, Derry C. Roopenian 30
Cpgi22181 9 98842271 to 98842789 518 CpG island CpG island 22181
Prr23a1 9 98842503 to 98843385 882 + protein coding gene proline rich 23A, member 1
Cpgi22182 9 98856379 to 98856657 278 CpG island CpG island 22182
Prr23a2 9 98856591 to 98857352 761 + protein coding gene proline rich 23A, member 2
Tssr86665 9 98864743 to 98864803 60 + TSS region transcription start site region 86665
Prr23a3 9 98864767 to 98866580 1813 + protein coding gene proline rich 23A, member 3
Cpgi22183 9 98864862 to 98865228 366 CpG island CpG island 22183
Tssr86666 9 98864868 to 98864894 26 + TSS region transcription start site region 86666
Gm5920 9 98873064 to 98873916 852 - pseudogene predicted gene 5920
Tssr91032 9 98873926 to 98873930 4 - TSS region transcription start site region 91032
Gm33700 9 98888211 to 98888907 696 + protein coding gene predicted gene, 33700
7420426K07Rik 9 98903119 to 98904622 1503 + protein coding gene RIKEN cDNA 7420426K07 gene
Gm33778 9 98918978 to 98919681 703 + protein coding gene predicted gene, 33778
Gm28266 9 98925174 to 98925612 438 - pseudogene predicted gene 28266
Foxl2os 9 98949781 to 98955299 5518 - lncRNA gene forkhead box L2, opposite strand
Cpgi22184 9 98952137 to 98952684 547 CpG island CpG island 22184
Cpgi22185 9 98954491 to 98957465 2974 CpG island CpG island 22185
Tssr91033 9 98954782 to 98954803 21 - TSS region transcription start site region 91033
Tssr86667 9 98955273 to 98955291 18 + TSS region transcription start site region 86667
Tssr91034 9 98955302 to 98955313 11 - TSS region transcription start site region 91034
Tssr91035 9 98955340 to 98955348 8 - TSS region transcription start site region 91035
Tssr86668 9 98955428 to 98955447 19 + TSS region transcription start site region 86668
Tssr86669 9 98955449 to 98955476 27 + TSS region transcription start site region 86669
Tssr86670 9 98955525 to 98955552 27 + TSS region transcription start site region 86670
Foxl2 9 98955607 to 98958126 2519 + protein coding gene forkhead box L2
Tssr91036 9 98957293 to 98957296 3 - TSS region transcription start site region 91036
Cpgi22186 9 98962792 to 98962971 179 CpG island CpG island 22186
Cpgi22187 9 98963703 to 98963872 169 CpG island CpG island 22187
Cpgi22188 9 98965110 to 98965378 268 CpG island CpG island 22188
Cpgi22189 9 98972940 to 98973557 617 CpG island CpG island 22189
Cpgi22190 9 98986002 to 98987003 1001 CpG island CpG island 22190
Tssr86671 9 98986365 to 98986412 47 + TSS region transcription start site region 86671
Faim 9 98986373 to 99002019 15646 + protein coding gene Fas apoptotic inhibitory molecule
Tssr86672 9 98986420 to 98986431 11 + TSS region transcription start site region 86672
Tssr86673 9 98986432 to 98986468 36 + TSS region transcription start site region 86673
D9Mit356 9 98989258 to 98989373 115 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 356
Tssr86674 9 98991778 to 98991821 43 + TSS region transcription start site region 86674
Gm1123 9 99006965 to 99035690 28725 - protein coding gene predicted gene 1123
Tssr91037 9 99017844 to 99017862 18 - TSS region transcription start site region 91037
D9Mit199 9 99020903 to 99021041 138 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 199
D9Dcr31 9 99022716 to 99022810 94 DNA segment DNA segment, Chr 9, Derry C. Roopenian 31
Tssr2986 9 99035633 to 99035642 9 - TSS region transcription start site region 2986
Tssr91038 9 99035647 to 99035676 29 - TSS region transcription start site region 91038
Tssr91039 9 99035679 to 99035718 39 - TSS region transcription start site region 91039
Tssr91040 9 99035733 to 99035751 18 - TSS region transcription start site region 91040
Tssr2987 9 99035756 to 99035769 13 - TSS region transcription start site region 2987
Pik3cb 9 99038402 to 99140211 101809 - protein coding gene phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta
Gm2773 9 99116493 to 99140622 24129 + pseudogene predicted gene 2773
Tssr91041 9 99136103 to 99136106 3 - TSS region transcription start site region 91041
Cpgi22191 9 99139460 to 99140781 1321 CpG island CpG island 22191
Tssr86675 9 99139513 to 99139530 17 + TSS region transcription start site region 86675
Tssr91042 9 99140065 to 99140080 15 - TSS region transcription start site region 91042
Tssr91043 9 99140110 to 99140124 14 - TSS region transcription start site region 91043
Tssr91044 9 99140147 to 99140226 79 - TSS region transcription start site region 91044
D9Dcr32 9 99154763 to 99154858 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 32
Gm18790 9 99158138 to 99158684 546 - pseudogene predicted gene, 18790
Tssr91045 9 99158451 to 99158454 3 - TSS region transcription start site region 91045
D9Dcr33 9 99160163 to 99160262 99 DNA segment DNA segment, Chr 9, Derry C. Roopenian 33
Gm33857 9 99161047 to 99176021 14974 + lncRNA gene predicted gene, 33857
D9Mit136 9 99169485 to 99169634 149 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 136
D9Dcr34 9 99169538 to 99169625 87 DNA segment DNA segment, Chr 9, Derry C. Roopenian 34
Tssr86676 9 99183553 to 99183598 45 + TSS region transcription start site region 86676
Tssr86677 9 99183618 to 99183643 25 + TSS region transcription start site region 86677
Gm2950 9 99220048 to 99220567 519 - pseudogene predicted gene 2950
Faiml 9 99229376 to 99237239 7863 - protein coding gene Fas apoptotic inhibitory molecule like
Tssr91046 9 99237222 to 99237245 23 - TSS region transcription start site region 91046
Gm38327 9 99241851 to 99243605 1754 - unclassified gene predicted gene, 38327
Cpgi22192 9 99243047 to 99243906 859 CpG island CpG island 22192
Cep70 9 99243367 to 99300404 57037 + protein coding gene centrosomal protein 70
Tssr86678 9 99243421 to 99243474 53 + TSS region transcription start site region 86678
Tssr86679 9 99243683 to 99243741 58 + TSS region transcription start site region 86679
Tssr86680 9 99247069 to 99247075 6 + TSS region transcription start site region 86680
Gm47199 9 99259475 to 99260207 732 - pseudogene predicted gene, 47199
Gm18914 9 99260945 to 99261560 615 - pseudogene predicted gene, 18914
4930422M22Rik 9 99304521 to 99306279 1758 - antisense lncRNA gene RIKEN cDNA 4930422M22 gene
Tssr91047 9 99304706 to 99304715 9 - TSS region transcription start site region 91047
Tssr91048 9 99304723 to 99304741 18 - TSS region transcription start site region 91048
Tssr91049 9 99304752 to 99304758 6 - TSS region transcription start site region 91049
Tssr86681 9 99304840 to 99304882 42 + TSS region transcription start site region 86681
Gm37249 9 99307583 to 99310451 2868 + unclassified non-coding RNA gene predicted gene, 37249
Esyt3 9 99309963 to 99358557 48594 - protein coding gene extended synaptotagmin-like protein 3
Gm46127 9 99319654 to 99322615 2961 + lncRNA gene predicted gene, 46127
Tssr91050 9 99322667 to 99322679 12 - TSS region transcription start site region 91050
1700008A23Rik 9 99322826 to 99323516 690 + unclassified gene RIKEN cDNA 1700008A23 gene
Cpgi22193 9 99357627 to 99358705 1078 CpG island CpG island 22193
Tssr91051 9 99358518 to 99358552 34 - TSS region transcription start site region 91051
Gm28087 9 99367033 to 99368490 1457 + lincRNA gene predicted gene 28087
Cpgi22194 9 99369019 to 99369216 197 CpG island CpG island 22194
Mras 9 99385420 to 99436964 51544 - protein coding gene muscle and microspikes RAS
Tssr91052 9 99396525 to 99396536 11 - TSS region transcription start site region 91052
Tssr91053 9 99408215 to 99408220 5 - TSS region transcription start site region 91053
Tssr91054 9 99411194 to 99411240 46 - TSS region transcription start site region 91054
Tssr91055 9 99411824 to 99411870 46 - TSS region transcription start site region 91055
Tssr91056 9 99420247 to 99420257 10 - TSS region transcription start site region 91056
Tssr91057 9 99420265 to 99420276 11 - TSS region transcription start site region 91057
Tssr91058 9 99420322 to 99420334 12 - TSS region transcription start site region 91058
Tssr91059 9 99420370 to 99420394 24 - TSS region transcription start site region 91059
Tssr91060 9 99423094 to 99423137 43 - TSS region transcription start site region 91060
Tssr91061 9 99426132 to 99426134 2 - TSS region transcription start site region 91061
Cpgi22195 9 99435967 to 99437193 1226 CpG island CpG island 22195
Tssr91062 9 99436470 to 99436533 63 - TSS region transcription start site region 91062
Tssr91063 9 99436548 to 99436562 14 - TSS region transcription start site region 91063
Tssr91064 9 99436583 to 99436609 26 - TSS region transcription start site region 91064
Tssr91065 9 99436613 to 99436622 9 - TSS region transcription start site region 91065
Tssr91066 9 99436629 to 99436641 12 - TSS region transcription start site region 91066
Tssr91067 9 99436647 to 99436681 34 - TSS region transcription start site region 91067
Tssr91068 9 99436687 to 99436733 46 - TSS region transcription start site region 91068
Tssr91069 9 99436749 to 99436760 11 - TSS region transcription start site region 91069
Gm39412 9 99437014 to 99437708 694 + lncRNA gene predicted gene, 39412
Tssr91070 9 99437555 to 99437564 9 - TSS region transcription start site region 91070
Tssr86682 9 99451422 to 99451436 14 + TSS region transcription start site region 86682
Tssr86683 9 99451437 to 99451453 16 + TSS region transcription start site region 86683
Nme9 9 99451475 to 99474751 23276 + protein coding gene NME/NM23 family member 9
1600029I14Rik 9 99470421 to 99474751 4330 + lncRNA gene RIKEN cDNA 1600029I14 gene
Armc8 9 99478372 to 99568899 90527 - protein coding gene armadillo repeat containing 8
Tssr91071 9 99499482 to 99499514 32 - TSS region transcription start site region 91071
Cpgi22196 9 99568113 to 99569086 973 CpG island CpG island 22196
Tssr91072 9 99568640 to 99568678 38 - TSS region transcription start site region 91072
Tssr91073 9 99568849 to 99568911 62 - TSS region transcription start site region 91073
Cpgi22197 9 99575614 to 99576310 696 CpG island CpG island 22197
Dbr1 9 99575775 to 99584461 8686 + protein coding gene debranching RNA lariats 1
Tssr86684 9 99575776 to 99575829 53 + TSS region transcription start site region 86684
Tssr86685 9 99612468 to 99612529 61 + TSS region transcription start site region 86685
A4gnt 9 99612502 to 99622367 9865 + protein coding gene alpha-1,4-N-acetylglucosaminyltransferase
Tssr86686 9 99612545 to 99612557 12 + TSS region transcription start site region 86686
Dzip1l 9 99629496 to 99669256 39760 + protein coding gene DAZ interacting protein 1-like
Tssr86687 9 99629531 to 99629592 61 + TSS region transcription start site region 86687
Cpgi22198 9 99629549 to 99630121 572 CpG island CpG island 22198
Tssr86688 9 99629823 to 99629853 30 + TSS region transcription start site region 86688
Tssr86689 9 99629855 to 99629876 21 + TSS region transcription start site region 86689
Tssr86690 9 99632643 to 99632658 15 + TSS region transcription start site region 86690
Cldn18 9 99690796 to 99717267 26471 - protein coding gene claudin 18
Tssr91074 9 99691684 to 99691687 3 - TSS region transcription start site region 91074
Tssr91075 9 99692179 to 99692204 25 - TSS region transcription start site region 91075
Tssr91076 9 99692487 to 99692503 16 - TSS region transcription start site region 91076
Tssr91077 9 99692570 to 99692582 12 - TSS region transcription start site region 91077
Gm16004 9 99708399 to 99756043 47644 + antisense lncRNA gene predicted gene 16004
Tssr91078 9 99709952 to 99709988 36 - TSS region transcription start site region 91078
Tssr91079 9 99710005 to 99710022 17 - TSS region transcription start site region 91079
Tssr91080 9 99710069 to 99710085 16 - TSS region transcription start site region 91080