Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:98008426-98838594

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Alpq3 9 37394901 to 98819654 61424753 QTL alcohol preference QTL 3
Habiir4 9 69360465 to 98819654 29459189 QTL hyperoxic acute lung injury imprinted region 4
Clstn2 9 97444395 to 98033181 588786 - protein coding gene calsyntenin 2
4921534H16Rik 9 98003420 to 98012175 8755 + antisense lncRNA gene RIKEN cDNA 4921534H16 gene
Cpgi22176 9 98032036 to 98033793 1757 CpG island CpG island 22176
Tssr86636 9 98032884 to 98032901 17 + TSS region transcription start site region 86636
Tssr91026 9 98033111 to 98033122 11 - TSS region transcription start site region 91026
Tssr2983 9 98033174 to 98033181 7 - TSS region transcription start site region 2983
Tssr91027 9 98033190 to 98033207 17 - TSS region transcription start site region 91027
Tssr91028 9 98033215 to 98033225 10 - TSS region transcription start site region 91028
Tssr91029 9 98033247 to 98033258 11 - TSS region transcription start site region 91029
2610303G11Rik 9 98186527 to 98187153 626 - lincRNA gene RIKEN cDNA 2610303G11 gene
Tssr86637 9 98287429 to 98287440 11 + TSS region transcription start site region 86637
Nmnat3 9 98287435 to 98420438 133003 + protein coding gene nicotinamide nucleotide adenylyltransferase 3
Tssr86638 9 98287449 to 98287460 11 + TSS region transcription start site region 86638
Tssr86639 9 98287470 to 98287484 14 + TSS region transcription start site region 86639
Cpgi22177 9 98296478 to 98297150 672 CpG island CpG island 22177
Tssr86640 9 98296556 to 98296581 25 + TSS region transcription start site region 86640
Tssr86641 9 98296590 to 98296647 57 + TSS region transcription start site region 86641
Tssr86642 9 98296854 to 98296874 20 + TSS region transcription start site region 86642
Tssr86643 9 98296903 to 98296912 9 + TSS region transcription start site region 86643
Gm46126 9 98297197 to 98298591 1394 - lncRNA gene predicted gene, 46126
Gm28530 9 98301650 to 98302226 576 + pseudogene predicted gene 28530
Tssr86644 9 98331251 to 98331252 1 + TSS region transcription start site region 86644
Tssr86645 9 98369752 to 98369760 8 + TSS region transcription start site region 86645
Rbp1 9 98422961 to 98446551 23590 + protein coding gene retinol binding protein 1, cellular
D9Mit33 9 98423426 to 98423594 168 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 33
Cpgi22178 9 98424664 to 98425693 1029 CpG island CpG island 22178
Tssr86646 9 98424779 to 98424832 53 + TSS region transcription start site region 86646
Tssr86647 9 98424862 to 98424905 43 + TSS region transcription start site region 86647
Tssr86648 9 98424922 to 98424935 13 + TSS region transcription start site region 86648
Tssr86649 9 98424959 to 98424970 11 + TSS region transcription start site region 86649
Tssr2984 9 98425083 to 98425104 21 + TSS region transcription start site region 2984
Tssr86650 9 98425306 to 98425330 24 + TSS region transcription start site region 86650
Tssr86651 9 98425488 to 98425513 25 + TSS region transcription start site region 86651
Tssr86652 9 98486067 to 98486106 39 + TSS region transcription start site region 86652
Tssr86653 9 98486110 to 98486125 15 + TSS region transcription start site region 86653
D9Dcr28 9 98487056 to 98487154 98 DNA segment DNA segment, Chr 9, Derry C. Roopenian 28
D9Mit211.1 9 98489768 to 98489956 188 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 211.1
D9Mit211.3 9 98490164 to 98490306 142 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 211.3
Tssr86654 9 98490353 to 98490372 19 + TSS region transcription start site region 86654
Tssr86655 9 98490522 to 98490536 14 + TSS region transcription start site region 86655
Rbp2 9 98490537 to 98509771 19234 + protein coding gene retinol binding protein 2, cellular
Tssr86656 9 98490545 to 98490562 17 + TSS region transcription start site region 86656
Gm37113 9 98493968 to 98495124 1156 + unclassified gene predicted gene, 37113
Tssr86657 9 98498707 to 98498735 28 + TSS region transcription start site region 86657
Tssr86658 9 98504754 to 98504766 12 + TSS region transcription start site region 86658
Tssr2985 9 98504945 to 98504956 11 + TSS region transcription start site region 2985
Tssr86659 9 98509663 to 98509683 20 + TSS region transcription start site region 86659
Tssr86660 9 98509727 to 98509738 11 + TSS region transcription start site region 86660
Tssr86661 9 98515519 to 98515526 7 + TSS region transcription start site region 86661
4930579K19Rik 9 98562460 to 98563611 1151 - lncRNA gene RIKEN cDNA 4930579K19 gene
Cpgi22179 9 98563177 to 98564170 993 CpG island CpG island 22179
Tssr91030 9 98563580 to 98563620 40 - TSS region transcription start site region 91030
Tssr86662 9 98563696 to 98563698 2 + TSS region transcription start site region 86662
Tssr86663 9 98563704 to 98563737 33 + TSS region transcription start site region 86663
Copb2 9 98563731 to 98588375 24644 + protein coding gene coatomer protein complex, subunit beta 2 (beta prime)
Tssr86664 9 98563742 to 98563775 33 + TSS region transcription start site region 86664
Gm47147 9 98575308 to 98576766 1458 - pseudogene predicted gene, 47147
Mrps22 9 98588730 to 98601660 12930 - protein coding gene mitochondrial ribosomal protein S22
Gm37637 9 98590495 to 98591750 1255 + antisense lncRNA gene predicted gene, 37637
Cpgi22180 9 98601252 to 98601818 566 CpG island CpG island 22180
Tssr91031 9 98601642 to 98601677 35 - TSS region transcription start site region 91031
Gm27919 9 98705730 to 98705836 106 - unclassified non-coding RNA gene predicted gene, 27919
Pisrt1 9 98705752 to 98706266 514 - unclassified gene polled intersex syndrome regulated transcript 1
D9Mit275 9 98732427 to 98732545 118 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 275
E330023G01Rik 9 98748599 to 98820087 71488 - lincRNA gene RIKEN cDNA E330023G01 gene
Gm39411 9 98749745 to 98751290 1545 + lncRNA gene predicted gene, 39411
Gm37282 9 98767653 to 98767816 163 - unclassified gene predicted gene, 37282
Gm37917 9 98767930 to 98768321 391 + unclassified gene predicted gene, 37917
Gm38226 9 98771105 to 98771625 520 + unclassified gene predicted gene, 38226
Gm33563 9 98771622 to 98779175 7553 + lncRNA gene predicted gene, 33563
D9Mit35.1 9 98798185 to 98798303 118 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 35.1
Char1 9 98798268 to 98798392 124 QTL P. chabaudi malaria resistance QTL 1
D9Mit35 9 98798268 to 98798392 124 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 35
Loh1 9 98798268 to 99910428 1112160 heritable phenotypic marker loss of heterozygosity, region 1
D9Dcr29 9 98798283 to 98798386 103 DNA segment DNA segment, Chr 9, Derry C. Roopenian 29
D9Mit35.2 9 98798372 to 98798484 112 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 35.2
Gm33644 9 98805480 to 98807937 2457 - lncRNA gene predicted gene, 33644
D9Mit114 9 98813841 to 98813996 155 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 114
D9Mit355 9 98819535 to 98819654 119 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 355
D9Dcr30 9 98819536 to 98819657 121 DNA segment DNA segment, Chr 9, Derry C. Roopenian 30