Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:97093971-98435158

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc25a36 9 97075281 to 97111041 35760 - protein coding gene solute carrier family 25, member 36
Tssr86627 9 97103913 to 97103925 12 + TSS region transcription start site region 86627
Tssr86628 9 97103944 to 97103953 9 + TSS region transcription start site region 86628
Cpgi22174 9 97110491 to 97111548 1057 CpG island CpG island 22174
Tssr86629 9 97110609 to 97110652 43 + TSS region transcription start site region 86629
Tssr91020 9 97111027 to 97111067 40 - TSS region transcription start site region 91020
Tssr91021 9 97111117 to 97111159 42 - TSS region transcription start site region 91021
Tssr91022 9 97111162 to 97111175 13 - TSS region transcription start site region 91022
Tssr86630 9 97111302 to 97111319 17 + TSS region transcription start site region 86630
Tssr86631 9 97141113 to 97141139 26 + TSS region transcription start site region 86631
Tssr86632 9 97179153 to 97179163 10 + TSS region transcription start site region 86632
Rpl7a-ps10 9 97179179 to 97179976 797 + pseudogene ribosomal protein L7A, pseudogene 10
Gm5371 9 97209044 to 97210880 1836 - pseudogene predicted gene 5371
Gm29241 9 97227800 to 97228895 1095 - pseudogene predicted gene 29241
Gm29240 9 97233815 to 97234100 285 - pseudogene predicted gene 29240
Tssr2982 9 97234167 to 97234173 6 - TSS region transcription start site region 2982
Gm33302 9 97275534 to 97281893 6359 + lncRNA gene predicted gene, 33302
Tssr86633 9 97275727 to 97275754 27 + TSS region transcription start site region 86633
A030012G06Rik 9 97289186 to 97291065 1879 + unclassified gene RIKEN cDNA A030012G06 gene
Gm33357 9 97292048 to 97294369 2321 + lncRNA gene predicted gene, 33357
Gm46149 9 97310633 to 97319215 8582 + lncRNA gene predicted gene, 46149
Trim42 9 97349562 to 97369958 20396 - protein coding gene tripartite motif-containing 42
Gm15891 9 97349616 to 97369945 20329 + antisense lncRNA gene predicted gene 15891
Cpgi22175 9 97365582 to 97366285 703 CpG island CpG island 22175
Tssr91023 9 97370000 to 97370021 21 - TSS region transcription start site region 91023
Gm25607 9 97439501 to 97439627 126 - snoRNA gene predicted gene, 25607
Clstn2 9 97444395 to 98033181 588786 - protein coding gene calsyntenin 2
D9Ertd356e 9 97479360 to 97479559 199 DNA segment DNA segment, Chr 9, ERATO Doi 356, expressed
Tssr91024 9 97743590 to 97743593 3 - TSS region transcription start site region 91024
9430018C23Rik 9 97763971 to 97765158 1187 unclassified gene RIKEN cDNA 9430018C23 gene
Gm37661 9 97928606 to 97930155 1549 - unclassified gene predicted gene, 37661
4921534H16Rik 9 98003420 to 98012175 8755 + antisense lncRNA gene RIKEN cDNA 4921534H16 gene
Tssr86634 9 98003421 to 98003450 29 + TSS region transcription start site region 86634
Tssr86635 9 98003453 to 98003456 3 + TSS region transcription start site region 86635
Tssr91025 9 98007763 to 98007765 2 - TSS region transcription start site region 91025
Cpgi22176 9 98032036 to 98033793 1757 CpG island CpG island 22176
Tssr86636 9 98032884 to 98032901 17 + TSS region transcription start site region 86636
Tssr91026 9 98033111 to 98033122 11 - TSS region transcription start site region 91026
Tssr2983 9 98033174 to 98033181 7 - TSS region transcription start site region 2983
Tssr91027 9 98033190 to 98033207 17 - TSS region transcription start site region 91027
Tssr91028 9 98033215 to 98033225 10 - TSS region transcription start site region 91028
Tssr91029 9 98033247 to 98033258 11 - TSS region transcription start site region 91029
2610303G11Rik 9 98186527 to 98187153 626 - lincRNA gene RIKEN cDNA 2610303G11 gene
Tssr86637 9 98287429 to 98287440 11 + TSS region transcription start site region 86637
Nmnat3 9 98287435 to 98420438 133003 + protein coding gene nicotinamide nucleotide adenylyltransferase 3
Tssr86638 9 98287449 to 98287460 11 + TSS region transcription start site region 86638
Tssr86639 9 98287470 to 98287484 14 + TSS region transcription start site region 86639
Cpgi22177 9 98296478 to 98297150 672 CpG island CpG island 22177
Tssr86640 9 98296556 to 98296581 25 + TSS region transcription start site region 86640
Tssr86641 9 98296590 to 98296647 57 + TSS region transcription start site region 86641
Tssr86642 9 98296854 to 98296874 20 + TSS region transcription start site region 86642
Tssr86643 9 98296903 to 98296912 9 + TSS region transcription start site region 86643
Gm46126 9 98297197 to 98298591 1394 - lncRNA gene predicted gene, 46126
Gm28530 9 98301650 to 98302226 576 + pseudogene predicted gene 28530
Tssr86644 9 98331251 to 98331252 1 + TSS region transcription start site region 86644
Tssr86645 9 98369752 to 98369760 8 + TSS region transcription start site region 86645
Rbp1 9 98422961 to 98446551 23590 + protein coding gene retinol binding protein 1, cellular
D9Mit33 9 98423426 to 98423594 168 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 33
Cpgi22178 9 98424664 to 98425693 1029 CpG island CpG island 22178
Tssr86646 9 98424779 to 98424832 53 + TSS region transcription start site region 86646
Tssr86647 9 98424862 to 98424905 43 + TSS region transcription start site region 86647
Tssr86648 9 98424922 to 98424935 13 + TSS region transcription start site region 86648
Tssr86649 9 98424959 to 98424970 11 + TSS region transcription start site region 86649
Tssr2984 9 98425083 to 98425104 21 + TSS region transcription start site region 2984
Tssr86650 9 98425306 to 98425330 24 + TSS region transcription start site region 86650
Tssr86651 9 98425488 to 98425513 25 + TSS region transcription start site region 86651