Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:96357048-98229369

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183 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atp1b3 9 96332662 to 96364299 31637 - protein coding gene ATPase, Na+/K+ transporting, beta 3 polypeptide
Tssr90955 9 96358507 to 96358536 29 - TSS region transcription start site region 90955
Cpgi22162 9 96363503 to 96364889 1386 CpG island CpG island 22162
Tssr86601 9 96363924 to 96363938 14 + TSS region transcription start site region 86601
Tssr90956 9 96364299 to 96364322 23 - TSS region transcription start site region 90956
Tssr90957 9 96364407 to 96364425 18 - TSS region transcription start site region 90957
Tssr90958 9 96364431 to 96364451 20 - TSS region transcription start site region 90958
Gm39409 9 96378116 to 96396813 18697 - lncRNA gene predicted gene, 39409
Gm40550 9 96385390 to 96399984 14594 + lncRNA gene predicted gene, 40550
Tssr90959 9 96391971 to 96391981 10 - TSS region transcription start site region 90959
Tssr86602 9 96392231 to 96392247 16 + TSS region transcription start site region 86602
Tssr86603 9 96392314 to 96392316 2 + TSS region transcription start site region 86603
Tssr90960 9 96394942 to 96394951 9 - TSS region transcription start site region 90960
Tssr90961 9 96394955 to 96394971 16 - TSS region transcription start site region 90961
Tssr90962 9 96394976 to 96394995 19 - TSS region transcription start site region 90962
D9Dcr27 9 96397773 to 96397886 113 DNA segment DNA segment, Chr 9, Derry C. Roopenian 27
Bglu14 9 96397810 to 96397888 78 QTL blood glucose level 14
D9Mit274 9 96397810 to 96397888 78 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 274
BC043934 9 96435783 to 96438138 2355 - lincRNA gene cDNA sequence BC043934
Cpgi22163 9 96437028 to 96437226 198 CpG island CpG island 22163
Cpgi22164 9 96437503 to 96438219 716 CpG island CpG island 22164
Tssr90963 9 96438161 to 96438226 65 - TSS region transcription start site region 90963
Rnf7 9 96470937 to 96478675 7738 - protein coding gene ring finger protein 7
Cpgi22165 9 96478040 to 96478882 842 CpG island CpG island 22165
Tssr86604 9 96478345 to 96478361 16 + TSS region transcription start site region 86604
Tssr90964 9 96478596 to 96478622 26 - TSS region transcription start site region 90964
Tssr90965 9 96478631 to 96478647 16 - TSS region transcription start site region 90965
Tssr90966 9 96478660 to 96478669 9 - TSS region transcription start site region 90966
Tssr86605 9 96478779 to 96478806 27 + TSS region transcription start site region 86605
Tssr90967 9 96479527 to 96479536 9 - TSS region transcription start site region 90967
Gm28729 9 96486001 to 96525264 39263 - protein coding gene predicted gene 28729
Gm27289 9 96495132 to 96495213 81 - rRNA gene predicted gene, 27289
Tssr90968 9 96525245 to 96525257 12 - TSS region transcription start site region 90968
Tssr90969 9 96525259 to 96525284 25 - TSS region transcription start site region 90969
Tssr86606 9 96525303 to 96525324 21 + TSS region transcription start site region 86606
Tssr86607 9 96525327 to 96525362 35 + TSS region transcription start site region 86607
Tssr90970 9 96525406 to 96525415 9 - TSS region transcription start site region 90970
Tssr86608 9 96525564 to 96525573 9 + TSS region transcription start site region 86608
Gm46125 9 96525569 to 96606085 80516 + lncRNA gene predicted gene, 46125
Cpgi22166 9 96536881 to 96537228 347 CpG island CpG island 22166
Gm8495 9 96537187 to 96537856 669 + pseudogene predicted gene 8495
Tssr86609 9 96537269 to 96537296 27 + TSS region transcription start site region 86609
Rasa2 9 96539300 to 96631617 92317 - protein coding gene RAS p21 protein activator 2
Tssr90971 9 96539884 to 96539888 4 - TSS region transcription start site region 90971
n-R5s87 9 96549594 to 96549709 115 - rRNA gene nuclear encoded rRNA 5S 87
Gm19280 9 96584303 to 96584507 204 + pseudogene predicted gene, 19280
Tssr90972 9 96611411 to 96611424 13 - TSS region transcription start site region 90972
Tssr86610 9 96619173 to 96619203 30 + TSS region transcription start site region 86610
Cpgi22167 9 96630443 to 96631983 1540 CpG island CpG island 22167
Tssr90973 9 96630625 to 96630645 20 - TSS region transcription start site region 90973
Tssr90974 9 96630871 to 96630900 29 - TSS region transcription start site region 90974
Tssr86611 9 96630993 to 96631030 37 + TSS region transcription start site region 86611
Tssr90975 9 96631182 to 96631196 14 - TSS region transcription start site region 90975
Tssr90976 9 96631487 to 96631554 67 - TSS region transcription start site region 90976
Tssr2976 9 96636751 to 96636772 21 + TSS region transcription start site region 2976
Tssr90977 9 96637254 to 96637270 16 - TSS region transcription start site region 90977
Tssr86612 9 96637428 to 96637429 1 + TSS region transcription start site region 86612
Tssr2977 9 96650001 to 96650013 12 - TSS region transcription start site region 2977
Cpgi22168 9 96669944 to 96670129 185 CpG island CpG island 22168
Tssr90978 9 96685326 to 96685338 12 - TSS region transcription start site region 90978
Zbtb38 9 96685391 to 96731675 46284 - protein coding gene zinc finger and BTB domain containing 38
Tssr90979 9 96691749 to 96691776 27 - TSS region transcription start site region 90979
Tssr90980 9 96696377 to 96696428 51 - TSS region transcription start site region 90980
Tssr86613 9 96705804 to 96705835 31 + TSS region transcription start site region 86613
A930006L05Rik 9 96705828 to 96711449 5621 + antisense lncRNA gene RIKEN cDNA A930006L05 gene
Tssr90981 9 96713143 to 96713147 4 - TSS region transcription start site region 90981
Tssr90982 9 96713753 to 96713755 2 - TSS region transcription start site region 90982
Cpgi22169 9 96719371 to 96720247 876 CpG island CpG island 22169
Gm6328 9 96719381 to 96720299 918 unclassified gene predicted gene 6328
Tssr90983 9 96719404 to 96719479 75 - TSS region transcription start site region 90983
Tssr86614 9 96719464 to 96719518 54 + TSS region transcription start site region 86614
Tssr90984 9 96719549 to 96719564 15 - TSS region transcription start site region 90984
Tssr90985 9 96719809 to 96719889 80 - TSS region transcription start site region 90985
Tssr90986 9 96719897 to 96719982 85 - TSS region transcription start site region 90986
Tssr90987 9 96720040 to 96720059 19 - TSS region transcription start site region 90987
Tssr90988 9 96725971 to 96725975 4 - TSS region transcription start site region 90988
Tssr90989 9 96731361 to 96731372 11 - TSS region transcription start site region 90989
Tssr90990 9 96731401 to 96731415 14 - TSS region transcription start site region 90990
E030011O05Rik 9 96731575 to 96752831 21256 - lncRNA gene RIKEN cDNA E030011O05 gene
Tssr90991 9 96732174 to 96732201 27 - TSS region transcription start site region 90991
Tssr90992 9 96732217 to 96732230 13 - TSS region transcription start site region 90992
Tssr90993 9 96732271 to 96732284 13 - TSS region transcription start site region 90993
Tssr90994 9 96732300 to 96732326 26 - TSS region transcription start site region 90994
Tssr90995 9 96737605 to 96737611 6 - TSS region transcription start site region 90995
Tssr90996 9 96752653 to 96752735 82 - TSS region transcription start site region 90996
Tssr90997 9 96752822 to 96752869 47 - TSS region transcription start site region 90997
Cpgi22170 9 96759113 to 96759337 224 CpG island CpG island 22170
Tssr86615 9 96759618 to 96759633 15 + TSS region transcription start site region 86615
C430002N11Rik 9 96765562 to 96774397 8835 + lncRNA gene RIKEN cDNA C430002N11 gene
Tssr86616 9 96765572 to 96765580 8 + TSS region transcription start site region 86616
Tssr86617 9 96766811 to 96766836 25 + TSS region transcription start site region 86617
Tssr90998 9 96766859 to 96766898 39 - TSS region transcription start site region 90998
Tssr86618 9 96782456 to 96782496 40 + TSS region transcription start site region 86618
Tssr86619 9 96786315 to 96786326 11 + TSS region transcription start site region 86619
Tssr90999 9 96787742 to 96787753 11 - TSS region transcription start site region 90999
Tssr91000 9 96787756 to 96787763 7 - TSS region transcription start site region 91000
Tssr91001 9 96787843 to 96787850 7 - TSS region transcription start site region 91001
Tssr91002 9 96787865 to 96787880 15 - TSS region transcription start site region 91002
Tssr91003 9 96787881 to 96787912 31 - TSS region transcription start site region 91003
Tssr91004 9 96787914 to 96787955 41 - TSS region transcription start site region 91004
Tssr86620 9 96799786 to 96799796 10 + TSS region transcription start site region 86620
Tssr91005 9 96800515 to 96800537 22 - TSS region transcription start site region 91005
Tssr86621 9 96800625 to 96800635 10 + TSS region transcription start site region 86621
Gm28688 9 96809756 to 96810023 267 + pseudogene predicted gene 28688
Gm8520 9 96813467 to 96814334 867 - pseudogene predicted gene 8520
Pxylp1 9 96823336 to 96892669 69333 - protein coding gene 2-phosphoxylose phosphatase 1
Tssr91006 9 96854567 to 96854570 3 - TSS region transcription start site region 91006
Tssr91007 9 96862974 to 96862985 11 - TSS region transcription start site region 91007
Cpgi22171 9 96888785 to 96890040 1255 CpG island CpG island 22171
Tssr91008 9 96889381 to 96889438 57 - TSS region transcription start site region 91008
Tssr2978 9 96891496 to 96891507 11 - TSS region transcription start site region 2978
Tssr91009 9 96892666 to 96892688 22 - TSS region transcription start site region 91009
Gm10123 9 96895658 to 96896147 489 + pseudogene predicted pseudogene 10123
Tssr86622 9 96897014 to 96897027 13 + TSS region transcription start site region 86622
Tssr2979 9 96899815 to 96899850 35 - TSS region transcription start site region 2979
Tssr86623 9 96905395 to 96905404 9 + TSS region transcription start site region 86623
Gm8524 9 96905507 to 96905885 378 + pseudogene predicted gene 8524
Tssr2980 9 96911150 to 96911155 5 + TSS region transcription start site region 2980
Spsb4 9 96943482 to 97018355 74873 - protein coding gene splA/ryanodine receptor domain and SOCS box containing 4
Tssr91010 9 96966575 to 96966585 10 - TSS region transcription start site region 91010
Tssr91011 9 96966587 to 96966613 26 - TSS region transcription start site region 91011
Tssr91012 9 96984188 to 96984199 11 - TSS region transcription start site region 91012
Tssr91013 9 96984236 to 96984246 10 - TSS region transcription start site region 91013
Cpgi22172 9 96995496 to 96996242 746 CpG island CpG island 22172
Gm16010 9 97013839 to 97018239 4400 + antisense lncRNA gene predicted gene 16010
Tssr86624 9 97015940 to 97015952 12 + TSS region transcription start site region 86624
Tssr86625 9 97015953 to 97015983 30 + TSS region transcription start site region 86625
Tssr2981 9 97015995 to 97015999 4 + TSS region transcription start site region 2981
Tssr86626 9 97016167 to 97016194 27 + TSS region transcription start site region 86626
Cpgi22173 9 97017245 to 97019575 2330 CpG island CpG island 22173
Tssr91014 9 97018744 to 97018761 17 - TSS region transcription start site region 91014
Tssr91015 9 97018823 to 97018835 12 - TSS region transcription start site region 91015
Tssr91016 9 97018851 to 97018879 28 - TSS region transcription start site region 91016
Tssr91017 9 97019044 to 97019068 24 - TSS region transcription start site region 91017
Gm18291 9 97042562 to 97042862 300 - pseudogene predicted gene, 18291
Gm19325 9 97048132 to 97055221 7089 - lincRNA gene predicted gene, 19325
Gm26767 9 97068183 to 97073429 5246 + lincRNA gene predicted gene, 26767
Slc25a36 9 97075281 to 97111041 35760 - protein coding gene solute carrier family 25, member 36
Tssr91018 9 97076894 to 97076897 3 - TSS region transcription start site region 91018
Gm16185 9 97085326 to 97088610 3284 + antisense lncRNA gene predicted gene 16185
Tssr91019 9 97090825 to 97090828 3 - TSS region transcription start site region 91019
Tssr86627 9 97103913 to 97103925 12 + TSS region transcription start site region 86627
Tssr86628 9 97103944 to 97103953 9 + TSS region transcription start site region 86628
Cpgi22174 9 97110491 to 97111548 1057 CpG island CpG island 22174
Tssr86629 9 97110609 to 97110652 43 + TSS region transcription start site region 86629
Tssr91020 9 97111027 to 97111067 40 - TSS region transcription start site region 91020
Tssr91021 9 97111117 to 97111159 42 - TSS region transcription start site region 91021
Tssr91022 9 97111162 to 97111175 13 - TSS region transcription start site region 91022
Tssr86630 9 97111302 to 97111319 17 + TSS region transcription start site region 86630
Tssr86631 9 97141113 to 97141139 26 + TSS region transcription start site region 86631
Tssr86632 9 97179153 to 97179163 10 + TSS region transcription start site region 86632
Rpl7a-ps10 9 97179179 to 97179976 797 + pseudogene ribosomal protein L7A, pseudogene 10
Gm5371 9 97209044 to 97210880 1836 - pseudogene predicted gene 5371
Gm29241 9 97227800 to 97228895 1095 - pseudogene predicted gene 29241
Gm29240 9 97233815 to 97234100 285 - pseudogene predicted gene 29240
Tssr2982 9 97234167 to 97234173 6 - TSS region transcription start site region 2982
Gm33302 9 97275534 to 97281893 6359 + lncRNA gene predicted gene, 33302
Tssr86633 9 97275727 to 97275754 27 + TSS region transcription start site region 86633
A030012G06Rik 9 97289186 to 97291065 1879 + unclassified gene RIKEN cDNA A030012G06 gene
Gm33357 9 97292048 to 97294369 2321 + lncRNA gene predicted gene, 33357
Gm46149 9 97310633 to 97319215 8582 + lncRNA gene predicted gene, 46149
Trim42 9 97349562 to 97369958 20396 - protein coding gene tripartite motif-containing 42
Gm15891 9 97349616 to 97369945 20329 + antisense lncRNA gene predicted gene 15891
Cpgi22175 9 97365582 to 97366285 703 CpG island CpG island 22175
Tssr91023 9 97370000 to 97370021 21 - TSS region transcription start site region 91023
Gm25607 9 97439501 to 97439627 126 - snoRNA gene predicted gene, 25607
Clstn2 9 97444395 to 98033181 588786 - protein coding gene calsyntenin 2
D9Ertd356e 9 97479360 to 97479559 199 DNA segment DNA segment, Chr 9, ERATO Doi 356, expressed
Tssr91024 9 97743590 to 97743593 3 - TSS region transcription start site region 91024
9430018C23Rik 9 97763971 to 97765158 1187 unclassified gene RIKEN cDNA 9430018C23 gene
Gm37661 9 97928606 to 97930155 1549 - unclassified gene predicted gene, 37661
4921534H16Rik 9 98003420 to 98012175 8755 + antisense lncRNA gene RIKEN cDNA 4921534H16 gene
Tssr86634 9 98003421 to 98003450 29 + TSS region transcription start site region 86634
Tssr86635 9 98003453 to 98003456 3 + TSS region transcription start site region 86635
Tssr91025 9 98007763 to 98007765 2 - TSS region transcription start site region 91025
Cpgi22176 9 98032036 to 98033793 1757 CpG island CpG island 22176
Tssr86636 9 98032884 to 98032901 17 + TSS region transcription start site region 86636
Tssr91026 9 98033111 to 98033122 11 - TSS region transcription start site region 91026
Tssr2983 9 98033174 to 98033181 7 - TSS region transcription start site region 2983
Tssr91027 9 98033190 to 98033207 17 - TSS region transcription start site region 91027
Tssr91028 9 98033215 to 98033225 10 - TSS region transcription start site region 91028
Tssr91029 9 98033247 to 98033258 11 - TSS region transcription start site region 91029
2610303G11Rik 9 98186527 to 98187153 626 - lincRNA gene RIKEN cDNA 2610303G11 gene