Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:95813122-96297798

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56 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pls1 9 95752642 to 95845306 92664 - protein coding gene plastin 1 (I-isoform)
Tssr90935 9 95815296 to 95815307 11 - TSS region transcription start site region 90935
Tssr90936 9 95815343 to 95815374 31 - TSS region transcription start site region 90936
Tssr90937 9 95815389 to 95815398 9 - TSS region transcription start site region 90937
Tssr86576 9 95815522 to 95815528 6 + TSS region transcription start site region 86576
Tssr90938 9 95819410 to 95819413 3 - TSS region transcription start site region 90938
Cpgi22157 9 95844888 to 95845536 648 CpG island CpG island 22157
Tssr90939 9 95845215 to 95845285 70 - TSS region transcription start site region 90939
1700065D16Rik 9 95855418 to 95857882 2464 - antisense lncRNA gene RIKEN cDNA 1700065D16 gene
Cpgi22158 9 95857380 to 95858504 1124 CpG island CpG island 22158
Tssr90940 9 95857559 to 95857570 11 - TSS region transcription start site region 90940
Atr 9 95857597 to 95951781 94184 + protein coding gene ataxia telangiectasia and Rad3 related
Tssr86577 9 95857628 to 95857686 58 + TSS region transcription start site region 86577
Tssr86578 9 95857694 to 95857710 16 + TSS region transcription start site region 86578
Tssr90941 9 95857864 to 95857876 12 - TSS region transcription start site region 90941
Tssr90942 9 95857881 to 95857895 14 - TSS region transcription start site region 90942
Tssr86579 9 95857944 to 95857951 7 + TSS region transcription start site region 86579
Gm24004 9 95934613 to 95934790 177 + snRNA gene predicted gene, 24004
Gm16794 9 95942045 to 95954706 12661 - antisense lncRNA gene predicted gene, 16794
Cpgi22159 9 95954570 to 95955432 862 CpG island CpG island 22159
Tssr90943 9 95954658 to 95954698 40 - TSS region transcription start site region 90943
Tssr86580 9 95954744 to 95954783 39 + TSS region transcription start site region 86580
Xrn1 9 95954760 to 96057803 103043 + protein coding gene 5'-3' exoribonuclease 1
Tssr86581 9 95954786 to 95954800 14 + TSS region transcription start site region 86581
Tssr86582 9 95954820 to 95954843 23 + TSS region transcription start site region 86582
Tssr86583 9 95955630 to 95955634 4 + TSS region transcription start site region 86583
Tssr90944 9 95959361 to 95959390 29 - TSS region transcription start site region 90944
Tssr86584 9 95991000 to 95991011 11 + TSS region transcription start site region 86584
C78334 9 96017934 to 96024740 6806 - antisense lncRNA gene expressed sequence C78334
Gm28085 9 96027101 to 96040673 13572 - antisense lncRNA gene predicted gene 28085
Gm38375 9 96028624 to 96030850 2226 + unclassified gene predicted gene, 38375
Tssr86585 9 96043605 to 96043608 3 + TSS region transcription start site region 86585
BC028454 9 96053122 to 96057798 4676 unclassified gene cDNA sequence BC028454
Cpgi22160 9 96119085 to 96119862 777 CpG island CpG island 22160
Tssr90945 9 96119191 to 96119225 34 - TSS region transcription start site region 90945
Gk5 9 96119362 to 96184608 65246 + protein coding gene glycerol kinase 5 (putative)
Tssr86586 9 96119422 to 96119437 15 + TSS region transcription start site region 86586
Cpgi22161 9 96195783 to 96197090 1307 CpG island CpG island 22161
Tssr86587 9 96196246 to 96196280 34 + TSS region transcription start site region 86587
Tfdp2 9 96196275 to 96323646 127371 + protein coding gene transcription factor Dp 2
Tssr86588 9 96196288 to 96196353 65 + TSS region transcription start site region 86588
Gm37195 9 96219130 to 96222147 3017 + unclassified gene predicted gene, 37195
Tssr86589 9 96258697 to 96258711 14 + TSS region transcription start site region 86589
Tssr86590 9 96258714 to 96258726 12 + TSS region transcription start site region 86590
Tssr86591 9 96258728 to 96258785 57 + TSS region transcription start site region 86591
Tssr86592 9 96258791 to 96258802 11 + TSS region transcription start site region 86592
Tssr86593 9 96258806 to 96258830 24 + TSS region transcription start site region 86593
Tssr86594 9 96259008 to 96259013 5 + TSS region transcription start site region 86594
Tssr2975 9 96259220 to 96259234 14 + TSS region transcription start site region 2975
Tssr86595 9 96259246 to 96259261 15 + TSS region transcription start site region 86595
Tssr86596 9 96259270 to 96259277 7 + TSS region transcription start site region 86596
Tssr86597 9 96268478 to 96268522 44 + TSS region transcription start site region 86597
Gm28924 9 96269861 to 96270101 240 - pseudogene predicted gene 28924
Tssr86598 9 96278869 to 96278873 4 + TSS region transcription start site region 86598
Gm39408 9 96283493 to 96285269 1776 + lncRNA gene predicted gene, 39408
Tssr86599 9 96288374 to 96288378 4 + TSS region transcription start site region 86599