Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:95813116-96961813

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185 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pls1 9 95752642 to 95845306 92664 - protein coding gene plastin 1 (I-isoform)
Tssr90935 9 95815296 to 95815307 11 - TSS region transcription start site region 90935
Tssr90936 9 95815343 to 95815374 31 - TSS region transcription start site region 90936
Tssr90937 9 95815389 to 95815398 9 - TSS region transcription start site region 90937
Tssr86576 9 95815522 to 95815528 6 + TSS region transcription start site region 86576
Tssr90938 9 95819410 to 95819413 3 - TSS region transcription start site region 90938
Cpgi22157 9 95844888 to 95845536 648 CpG island CpG island 22157
Tssr90939 9 95845215 to 95845285 70 - TSS region transcription start site region 90939
1700065D16Rik 9 95855418 to 95857882 2464 - antisense lncRNA gene RIKEN cDNA 1700065D16 gene
Cpgi22158 9 95857380 to 95858504 1124 CpG island CpG island 22158
Tssr90940 9 95857559 to 95857570 11 - TSS region transcription start site region 90940
Atr 9 95857597 to 95951781 94184 + protein coding gene ataxia telangiectasia and Rad3 related
Tssr86577 9 95857628 to 95857686 58 + TSS region transcription start site region 86577
Tssr86578 9 95857694 to 95857710 16 + TSS region transcription start site region 86578
Tssr90941 9 95857864 to 95857876 12 - TSS region transcription start site region 90941
Tssr90942 9 95857881 to 95857895 14 - TSS region transcription start site region 90942
Tssr86579 9 95857944 to 95857951 7 + TSS region transcription start site region 86579
Gm24004 9 95934613 to 95934790 177 + snRNA gene predicted gene, 24004
Gm16794 9 95942045 to 95954706 12661 - antisense lncRNA gene predicted gene, 16794
Cpgi22159 9 95954570 to 95955432 862 CpG island CpG island 22159
Tssr90943 9 95954658 to 95954698 40 - TSS region transcription start site region 90943
Tssr86580 9 95954744 to 95954783 39 + TSS region transcription start site region 86580
Xrn1 9 95954760 to 96057803 103043 + protein coding gene 5'-3' exoribonuclease 1
Tssr86581 9 95954786 to 95954800 14 + TSS region transcription start site region 86581
Tssr86582 9 95954820 to 95954843 23 + TSS region transcription start site region 86582
Tssr86583 9 95955630 to 95955634 4 + TSS region transcription start site region 86583
Tssr90944 9 95959361 to 95959390 29 - TSS region transcription start site region 90944
Tssr86584 9 95991000 to 95991011 11 + TSS region transcription start site region 86584
C78334 9 96017934 to 96024740 6806 - antisense lncRNA gene expressed sequence C78334
Gm28085 9 96027101 to 96040673 13572 - antisense lncRNA gene predicted gene 28085
Gm38375 9 96028624 to 96030850 2226 + unclassified gene predicted gene, 38375
Tssr86585 9 96043605 to 96043608 3 + TSS region transcription start site region 86585
BC028454 9 96053122 to 96057798 4676 unclassified gene cDNA sequence BC028454
Cpgi22160 9 96119085 to 96119862 777 CpG island CpG island 22160
Tssr90945 9 96119191 to 96119225 34 - TSS region transcription start site region 90945
Gk5 9 96119362 to 96184608 65246 + protein coding gene glycerol kinase 5 (putative)
Tssr86586 9 96119422 to 96119437 15 + TSS region transcription start site region 86586
Cpgi22161 9 96195783 to 96197090 1307 CpG island CpG island 22161
Tssr86587 9 96196246 to 96196280 34 + TSS region transcription start site region 86587
Tfdp2 9 96196275 to 96323646 127371 + protein coding gene transcription factor Dp 2
Tssr86588 9 96196288 to 96196353 65 + TSS region transcription start site region 86588
Gm37195 9 96219130 to 96222147 3017 + unclassified gene predicted gene, 37195
Tssr86589 9 96258697 to 96258711 14 + TSS region transcription start site region 86589
Tssr86590 9 96258714 to 96258726 12 + TSS region transcription start site region 86590
Tssr86591 9 96258728 to 96258785 57 + TSS region transcription start site region 86591
Tssr86592 9 96258791 to 96258802 11 + TSS region transcription start site region 86592
Tssr86593 9 96258806 to 96258830 24 + TSS region transcription start site region 86593
Tssr86594 9 96259008 to 96259013 5 + TSS region transcription start site region 86594
Tssr2975 9 96259220 to 96259234 14 + TSS region transcription start site region 2975
Tssr86595 9 96259246 to 96259261 15 + TSS region transcription start site region 86595
Tssr86596 9 96259270 to 96259277 7 + TSS region transcription start site region 86596
Tssr86597 9 96268478 to 96268522 44 + TSS region transcription start site region 86597
Gm28924 9 96269861 to 96270101 240 - pseudogene predicted gene 28924
Tssr86598 9 96278869 to 96278873 4 + TSS region transcription start site region 86598
Gm39408 9 96283493 to 96285269 1776 + lncRNA gene predicted gene, 39408
Tssr86599 9 96288374 to 96288378 4 + TSS region transcription start site region 86599
Tssr86600 9 96322150 to 96322155 5 + TSS region transcription start site region 86600
Atp1b3 9 96332662 to 96364299 31637 - protein coding gene ATPase, Na+/K+ transporting, beta 3 polypeptide
Tssr90946 9 96333002 to 96333078 76 - TSS region transcription start site region 90946
Tssr90947 9 96333098 to 96333124 26 - TSS region transcription start site region 90947
Tssr90948 9 96333131 to 96333155 24 - TSS region transcription start site region 90948
Tssr90949 9 96333177 to 96333199 22 - TSS region transcription start site region 90949
Tssr90950 9 96333204 to 96333255 51 - TSS region transcription start site region 90950
Tssr90951 9 96333259 to 96333277 18 - TSS region transcription start site region 90951
Tssr90952 9 96333278 to 96333310 32 - TSS region transcription start site region 90952
Tssr90953 9 96333550 to 96333561 11 - TSS region transcription start site region 90953
Tssr90954 9 96349891 to 96349895 4 - TSS region transcription start site region 90954
Tssr90955 9 96358507 to 96358536 29 - TSS region transcription start site region 90955
Cpgi22162 9 96363503 to 96364889 1386 CpG island CpG island 22162
Tssr86601 9 96363924 to 96363938 14 + TSS region transcription start site region 86601
Tssr90956 9 96364299 to 96364322 23 - TSS region transcription start site region 90956
Tssr90957 9 96364407 to 96364425 18 - TSS region transcription start site region 90957
Tssr90958 9 96364431 to 96364451 20 - TSS region transcription start site region 90958
Gm39409 9 96378116 to 96396813 18697 - lncRNA gene predicted gene, 39409
Gm40550 9 96385390 to 96399984 14594 + lncRNA gene predicted gene, 40550
Tssr90959 9 96391971 to 96391981 10 - TSS region transcription start site region 90959
Tssr86602 9 96392231 to 96392247 16 + TSS region transcription start site region 86602
Tssr86603 9 96392314 to 96392316 2 + TSS region transcription start site region 86603
Tssr90960 9 96394942 to 96394951 9 - TSS region transcription start site region 90960
Tssr90961 9 96394955 to 96394971 16 - TSS region transcription start site region 90961
Tssr90962 9 96394976 to 96394995 19 - TSS region transcription start site region 90962
D9Dcr27 9 96397773 to 96397886 113 DNA segment DNA segment, Chr 9, Derry C. Roopenian 27
D9Mit274 9 96397810 to 96397888 78 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 274
Bglu14 9 96397810 to 96397888 78 QTL blood glucose level 14
BC043934 9 96435783 to 96438138 2355 - lincRNA gene cDNA sequence BC043934
Cpgi22163 9 96437028 to 96437226 198 CpG island CpG island 22163
Cpgi22164 9 96437503 to 96438219 716 CpG island CpG island 22164
Tssr90963 9 96438161 to 96438226 65 - TSS region transcription start site region 90963
Rnf7 9 96470937 to 96478675 7738 - protein coding gene ring finger protein 7
Cpgi22165 9 96478040 to 96478882 842 CpG island CpG island 22165
Tssr86604 9 96478345 to 96478361 16 + TSS region transcription start site region 86604
Tssr90964 9 96478596 to 96478622 26 - TSS region transcription start site region 90964
Tssr90965 9 96478631 to 96478647 16 - TSS region transcription start site region 90965
Tssr90966 9 96478660 to 96478669 9 - TSS region transcription start site region 90966
Tssr86605 9 96478779 to 96478806 27 + TSS region transcription start site region 86605
Tssr90967 9 96479527 to 96479536 9 - TSS region transcription start site region 90967
Gm28729 9 96486001 to 96525264 39263 - protein coding gene predicted gene 28729
Gm27289 9 96495132 to 96495213 81 - rRNA gene predicted gene, 27289
Tssr90968 9 96525245 to 96525257 12 - TSS region transcription start site region 90968
Tssr90969 9 96525259 to 96525284 25 - TSS region transcription start site region 90969
Tssr86606 9 96525303 to 96525324 21 + TSS region transcription start site region 86606
Tssr86607 9 96525327 to 96525362 35 + TSS region transcription start site region 86607
Tssr90970 9 96525406 to 96525415 9 - TSS region transcription start site region 90970
Tssr86608 9 96525564 to 96525573 9 + TSS region transcription start site region 86608
Gm46125 9 96525569 to 96606085 80516 + lncRNA gene predicted gene, 46125
Cpgi22166 9 96536881 to 96537228 347 CpG island CpG island 22166
Gm8495 9 96537187 to 96537856 669 + pseudogene predicted gene 8495
Tssr86609 9 96537269 to 96537296 27 + TSS region transcription start site region 86609
Rasa2 9 96539300 to 96631617 92317 - protein coding gene RAS p21 protein activator 2
Tssr90971 9 96539884 to 96539888 4 - TSS region transcription start site region 90971
n-R5s87 9 96549594 to 96549709 115 - rRNA gene nuclear encoded rRNA 5S 87
Gm19280 9 96584303 to 96584507 204 + pseudogene predicted gene, 19280
Tssr90972 9 96611411 to 96611424 13 - TSS region transcription start site region 90972
Tssr86610 9 96619173 to 96619203 30 + TSS region transcription start site region 86610
Cpgi22167 9 96630443 to 96631983 1540 CpG island CpG island 22167
Tssr90973 9 96630625 to 96630645 20 - TSS region transcription start site region 90973
Tssr90974 9 96630871 to 96630900 29 - TSS region transcription start site region 90974
Tssr86611 9 96630993 to 96631030 37 + TSS region transcription start site region 86611
Tssr90975 9 96631182 to 96631196 14 - TSS region transcription start site region 90975
Tssr90976 9 96631487 to 96631554 67 - TSS region transcription start site region 90976
Tssr2976 9 96636751 to 96636772 21 + TSS region transcription start site region 2976
Tssr90977 9 96637254 to 96637270 16 - TSS region transcription start site region 90977
Tssr86612 9 96637428 to 96637429 1 + TSS region transcription start site region 86612
Tssr2977 9 96650001 to 96650013 12 - TSS region transcription start site region 2977
Cpgi22168 9 96669944 to 96670129 185 CpG island CpG island 22168
Tssr90978 9 96685326 to 96685338 12 - TSS region transcription start site region 90978
Zbtb38 9 96685391 to 96731675 46284 - protein coding gene zinc finger and BTB domain containing 38
Tssr90979 9 96691749 to 96691776 27 - TSS region transcription start site region 90979
Tssr90980 9 96696377 to 96696428 51 - TSS region transcription start site region 90980
Tssr86613 9 96705804 to 96705835 31 + TSS region transcription start site region 86613
A930006L05Rik 9 96705828 to 96711449 5621 + antisense lncRNA gene RIKEN cDNA A930006L05 gene
Tssr90981 9 96713143 to 96713147 4 - TSS region transcription start site region 90981
Tssr90982 9 96713753 to 96713755 2 - TSS region transcription start site region 90982
Cpgi22169 9 96719371 to 96720247 876 CpG island CpG island 22169
Gm6328 9 96719381 to 96720299 918 unclassified gene predicted gene 6328
Tssr90983 9 96719404 to 96719479 75 - TSS region transcription start site region 90983
Tssr86614 9 96719464 to 96719518 54 + TSS region transcription start site region 86614
Tssr90984 9 96719549 to 96719564 15 - TSS region transcription start site region 90984
Tssr90985 9 96719809 to 96719889 80 - TSS region transcription start site region 90985
Tssr90986 9 96719897 to 96719982 85 - TSS region transcription start site region 90986
Tssr90987 9 96720040 to 96720059 19 - TSS region transcription start site region 90987
Tssr90988 9 96725971 to 96725975 4 - TSS region transcription start site region 90988
Tssr90989 9 96731361 to 96731372 11 - TSS region transcription start site region 90989
Tssr90990 9 96731401 to 96731415 14 - TSS region transcription start site region 90990
E030011O05Rik 9 96731575 to 96752831 21256 - lncRNA gene RIKEN cDNA E030011O05 gene
Tssr90991 9 96732174 to 96732201 27 - TSS region transcription start site region 90991
Tssr90992 9 96732217 to 96732230 13 - TSS region transcription start site region 90992
Tssr90993 9 96732271 to 96732284 13 - TSS region transcription start site region 90993
Tssr90994 9 96732300 to 96732326 26 - TSS region transcription start site region 90994
Tssr90995 9 96737605 to 96737611 6 - TSS region transcription start site region 90995
Tssr90996 9 96752653 to 96752735 82 - TSS region transcription start site region 90996
Tssr90997 9 96752822 to 96752869 47 - TSS region transcription start site region 90997
Cpgi22170 9 96759113 to 96759337 224 CpG island CpG island 22170
Tssr86615 9 96759618 to 96759633 15 + TSS region transcription start site region 86615
C430002N11Rik 9 96765562 to 96774397 8835 + lncRNA gene RIKEN cDNA C430002N11 gene
Tssr86616 9 96765572 to 96765580 8 + TSS region transcription start site region 86616
Tssr86617 9 96766811 to 96766836 25 + TSS region transcription start site region 86617
Tssr90998 9 96766859 to 96766898 39 - TSS region transcription start site region 90998
Tssr86618 9 96782456 to 96782496 40 + TSS region transcription start site region 86618
Tssr86619 9 96786315 to 96786326 11 + TSS region transcription start site region 86619
Tssr90999 9 96787742 to 96787753 11 - TSS region transcription start site region 90999
Tssr91000 9 96787756 to 96787763 7 - TSS region transcription start site region 91000
Tssr91001 9 96787843 to 96787850 7 - TSS region transcription start site region 91001
Tssr91002 9 96787865 to 96787880 15 - TSS region transcription start site region 91002
Tssr91003 9 96787881 to 96787912 31 - TSS region transcription start site region 91003
Tssr91004 9 96787914 to 96787955 41 - TSS region transcription start site region 91004
Tssr86620 9 96799786 to 96799796 10 + TSS region transcription start site region 86620
Tssr91005 9 96800515 to 96800537 22 - TSS region transcription start site region 91005
Tssr86621 9 96800625 to 96800635 10 + TSS region transcription start site region 86621
Gm28688 9 96809756 to 96810023 267 + pseudogene predicted gene 28688
Gm8520 9 96813467 to 96814334 867 - pseudogene predicted gene 8520
Pxylp1 9 96823336 to 96892669 69333 - protein coding gene 2-phosphoxylose phosphatase 1
Tssr91006 9 96854567 to 96854570 3 - TSS region transcription start site region 91006
Tssr91007 9 96862974 to 96862985 11 - TSS region transcription start site region 91007
Cpgi22171 9 96888785 to 96890040 1255 CpG island CpG island 22171
Tssr91008 9 96889381 to 96889438 57 - TSS region transcription start site region 91008
Tssr2978 9 96891496 to 96891507 11 - TSS region transcription start site region 2978
Tssr91009 9 96892666 to 96892688 22 - TSS region transcription start site region 91009
Gm10123 9 96895658 to 96896147 489 + pseudogene predicted pseudogene 10123
Tssr86622 9 96897014 to 96897027 13 + TSS region transcription start site region 86622
Tssr2979 9 96899815 to 96899850 35 - TSS region transcription start site region 2979
Tssr86623 9 96905395 to 96905404 9 + TSS region transcription start site region 86623
Gm8524 9 96905507 to 96905885 378 + pseudogene predicted gene 8524
Tssr2980 9 96911150 to 96911155 5 + TSS region transcription start site region 2980
Spsb4 9 96943482 to 97018355 74873 - protein coding gene splA/ryanodine receptor domain and SOCS box containing 4