Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:95675296-95955307

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pcolce2 9 95637628 to 95695551 57923 + protein coding gene procollagen C-endopeptidase enhancer 2
Itpa-ps2 9 95675429 to 95676017 588 - pseudogene inosine triphosphatase (nucleoside triphosphate pyrophosphatase) pseudogene 2
Trpc1 9 95705082 to 95750375 45293 - protein coding gene transient receptor potential cation channel, subfamily C, member 1
Gm39407 9 95706908 to 95708689 1781 + lncRNA gene predicted gene, 39407
Cpgi22156 9 95749412 to 95750584 1172 CpG island CpG island 22156
Tssr90926 9 95750295 to 95750333 38 - TSS region transcription start site region 90926
Tssr90927 9 95750335 to 95750368 33 - TSS region transcription start site region 90927
Pls1 9 95752642 to 95845306 92664 - protein coding gene plastin 1 (I-isoform)
Tssr90928 9 95753874 to 95753885 11 - TSS region transcription start site region 90928
Tssr90929 9 95753922 to 95753930 8 - TSS region transcription start site region 90929
Tssr90930 9 95754115 to 95754129 14 - TSS region transcription start site region 90930
Tssr90931 9 95785529 to 95785536 7 - TSS region transcription start site region 90931
Tssr90932 9 95795882 to 95795886 4 - TSS region transcription start site region 90932
Tssr90933 9 95795947 to 95795961 14 - TSS region transcription start site region 90933
Tssr90934 9 95795974 to 95795988 14 - TSS region transcription start site region 90934
Tssr2974 9 95805433 to 95805436 3 - TSS region transcription start site region 2974
Tssr90935 9 95815296 to 95815307 11 - TSS region transcription start site region 90935
Tssr90936 9 95815343 to 95815374 31 - TSS region transcription start site region 90936
Tssr90937 9 95815389 to 95815398 9 - TSS region transcription start site region 90937
Tssr86576 9 95815522 to 95815528 6 + TSS region transcription start site region 86576
Tssr90938 9 95819410 to 95819413 3 - TSS region transcription start site region 90938
Cpgi22157 9 95844888 to 95845536 648 CpG island CpG island 22157
Tssr90939 9 95845215 to 95845285 70 - TSS region transcription start site region 90939
1700065D16Rik 9 95855418 to 95857882 2464 - antisense lncRNA gene RIKEN cDNA 1700065D16 gene
Cpgi22158 9 95857380 to 95858504 1124 CpG island CpG island 22158
Tssr90940 9 95857559 to 95857570 11 - TSS region transcription start site region 90940
Atr 9 95857597 to 95951781 94184 + protein coding gene ataxia telangiectasia and Rad3 related
Tssr86577 9 95857628 to 95857686 58 + TSS region transcription start site region 86577
Tssr86578 9 95857694 to 95857710 16 + TSS region transcription start site region 86578
Tssr90941 9 95857864 to 95857876 12 - TSS region transcription start site region 90941
Tssr90942 9 95857881 to 95857895 14 - TSS region transcription start site region 90942
Tssr86579 9 95857944 to 95857951 7 + TSS region transcription start site region 86579
Gm24004 9 95934613 to 95934790 177 + snRNA gene predicted gene, 24004
Gm16794 9 95942045 to 95954706 12661 - antisense lncRNA gene predicted gene, 16794
Cpgi22159 9 95954570 to 95955432 862 CpG island CpG island 22159
Tssr90943 9 95954658 to 95954698 40 - TSS region transcription start site region 90943
Tssr86580 9 95954744 to 95954783 39 + TSS region transcription start site region 86580
Xrn1 9 95954760 to 96057803 103043 + protein coding gene 5'-3' exoribonuclease 1
Tssr86581 9 95954786 to 95954800 14 + TSS region transcription start site region 86581
Tssr86582 9 95954820 to 95954843 23 + TSS region transcription start site region 86582