Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:95593122-96517798

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130 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Psl6 9 65133909 to 95640755 30506846 QTL promotion susceptibility QTL 6
Gm32542 9 95581428 to 95593332 11904 + lncRNA gene predicted gene, 32542
Cpgi22153 9 95598293 to 95598575 282 CpG island CpG island 22153
Tssr90924 9 95606664 to 95606665 1 - TSS region transcription start site region 90924
Tssr90925 9 95614731 to 95614751 20 - TSS region transcription start site region 90925
Gm16126 9 95618911 to 95648471 29560 - antisense lncRNA gene predicted gene 16126
Gm28164 9 95621978 to 95622419 441 - pseudogene predicted gene 28164
Gm25582 9 95624502 to 95624611 109 + snoRNA gene predicted gene, 25582
Gm16127 9 95636972 to 95638265 1293 - unclassified non-coding RNA gene predicted gene 16127
Cpgi22154 9 95637335 to 95638256 921 CpG island CpG island 22154
Tssr86572 9 95637412 to 95637424 12 + TSS region transcription start site region 86572
Tssr86573 9 95637623 to 95637632 9 + TSS region transcription start site region 86573
Pcolce2 9 95637628 to 95695551 57923 + protein coding gene procollagen C-endopeptidase enhancer 2
Tssr86574 9 95637652 to 95637656 4 + TSS region transcription start site region 86574
Tssr86575 9 95637731 to 95637746 15 + TSS region transcription start site region 86575
Skts6 9 95640645 to 95640755 110 QTL skin tumor susceptibility 6
D9Mit76 9 95640645 to 95640755 110 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 76
Cpgi22155 9 95670022 to 95670351 329 CpG island CpG island 22155
Itpa-ps2 9 95675429 to 95676017 588 - pseudogene inosine triphosphatase (nucleoside triphosphate pyrophosphatase) pseudogene 2
Trpc1 9 95705082 to 95750375 45293 - protein coding gene transient receptor potential cation channel, subfamily C, member 1
Gm39407 9 95706908 to 95708689 1781 + lncRNA gene predicted gene, 39407
Cpgi22156 9 95749412 to 95750584 1172 CpG island CpG island 22156
Tssr90926 9 95750295 to 95750333 38 - TSS region transcription start site region 90926
Tssr90927 9 95750335 to 95750368 33 - TSS region transcription start site region 90927
Pls1 9 95752642 to 95845306 92664 - protein coding gene plastin 1 (I-isoform)
Tssr90928 9 95753874 to 95753885 11 - TSS region transcription start site region 90928
Tssr90929 9 95753922 to 95753930 8 - TSS region transcription start site region 90929
Tssr90930 9 95754115 to 95754129 14 - TSS region transcription start site region 90930
Tssr90931 9 95785529 to 95785536 7 - TSS region transcription start site region 90931
Tssr90932 9 95795882 to 95795886 4 - TSS region transcription start site region 90932
Tssr90933 9 95795947 to 95795961 14 - TSS region transcription start site region 90933
Tssr90934 9 95795974 to 95795988 14 - TSS region transcription start site region 90934
Tssr2974 9 95805433 to 95805436 3 - TSS region transcription start site region 2974
Tssr90935 9 95815296 to 95815307 11 - TSS region transcription start site region 90935
Tssr90936 9 95815343 to 95815374 31 - TSS region transcription start site region 90936
Tssr90937 9 95815389 to 95815398 9 - TSS region transcription start site region 90937
Tssr86576 9 95815522 to 95815528 6 + TSS region transcription start site region 86576
Tssr90938 9 95819410 to 95819413 3 - TSS region transcription start site region 90938
Cpgi22157 9 95844888 to 95845536 648 CpG island CpG island 22157
Tssr90939 9 95845215 to 95845285 70 - TSS region transcription start site region 90939
1700065D16Rik 9 95855418 to 95857882 2464 - antisense lncRNA gene RIKEN cDNA 1700065D16 gene
Cpgi22158 9 95857380 to 95858504 1124 CpG island CpG island 22158
Tssr90940 9 95857559 to 95857570 11 - TSS region transcription start site region 90940
Atr 9 95857597 to 95951781 94184 + protein coding gene ataxia telangiectasia and Rad3 related
Tssr86577 9 95857628 to 95857686 58 + TSS region transcription start site region 86577
Tssr86578 9 95857694 to 95857710 16 + TSS region transcription start site region 86578
Tssr90941 9 95857864 to 95857876 12 - TSS region transcription start site region 90941
Tssr90942 9 95857881 to 95857895 14 - TSS region transcription start site region 90942
Tssr86579 9 95857944 to 95857951 7 + TSS region transcription start site region 86579
Gm24004 9 95934613 to 95934790 177 + snRNA gene predicted gene, 24004
Gm16794 9 95942045 to 95954706 12661 - antisense lncRNA gene predicted gene, 16794
Cpgi22159 9 95954570 to 95955432 862 CpG island CpG island 22159
Tssr90943 9 95954658 to 95954698 40 - TSS region transcription start site region 90943
Tssr86580 9 95954744 to 95954783 39 + TSS region transcription start site region 86580
Xrn1 9 95954760 to 96057803 103043 + protein coding gene 5'-3' exoribonuclease 1
Tssr86581 9 95954786 to 95954800 14 + TSS region transcription start site region 86581
Tssr86582 9 95954820 to 95954843 23 + TSS region transcription start site region 86582
Tssr86583 9 95955630 to 95955634 4 + TSS region transcription start site region 86583
Tssr90944 9 95959361 to 95959390 29 - TSS region transcription start site region 90944
Tssr86584 9 95991000 to 95991011 11 + TSS region transcription start site region 86584
C78334 9 96017934 to 96024740 6806 - antisense lncRNA gene expressed sequence C78334
Gm28085 9 96027101 to 96040673 13572 - antisense lncRNA gene predicted gene 28085
Gm38375 9 96028624 to 96030850 2226 + unclassified gene predicted gene, 38375
Tssr86585 9 96043605 to 96043608 3 + TSS region transcription start site region 86585
BC028454 9 96053122 to 96057798 4676 unclassified gene cDNA sequence BC028454
Cpgi22160 9 96119085 to 96119862 777 CpG island CpG island 22160
Tssr90945 9 96119191 to 96119225 34 - TSS region transcription start site region 90945
Gk5 9 96119362 to 96184608 65246 + protein coding gene glycerol kinase 5 (putative)
Tssr86586 9 96119422 to 96119437 15 + TSS region transcription start site region 86586
Cpgi22161 9 96195783 to 96197090 1307 CpG island CpG island 22161
Tssr86587 9 96196246 to 96196280 34 + TSS region transcription start site region 86587
Tfdp2 9 96196275 to 96323646 127371 + protein coding gene transcription factor Dp 2
Tssr86588 9 96196288 to 96196353 65 + TSS region transcription start site region 86588
Gm37195 9 96219130 to 96222147 3017 + unclassified gene predicted gene, 37195
Tssr86589 9 96258697 to 96258711 14 + TSS region transcription start site region 86589
Tssr86590 9 96258714 to 96258726 12 + TSS region transcription start site region 86590
Tssr86591 9 96258728 to 96258785 57 + TSS region transcription start site region 86591
Tssr86592 9 96258791 to 96258802 11 + TSS region transcription start site region 86592
Tssr86593 9 96258806 to 96258830 24 + TSS region transcription start site region 86593
Tssr86594 9 96259008 to 96259013 5 + TSS region transcription start site region 86594
Tssr2975 9 96259220 to 96259234 14 + TSS region transcription start site region 2975
Tssr86595 9 96259246 to 96259261 15 + TSS region transcription start site region 86595
Tssr86596 9 96259270 to 96259277 7 + TSS region transcription start site region 86596
Tssr86597 9 96268478 to 96268522 44 + TSS region transcription start site region 86597
Gm28924 9 96269861 to 96270101 240 - pseudogene predicted gene 28924
Tssr86598 9 96278869 to 96278873 4 + TSS region transcription start site region 86598
Gm39408 9 96283493 to 96285269 1776 + lncRNA gene predicted gene, 39408
Tssr86599 9 96288374 to 96288378 4 + TSS region transcription start site region 86599
Tssr86600 9 96322150 to 96322155 5 + TSS region transcription start site region 86600
Atp1b3 9 96332662 to 96364299 31637 - protein coding gene ATPase, Na+/K+ transporting, beta 3 polypeptide
Tssr90946 9 96333002 to 96333078 76 - TSS region transcription start site region 90946
Tssr90947 9 96333098 to 96333124 26 - TSS region transcription start site region 90947
Tssr90948 9 96333131 to 96333155 24 - TSS region transcription start site region 90948
Tssr90949 9 96333177 to 96333199 22 - TSS region transcription start site region 90949
Tssr90950 9 96333204 to 96333255 51 - TSS region transcription start site region 90950
Tssr90951 9 96333259 to 96333277 18 - TSS region transcription start site region 90951
Tssr90952 9 96333278 to 96333310 32 - TSS region transcription start site region 90952
Tssr90953 9 96333550 to 96333561 11 - TSS region transcription start site region 90953
Tssr90954 9 96349891 to 96349895 4 - TSS region transcription start site region 90954
Tssr90955 9 96358507 to 96358536 29 - TSS region transcription start site region 90955
Cpgi22162 9 96363503 to 96364889 1386 CpG island CpG island 22162
Tssr86601 9 96363924 to 96363938 14 + TSS region transcription start site region 86601
Tssr90956 9 96364299 to 96364322 23 - TSS region transcription start site region 90956
Tssr90957 9 96364407 to 96364425 18 - TSS region transcription start site region 90957
Tssr90958 9 96364431 to 96364451 20 - TSS region transcription start site region 90958
Gm39409 9 96378116 to 96396813 18697 - lncRNA gene predicted gene, 39409
Gm40550 9 96385390 to 96399984 14594 + lncRNA gene predicted gene, 40550
Tssr90959 9 96391971 to 96391981 10 - TSS region transcription start site region 90959
Tssr86602 9 96392231 to 96392247 16 + TSS region transcription start site region 86602
Tssr86603 9 96392314 to 96392316 2 + TSS region transcription start site region 86603
Tssr90960 9 96394942 to 96394951 9 - TSS region transcription start site region 90960
Tssr90961 9 96394955 to 96394971 16 - TSS region transcription start site region 90961
Tssr90962 9 96394976 to 96394995 19 - TSS region transcription start site region 90962
D9Dcr27 9 96397773 to 96397886 113 DNA segment DNA segment, Chr 9, Derry C. Roopenian 27
D9Mit274 9 96397810 to 96397888 78 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 274
Bglu14 9 96397810 to 96397888 78 QTL blood glucose level 14
BC043934 9 96435783 to 96438138 2355 - lincRNA gene cDNA sequence BC043934
Cpgi22163 9 96437028 to 96437226 198 CpG island CpG island 22163
Cpgi22164 9 96437503 to 96438219 716 CpG island CpG island 22164
Tssr90963 9 96438161 to 96438226 65 - TSS region transcription start site region 90963
Rnf7 9 96470937 to 96478675 7738 - protein coding gene ring finger protein 7
Cpgi22165 9 96478040 to 96478882 842 CpG island CpG island 22165
Tssr86604 9 96478345 to 96478361 16 + TSS region transcription start site region 86604
Tssr90964 9 96478596 to 96478622 26 - TSS region transcription start site region 90964
Tssr90965 9 96478631 to 96478647 16 - TSS region transcription start site region 90965
Tssr90966 9 96478660 to 96478669 9 - TSS region transcription start site region 90966
Tssr86605 9 96478779 to 96478806 27 + TSS region transcription start site region 86605
Tssr90967 9 96479527 to 96479536 9 - TSS region transcription start site region 90967
Gm28729 9 96486001 to 96525264 39263 - protein coding gene predicted gene 28729
Gm27289 9 96495132 to 96495213 81 - rRNA gene predicted gene, 27289