Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:94272767-99141675

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523 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Alpq3 9 37394901 to 98819654 61424753 QTL alcohol preference QTL 3
Psl6 9 65133909 to 95640755 30506846 QTL promotion susceptibility QTL 6
Habiir4 9 69360465 to 98819654 29459189 QTL hyperoxic acute lung injury imprinted region 4
Gm24200 9 94284496 to 94284652 156 + snRNA gene predicted gene, 24200
D9Mit344 9 94370094 to 94370218 124 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 344
Gm5370 9 94407553 to 94408126 573 - pseudogene predicted gene 5370
Gm28934 9 94416558 to 94416903 345 + pseudogene predicted gene 28934
D9Mit50 9 94440886 to 94441044 158 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 50
D9Dcr26 9 94440926 to 94441037 111 DNA segment DNA segment, Chr 9, Derry C. Roopenian 26
Gm46148 9 94471086 to 94473236 2150 - lncRNA gene predicted gene, 46148
Tssr86525 9 94473356 to 94473362 6 + TSS region transcription start site region 86525
Gm31957 9 94473374 to 94477684 4310 + lncRNA gene predicted gene, 31957
Dipk2a 9 94517864 to 94538081 20217 - protein coding gene divergent protein kinase domain 2A
Tssr90891 9 94533122 to 94533129 7 - TSS region transcription start site region 90891
Tssr90892 9 94533783 to 94533810 27 - TSS region transcription start site region 90892
Tssr90893 9 94533824 to 94533833 9 - TSS region transcription start site region 90893
Cpgi22148 9 94536872 to 94539125 2253 CpG island CpG island 22148
Tssr90894 9 94538004 to 94538053 49 - TSS region transcription start site region 90894
Tssr90895 9 94538075 to 94538089 14 - TSS region transcription start site region 90895
Tssr90896 9 94538239 to 94538247 8 - TSS region transcription start site region 90896
Tssr90897 9 94538261 to 94538307 46 - TSS region transcription start site region 90897
Gm39404 9 94592196 to 94592508 312 + lncRNA gene predicted gene, 39404
Gm24178 9 94644019 to 94644114 95 + snRNA gene predicted gene, 24178
Gm29395 9 94667208 to 94668818 1610 - lincRNA gene predicted gene 29395
Tssr86526 9 94668866 to 94668882 16 + TSS region transcription start site region 86526
Tssr86527 9 94668895 to 94668912 17 + TSS region transcription start site region 86527
Tssr86528 9 94669619 to 94669641 22 + TSS region transcription start site region 86528
Tssr86529 9 94669876 to 94669928 52 + TSS region transcription start site region 86529
Slc9a9 9 94669909 to 95230445 560536 + protein coding gene solute carrier family 9 (sodium/hydrogen exchanger), member 9
Tssr86530 9 94669945 to 94669956 11 + TSS region transcription start site region 86530
Tssr86531 9 94669974 to 94669985 11 + TSS region transcription start site region 86531
Gm16262 9 94695704 to 94702319 6615 - antisense lncRNA gene predicted gene 16262
Tssr86532 9 94696968 to 94696986 18 + TSS region transcription start site region 86532
Tssr90898 9 94702353 to 94702376 23 - TSS region transcription start site region 90898
Tssr86533 9 94713477 to 94713488 11 + TSS region transcription start site region 86533
Tssr86534 9 94713559 to 94713573 14 + TSS region transcription start site region 86534
Tssr86535 9 94743289 to 94743299 10 + TSS region transcription start site region 86535
Tssr86536 9 94743528 to 94743545 17 + TSS region transcription start site region 86536
Mir7656 9 94751829 to 94751890 61 + miRNA gene microRNA 7656
Tssr86537 9 94770209 to 94770210 1 + TSS region transcription start site region 86537
Tssr86538 9 94772824 to 94772829 5 + TSS region transcription start site region 86538
Cpgi22149 9 94837409 to 94837626 217 CpG island CpG island 22149
Tssr86539 9 94946061 to 94946065 4 + TSS region transcription start site region 86539
Tssr86540 9 94971816 to 94971822 6 + TSS region transcription start site region 86540
D9Mit112 9 94981301 to 94981419 118 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 112
D9Mit112.1 9 94981424 to 94981548 124 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 112.1
Gm47168 9 94992015 to 94992684 669 - pseudogene predicted gene, 47168
Tssr86541 9 95028598 to 95028611 13 + TSS region transcription start site region 86541
Tssr86542 9 95047859 to 95047862 3 + TSS region transcription start site region 86542
Tssr86543 9 95162922 to 95162941 19 + TSS region transcription start site region 86543
Tssr86544 9 95168201 to 95168221 20 + TSS region transcription start site region 86544
Tssr86545 9 95192922 to 95192926 4 + TSS region transcription start site region 86545
Gm32018 9 95300733 to 95310543 9810 - lncRNA gene predicted gene, 32018
Tssr86546 9 95392803 to 95392806 3 + TSS region transcription start site region 86546
Chst2 9 95400926 to 95407270 6344 - protein coding gene carbohydrate sulfotransferase 2
Tssr90899 9 95401048 to 95401053 5 - TSS region transcription start site region 90899
Tssr90900 9 95402238 to 95402242 4 - TSS region transcription start site region 90900
Tssr90901 9 95404509 to 95404541 32 - TSS region transcription start site region 90901
Tssr90902 9 95404542 to 95404561 19 - TSS region transcription start site region 90902
Tssr90903 9 95404734 to 95404748 14 - TSS region transcription start site region 90903
Cpgi22150 9 95404967 to 95407927 2960 CpG island CpG island 22150
Tssr90904 9 95407108 to 95407119 11 - TSS region transcription start site region 90904
Tssr90905 9 95407184 to 95407191 7 - TSS region transcription start site region 90905
Tssr90906 9 95407201 to 95407212 11 - TSS region transcription start site region 90906
Tssr90907 9 95407227 to 95407239 12 - TSS region transcription start site region 90907
Tssr90908 9 95407240 to 95407276 36 - TSS region transcription start site region 90908
Tssr90909 9 95407281 to 95407299 18 - TSS region transcription start site region 90909
Tssr90910 9 95407303 to 95407333 30 - TSS region transcription start site region 90910
Tssr90911 9 95407350 to 95407361 11 - TSS region transcription start site region 90911
Tssr86547 9 95407425 to 95407439 14 + TSS region transcription start site region 86547
Gm37805 9 95407461 to 95408554 1093 + unclassified gene predicted gene, 37805
Tssr90912 9 95407767 to 95407779 12 - TSS region transcription start site region 90912
Gm8449 9 95410669 to 95411656 987 - pseudogene predicted gene 8449
Gm19193 9 95425631 to 95426360 729 + pseudogene predicted gene, 19193
Gm32133 9 95436951 to 95445368 8417 - lncRNA gene predicted gene, 32133
U2surp 9 95456898 to 95511996 55098 - protein coding gene U2 snRNP-associated SURP domain containing
Tssr90913 9 95460095 to 95460099 4 - TSS region transcription start site region 90913
Tssr90914 9 95462601 to 95462605 4 - TSS region transcription start site region 90914
Tssr90915 9 95472092 to 95472120 28 - TSS region transcription start site region 90915
Tssr90916 9 95474464 to 95474485 21 - TSS region transcription start site region 90916
Tssr90917 9 95489802 to 95489819 17 - TSS region transcription start site region 90917
Tssr90918 9 95489855 to 95489877 22 - TSS region transcription start site region 90918
Cpgi22151 9 95511259 to 95512592 1333 CpG island CpG island 22151
Tssr86548 9 95511267 to 95511289 22 + TSS region transcription start site region 86548
Tssr90919 9 95511857 to 95511892 35 - TSS region transcription start site region 90919
Tssr90920 9 95511897 to 95511908 11 - TSS region transcription start site region 90920
Gm28424 9 95512151 to 95513469 1318 + antisense lncRNA gene predicted gene 28424
Tssr90921 9 95543126 to 95543140 14 - TSS region transcription start site region 90921
D9Mit1004 9 95553401 to 95553641 240 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1004
Tssr86549 9 95554415 to 95554422 7 + TSS region transcription start site region 86549
Tssr86550 9 95554509 to 95554522 13 + TSS region transcription start site region 86550
Tssr86551 9 95557227 to 95557236 9 + TSS region transcription start site region 86551
Tssr86552 9 95557239 to 95557252 13 + TSS region transcription start site region 86552
Gm32281 9 95558517 to 95559191 674 + lincRNA gene predicted gene, 32281
Cpgi22152 9 95558925 to 95560992 2067 CpG island CpG island 22152
Tssr90922 9 95558953 to 95558983 30 - TSS region transcription start site region 90922
Tssr86553 9 95559079 to 95559096 17 + TSS region transcription start site region 86553
Tssr86554 9 95559119 to 95559148 29 + TSS region transcription start site region 86554
Tssr86555 9 95559149 to 95559161 12 + TSS region transcription start site region 86555
Tssr86556 9 95559320 to 95559331 11 + TSS region transcription start site region 86556
Tssr86557 9 95559349 to 95559367 18 + TSS region transcription start site region 86557
Tssr86558 9 95559371 to 95559391 20 + TSS region transcription start site region 86558
Tssr86559 9 95559533 to 95559544 11 + TSS region transcription start site region 86559
Tssr86560 9 95559571 to 95559583 12 + TSS region transcription start site region 86560
Tssr86561 9 95559599 to 95559652 53 + TSS region transcription start site region 86561
Tssr86562 9 95559661 to 95559705 44 + TSS region transcription start site region 86562
Paqr9 9 95559817 to 95562121 2304 + protein coding gene progestin and adipoQ receptor family member IX
Tssr86563 9 95559915 to 95559960 45 + TSS region transcription start site region 86563
Tssr86564 9 95560036 to 95560045 9 + TSS region transcription start site region 86564
Tssr86565 9 95560397 to 95560430 33 + TSS region transcription start site region 86565
Tssr86566 9 95560433 to 95560448 15 + TSS region transcription start site region 86566
Tssr86567 9 95561091 to 95561107 16 + TSS region transcription start site region 86567
Tssr86568 9 95561559 to 95561562 3 + TSS region transcription start site region 86568
Tssr86569 9 95563754 to 95563757 3 + TSS region transcription start site region 86569
Tssr86570 9 95564468 to 95564472 4 + TSS region transcription start site region 86570
C730029A08Rik 9 95566174 to 95568022 1848 unclassified non-coding RNA gene RIKEN cDNA C730029A08 gene
Tssr90923 9 95577697 to 95577730 33 - TSS region transcription start site region 90923
Gm32542 9 95581428 to 95593332 11904 + lncRNA gene predicted gene, 32542
Tssr86571 9 95581484 to 95581502 18 + TSS region transcription start site region 86571
Cpgi22153 9 95598293 to 95598575 282 CpG island CpG island 22153
Tssr90924 9 95606664 to 95606665 1 - TSS region transcription start site region 90924
Tssr90925 9 95614731 to 95614751 20 - TSS region transcription start site region 90925
Gm16126 9 95618911 to 95648471 29560 - antisense lncRNA gene predicted gene 16126
Gm28164 9 95621978 to 95622419 441 - pseudogene predicted gene 28164
Gm25582 9 95624502 to 95624611 109 + snoRNA gene predicted gene, 25582
Gm16127 9 95636972 to 95638265 1293 - unclassified non-coding RNA gene predicted gene 16127
Cpgi22154 9 95637335 to 95638256 921 CpG island CpG island 22154
Tssr86572 9 95637412 to 95637424 12 + TSS region transcription start site region 86572
Tssr86573 9 95637623 to 95637632 9 + TSS region transcription start site region 86573
Pcolce2 9 95637628 to 95695551 57923 + protein coding gene procollagen C-endopeptidase enhancer 2
Tssr86574 9 95637652 to 95637656 4 + TSS region transcription start site region 86574
Tssr86575 9 95637731 to 95637746 15 + TSS region transcription start site region 86575
Skts6 9 95640645 to 95640755 110 QTL skin tumor susceptibility 6
D9Mit76 9 95640645 to 95640755 110 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 76
Cpgi22155 9 95670022 to 95670351 329 CpG island CpG island 22155
Itpa-ps2 9 95675429 to 95676017 588 - pseudogene inosine triphosphatase (nucleoside triphosphate pyrophosphatase) pseudogene 2
Trpc1 9 95705082 to 95750375 45293 - protein coding gene transient receptor potential cation channel, subfamily C, member 1
Gm39407 9 95706908 to 95708689 1781 + lncRNA gene predicted gene, 39407
Cpgi22156 9 95749412 to 95750584 1172 CpG island CpG island 22156
Tssr90926 9 95750295 to 95750333 38 - TSS region transcription start site region 90926
Tssr90927 9 95750335 to 95750368 33 - TSS region transcription start site region 90927
Pls1 9 95752642 to 95845306 92664 - protein coding gene plastin 1 (I-isoform)
Tssr90928 9 95753874 to 95753885 11 - TSS region transcription start site region 90928
Tssr90929 9 95753922 to 95753930 8 - TSS region transcription start site region 90929
Tssr90930 9 95754115 to 95754129 14 - TSS region transcription start site region 90930
Tssr90931 9 95785529 to 95785536 7 - TSS region transcription start site region 90931
Tssr90932 9 95795882 to 95795886 4 - TSS region transcription start site region 90932
Tssr90933 9 95795947 to 95795961 14 - TSS region transcription start site region 90933
Tssr90934 9 95795974 to 95795988 14 - TSS region transcription start site region 90934
Tssr2974 9 95805433 to 95805436 3 - TSS region transcription start site region 2974
Tssr90935 9 95815296 to 95815307 11 - TSS region transcription start site region 90935
Tssr90936 9 95815343 to 95815374 31 - TSS region transcription start site region 90936
Tssr90937 9 95815389 to 95815398 9 - TSS region transcription start site region 90937
Tssr86576 9 95815522 to 95815528 6 + TSS region transcription start site region 86576
Tssr90938 9 95819410 to 95819413 3 - TSS region transcription start site region 90938
Cpgi22157 9 95844888 to 95845536 648 CpG island CpG island 22157
Tssr90939 9 95845215 to 95845285 70 - TSS region transcription start site region 90939
1700065D16Rik 9 95855418 to 95857882 2464 - antisense lncRNA gene RIKEN cDNA 1700065D16 gene
Cpgi22158 9 95857380 to 95858504 1124 CpG island CpG island 22158
Tssr90940 9 95857559 to 95857570 11 - TSS region transcription start site region 90940
Atr 9 95857597 to 95951781 94184 + protein coding gene ataxia telangiectasia and Rad3 related
Tssr86577 9 95857628 to 95857686 58 + TSS region transcription start site region 86577
Tssr86578 9 95857694 to 95857710 16 + TSS region transcription start site region 86578
Tssr90941 9 95857864 to 95857876 12 - TSS region transcription start site region 90941
Tssr90942 9 95857881 to 95857895 14 - TSS region transcription start site region 90942
Tssr86579 9 95857944 to 95857951 7 + TSS region transcription start site region 86579
Gm24004 9 95934613 to 95934790 177 + snRNA gene predicted gene, 24004
Gm16794 9 95942045 to 95954706 12661 - antisense lncRNA gene predicted gene, 16794
Cpgi22159 9 95954570 to 95955432 862 CpG island CpG island 22159
Tssr90943 9 95954658 to 95954698 40 - TSS region transcription start site region 90943
Tssr86580 9 95954744 to 95954783 39 + TSS region transcription start site region 86580
Xrn1 9 95954760 to 96057803 103043 + protein coding gene 5'-3' exoribonuclease 1
Tssr86581 9 95954786 to 95954800 14 + TSS region transcription start site region 86581
Tssr86582 9 95954820 to 95954843 23 + TSS region transcription start site region 86582
Tssr86583 9 95955630 to 95955634 4 + TSS region transcription start site region 86583
Tssr90944 9 95959361 to 95959390 29 - TSS region transcription start site region 90944
Tssr86584 9 95991000 to 95991011 11 + TSS region transcription start site region 86584
C78334 9 96017934 to 96024740 6806 - antisense lncRNA gene expressed sequence C78334
Gm28085 9 96027101 to 96040673 13572 - antisense lncRNA gene predicted gene 28085
Gm38375 9 96028624 to 96030850 2226 + unclassified gene predicted gene, 38375
Tssr86585 9 96043605 to 96043608 3 + TSS region transcription start site region 86585
BC028454 9 96053122 to 96057798 4676 unclassified gene cDNA sequence BC028454
Cpgi22160 9 96119085 to 96119862 777 CpG island CpG island 22160
Tssr90945 9 96119191 to 96119225 34 - TSS region transcription start site region 90945
Gk5 9 96119362 to 96184608 65246 + protein coding gene glycerol kinase 5 (putative)
Tssr86586 9 96119422 to 96119437 15 + TSS region transcription start site region 86586
Cpgi22161 9 96195783 to 96197090 1307 CpG island CpG island 22161
Tssr86587 9 96196246 to 96196280 34 + TSS region transcription start site region 86587
Tfdp2 9 96196275 to 96323646 127371 + protein coding gene transcription factor Dp 2
Tssr86588 9 96196288 to 96196353 65 + TSS region transcription start site region 86588
Gm37195 9 96219130 to 96222147 3017 + unclassified gene predicted gene, 37195
Tssr86589 9 96258697 to 96258711 14 + TSS region transcription start site region 86589
Tssr86590 9 96258714 to 96258726 12 + TSS region transcription start site region 86590
Tssr86591 9 96258728 to 96258785 57 + TSS region transcription start site region 86591
Tssr86592 9 96258791 to 96258802 11 + TSS region transcription start site region 86592
Tssr86593 9 96258806 to 96258830 24 + TSS region transcription start site region 86593
Tssr86594 9 96259008 to 96259013 5 + TSS region transcription start site region 86594
Tssr2975 9 96259220 to 96259234 14 + TSS region transcription start site region 2975
Tssr86595 9 96259246 to 96259261 15 + TSS region transcription start site region 86595
Tssr86596 9 96259270 to 96259277 7 + TSS region transcription start site region 86596