Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:93800886-95081044

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52 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr86524 9 93853897 to 93853898 1 + TSS region transcription start site region 86524
Gm39401 9 93970748 to 93980149 9401 - lncRNA gene predicted gene, 39401
Gm31847 9 93980270 to 94190340 210070 - lncRNA gene predicted gene, 31847
Gm39403 9 94108183 to 94118886 10703 + lncRNA gene predicted gene, 39403
Gm5369 9 94139462 to 94140049 587 + pseudogene predicted gene 5369
Gm24200 9 94284496 to 94284652 156 + snRNA gene predicted gene, 24200
D9Mit344 9 94370094 to 94370218 124 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 344
Gm5370 9 94407553 to 94408126 573 - pseudogene predicted gene 5370
Gm28934 9 94416558 to 94416903 345 + pseudogene predicted gene 28934
D9Mit50 9 94440886 to 94441044 158 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 50
D9Dcr26 9 94440926 to 94441037 111 DNA segment DNA segment, Chr 9, Derry C. Roopenian 26
Gm46148 9 94471086 to 94473236 2150 - lncRNA gene predicted gene, 46148
Tssr86525 9 94473356 to 94473362 6 + TSS region transcription start site region 86525
Gm31957 9 94473374 to 94477684 4310 + lncRNA gene predicted gene, 31957
Dipk2a 9 94517864 to 94538081 20217 - protein coding gene divergent protein kinase domain 2A
Tssr90891 9 94533122 to 94533129 7 - TSS region transcription start site region 90891
Tssr90892 9 94533783 to 94533810 27 - TSS region transcription start site region 90892
Tssr90893 9 94533824 to 94533833 9 - TSS region transcription start site region 90893
Cpgi22148 9 94536872 to 94539125 2253 CpG island CpG island 22148
Tssr90894 9 94538004 to 94538053 49 - TSS region transcription start site region 90894
Tssr90895 9 94538075 to 94538089 14 - TSS region transcription start site region 90895
Tssr90896 9 94538239 to 94538247 8 - TSS region transcription start site region 90896
Tssr90897 9 94538261 to 94538307 46 - TSS region transcription start site region 90897
Gm39404 9 94592196 to 94592508 312 + lncRNA gene predicted gene, 39404
Gm24178 9 94644019 to 94644114 95 + snRNA gene predicted gene, 24178
Gm29395 9 94667208 to 94668818 1610 - lincRNA gene predicted gene 29395
Tssr86526 9 94668866 to 94668882 16 + TSS region transcription start site region 86526
Tssr86527 9 94668895 to 94668912 17 + TSS region transcription start site region 86527
Tssr86528 9 94669619 to 94669641 22 + TSS region transcription start site region 86528
Tssr86529 9 94669876 to 94669928 52 + TSS region transcription start site region 86529
Slc9a9 9 94669909 to 95230445 560536 + protein coding gene solute carrier family 9 (sodium/hydrogen exchanger), member 9
Tssr86530 9 94669945 to 94669956 11 + TSS region transcription start site region 86530
Tssr86531 9 94669974 to 94669985 11 + TSS region transcription start site region 86531
Gm16262 9 94695704 to 94702319 6615 - antisense lncRNA gene predicted gene 16262
Tssr86532 9 94696968 to 94696986 18 + TSS region transcription start site region 86532
Tssr90898 9 94702353 to 94702376 23 - TSS region transcription start site region 90898
Tssr86533 9 94713477 to 94713488 11 + TSS region transcription start site region 86533
Tssr86534 9 94713559 to 94713573 14 + TSS region transcription start site region 86534
Tssr86535 9 94743289 to 94743299 10 + TSS region transcription start site region 86535
Tssr86536 9 94743528 to 94743545 17 + TSS region transcription start site region 86536
Mir7656 9 94751829 to 94751890 61 + miRNA gene microRNA 7656
Tssr86537 9 94770209 to 94770210 1 + TSS region transcription start site region 86537
Tssr86538 9 94772824 to 94772829 5 + TSS region transcription start site region 86538
Cpgi22149 9 94837409 to 94837626 217 CpG island CpG island 22149
Tssr86539 9 94946061 to 94946065 4 + TSS region transcription start site region 86539
Tssr86540 9 94971816 to 94971822 6 + TSS region transcription start site region 86540
D9Mit112 9 94981301 to 94981419 118 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 112
D9Mit112.1 9 94981424 to 94981548 124 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 112.1
Gm47168 9 94992015 to 94992684 669 - pseudogene predicted gene, 47168
Tssr86541 9 95028598 to 95028611 13 + TSS region transcription start site region 86541
Tssr86542 9 95047859 to 95047862 3 + TSS region transcription start site region 86542
Psl5 9 112872929 to 94981301 -17891628 QTL promotion susceptibility QTL 5