Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:9172414-10382526

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27 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Arhgap42 9 8994329 to 9239101 244772 - protein coding gene Rho GTPase activating protein 42
Tssr88124 9 9227503 to 9227507 4 - TSS region transcription start site region 88124
Gm16833 9 9236288 to 9260883 24595 + antisense lncRNA gene predicted gene, 16833
Cpgi21349 9 9238483 to 9239490 1007 CpG island CpG island 21349
Tssr88125 9 9238950 to 9238964 14 - TSS region transcription start site region 88125
Tssr88126 9 9238989 to 9239001 12 - TSS region transcription start site region 88126
Tssr88127 9 9239019 to 9239042 23 - TSS region transcription start site region 88127
Tssr88128 9 9239052 to 9239095 43 - TSS region transcription start site region 88128
Tssr88129 9 9239107 to 9239124 17 - TSS region transcription start site region 88129
Tssr88130 9 9269358 to 9269396 38 - TSS region transcription start site region 88130
Gm22815 9 9301391 to 9301452 61 + snRNA gene predicted gene, 22815
Gm47333 9 9434592 to 9434893 301 + pseudogene predicted gene, 47333
Tssr83796 9 9434628 to 9434653 25 + TSS region transcription start site region 83796
Gm47334 9 9564087 to 9583564 19477 + lincRNA gene predicted gene, 47334
Gm46102 9 9579337 to 9619784 40447 - lincRNA gene predicted gene, 46102
Gm26195 9 9670941 to 9671041 100 - miRNA gene predicted gene, 26195
D9Mit1011 9 9777414 to 9777526 112 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1011
D9Mit1010 9 9777520 to 9777668 148 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1010
Mir6237 9 9894431 to 9894521 90 + miRNA gene microRNA 6237
D9Dcr136 9 10009317 to 10009416 99 DNA segment DNA Segment, Chr 9, Derry C. Roopenian 136
D9Mit43 9 10079318 to 10079449 131 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 43
Gm39289 9 10080457 to 10092882 12425 + lncRNA gene predicted gene, 39289
Tssr83797 9 10080484 to 10080527 43 + TSS region transcription start site region 83797
Gm24496 9 10290478 to 10290587 109 - miRNA gene predicted gene, 24496
Gm25086 9 10295047 to 10295156 109 - miRNA gene predicted gene, 25086
D9Mit251 9 10324074 to 10324198 124 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 251
Cntn5 9 10904775 to 9660891 -1243884 - protein coding gene contactin 5