Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:90619944-92109957

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm30905 9 90687386 to 90704932 17546 - lncRNA gene predicted gene, 30905
Gm2497 9 90732924 to 90733524 600 - pseudogene predicted gene 2497
Gm29605 9 90734145 to 90734436 291 - pseudogene predicted gene 29605
Gm29604 9 90747380 to 90747542 162 - pseudogene predicted gene 29604
D9Mit308 9 90761793 to 90761915 122 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 308
D9Dcr25 9 90761796 to 90761902 106 DNA segment DNA segment, Chr 9, Derry C. Roopenian 25
Gm28703 9 90825302 to 90828860 3558 - lincRNA gene predicted gene 28703
Tssr90859 9 90828847 to 90828861 14 - TSS region transcription start site region 90859
Gm37665 9 90863159 to 90863307 148 + unclassified gene predicted gene, 37665
Gm31114 9 90907005 to 90933945 26940 - lncRNA gene predicted gene, 31114
Gm20561 9 90907906 to 90908197 291 - pseudogene predicted gene, 20561
Gm29408 9 90938980 to 90939195 215 + lincRNA gene predicted gene 29408
Tssr90860 9 91051104 to 91051106 2 - TSS region transcription start site region 90860
Tssr90861 9 91085825 to 91085865 40 - TSS region transcription start site region 90861
Tssr86474 9 91097042 to 91097043 1 + TSS region transcription start site region 86474
Gm5620 9 91097149 to 91098496 1347 + pseudogene predicted gene 5620
Tssr90862 9 91102174 to 91102184 10 - TSS region transcription start site region 90862
Gm36960 9 91128484 to 91130518 2034 - unclassified gene predicted gene, 36960
Tssr90863 9 91130388 to 91130399 11 - TSS region transcription start site region 90863
Tssr90864 9 91130477 to 91130488 11 - TSS region transcription start site region 90864
Gm29602 9 91216015 to 91216456 441 + pseudogene predicted gene 29602
Gm37812 9 91270930 to 91273404 2474 - unclassified gene predicted gene, 37812
D9Mit198 9 91281970 to 91282118 148 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 198
Gm18378 9 91290996 to 91291617 621 + pseudogene predicted gene, 18378
Gm40546 9 91316202 to 91354063 37861 - lncRNA gene predicted gene, 40546
Gm37457 9 91325416 to 91327848 2432 - unclassified gene predicted gene, 37457
Gm37040 9 91335244 to 91337067 1823 - unclassified gene predicted gene, 37040
Gm28652 9 91337601 to 91340878 3277 + lincRNA gene predicted gene 28652
A730094K22Rik 9 91350214 to 91350953 739 - lncRNA gene RIKEN cDNA A730094K22 gene
Cpgi22135 9 91350815 to 91351047 232 CpG island CpG island 22135
Tssr90865 9 91350911 to 91350965 54 - TSS region transcription start site region 90865
Gm40545 9 91351166 to 91352489 1323 + lncRNA gene predicted gene, 40545
Cpgi22136 9 91353581 to 91354098 517 CpG island CpG island 22136
Cpgi22137 9 91355641 to 91355866 225 CpG island CpG island 22137
Zic1 9 91358058 to 91365810 7752 - protein coding gene zinc finger protein of the cerebellum 1
Tssr90866 9 91360998 to 91361015 17 - TSS region transcription start site region 90866
Tssr90867 9 91361065 to 91361076 11 - TSS region transcription start site region 90867
Cpgi22138 9 91361458 to 91362646 1188 CpG island CpG island 22138
Tssr90868 9 91361619 to 91361633 14 - TSS region transcription start site region 90868
Tssr90869 9 91361698 to 91361718 20 - TSS region transcription start site region 90869
Tssr90870 9 91361735 to 91361746 11 - TSS region transcription start site region 90870
Tssr86475 9 91362095 to 91362116 21 + TSS region transcription start site region 86475
Tssr90871 9 91362613 to 91362622 9 - TSS region transcription start site region 90871
Cpgi22139 9 91363952 to 91366119 2167 CpG island CpG island 22139
Tssr90872 9 91364873 to 91364887 14 - TSS region transcription start site region 90872
Tssr90873 9 91364944 to 91364957 13 - TSS region transcription start site region 90873
Tssr90874 9 91364979 to 91365013 34 - TSS region transcription start site region 90874
Tssr90875 9 91365143 to 91365153 10 - TSS region transcription start site region 90875
Tssr90876 9 91365345 to 91365362 17 - TSS region transcription start site region 90876
Tssr90877 9 91365410 to 91365421 11 - TSS region transcription start site region 90877
Tssr90878 9 91365756 to 91365774 18 - TSS region transcription start site region 90878
Tssr90879 9 91365778 to 91365815 37 - TSS region transcription start site region 90879
Zic4 9 91365825 to 91389351 23526 + protein coding gene zinc finger protein of the cerebellum 4
Tssr86476 9 91365959 to 91365969 10 + TSS region transcription start site region 86476
Tssr90880 9 91368152 to 91368173 21 - TSS region transcription start site region 90880
Lifespan1 9 91368177 to 91368325 148 QTL life span 1
D9Mit110 9 91368177 to 91368325 148 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 110
Tssr86477 9 91368335 to 91368382 47 + TSS region transcription start site region 86477
Tssr86478 9 91368811 to 91368828 17 + TSS region transcription start site region 86478
Tssr86479 9 91369041 to 91369073 32 + TSS region transcription start site region 86479
Tssr86480 9 91371423 to 91371444 21 + TSS region transcription start site region 86480
Tssr86481 9 91377960 to 91377985 25 + TSS region transcription start site region 86481
Tssr86482 9 91378348 to 91378373 25 + TSS region transcription start site region 86482
Cpgi22140 9 91378453 to 91379325 872 CpG island CpG island 22140
Tssr86483 9 91378574 to 91378582 8 + TSS region transcription start site region 86483
Tssr86484 9 91378614 to 91378623 9 + TSS region transcription start site region 86484
Tssr86485 9 91378636 to 91378646 10 + TSS region transcription start site region 86485
Gm37477 9 91380519 to 91381402 883 - unclassified gene predicted gene, 37477
Tssr86486 9 91380689 to 91380706 17 + TSS region transcription start site region 86486
Cpgi22141 9 91381277 to 91382134 857 CpG island CpG island 22141
Tssr90881 9 91381421 to 91381432 11 - TSS region transcription start site region 90881
Cpgi22142 9 91383756 to 91384528 772 CpG island CpG island 22142
Tssr90882 9 91385193 to 91385197 4 - TSS region transcription start site region 90882
Cpgi22143 9 91387023 to 91387270 247 CpG island CpG island 22143
Tssr86487 9 91403465 to 91403474 9 + TSS region transcription start site region 86487
Gm29478 9 91404474 to 91562818 158344 + lincRNA gene predicted gene 29478
Tssr86488 9 91404500 to 91404531 31 + TSS region transcription start site region 86488
Cpgi22144 9 91405829 to 91406231 402 CpG island CpG island 22144
Tssr86489 9 91437849 to 91437854 5 + TSS region transcription start site region 86489
Gm39400 9 91707711 to 91772768 65057 + lncRNA gene predicted gene, 39400
Gm37987 9 91757322 to 91758146 824 - unclassified gene predicted gene, 37987
Gm26101 9 91839770 to 91839874 104 + snRNA gene predicted gene, 26101
Gm31409 9 91922664 to 91961118 38454 - lincRNA gene predicted gene, 31409
Tssr90883 9 91961128 to 91961141 13 - TSS region transcription start site region 90883
Tssr90884 9 91961169 to 91961179 10 - TSS region transcription start site region 90884