Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:90380959-92350969

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130 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm39398 9 90458976 to 90482876 23900 + lncRNA gene predicted gene, 39398
Gm30905 9 90687386 to 90704932 17546 - lncRNA gene predicted gene, 30905
Gm2497 9 90732924 to 90733524 600 - pseudogene predicted gene 2497
Gm29605 9 90734145 to 90734436 291 - pseudogene predicted gene 29605
Gm29604 9 90747380 to 90747542 162 - pseudogene predicted gene 29604
D9Mit308 9 90761793 to 90761915 122 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 308
D9Dcr25 9 90761796 to 90761902 106 DNA segment DNA segment, Chr 9, Derry C. Roopenian 25
Gm28703 9 90825302 to 90828860 3558 - lincRNA gene predicted gene 28703
Tssr90859 9 90828847 to 90828861 14 - TSS region transcription start site region 90859
Gm37665 9 90863159 to 90863307 148 + unclassified gene predicted gene, 37665
Gm31114 9 90907005 to 90933945 26940 - lncRNA gene predicted gene, 31114
Gm20561 9 90907906 to 90908197 291 - pseudogene predicted gene, 20561
Gm29408 9 90938980 to 90939195 215 + lincRNA gene predicted gene 29408
Tssr90860 9 91051104 to 91051106 2 - TSS region transcription start site region 90860
Tssr90861 9 91085825 to 91085865 40 - TSS region transcription start site region 90861
Tssr86474 9 91097042 to 91097043 1 + TSS region transcription start site region 86474
Gm5620 9 91097149 to 91098496 1347 + pseudogene predicted gene 5620
Tssr90862 9 91102174 to 91102184 10 - TSS region transcription start site region 90862
Gm36960 9 91128484 to 91130518 2034 - unclassified gene predicted gene, 36960
Tssr90863 9 91130388 to 91130399 11 - TSS region transcription start site region 90863
Tssr90864 9 91130477 to 91130488 11 - TSS region transcription start site region 90864
Gm29602 9 91216015 to 91216456 441 + pseudogene predicted gene 29602
Gm37812 9 91270930 to 91273404 2474 - unclassified gene predicted gene, 37812
D9Mit198 9 91281970 to 91282118 148 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 198
Gm18378 9 91290996 to 91291617 621 + pseudogene predicted gene, 18378
Gm40546 9 91316202 to 91354063 37861 - lncRNA gene predicted gene, 40546
Gm37457 9 91325416 to 91327848 2432 - unclassified gene predicted gene, 37457
Gm37040 9 91335244 to 91337067 1823 - unclassified gene predicted gene, 37040
Gm28652 9 91337601 to 91340878 3277 + lincRNA gene predicted gene 28652
A730094K22Rik 9 91350214 to 91350953 739 - lncRNA gene RIKEN cDNA A730094K22 gene
Cpgi22135 9 91350815 to 91351047 232 CpG island CpG island 22135
Tssr90865 9 91350911 to 91350965 54 - TSS region transcription start site region 90865
Gm40545 9 91351166 to 91352489 1323 + lncRNA gene predicted gene, 40545
Cpgi22136 9 91353581 to 91354098 517 CpG island CpG island 22136
Cpgi22137 9 91355641 to 91355866 225 CpG island CpG island 22137
Zic1 9 91358058 to 91365810 7752 - protein coding gene zinc finger protein of the cerebellum 1
Tssr90866 9 91360998 to 91361015 17 - TSS region transcription start site region 90866
Tssr90867 9 91361065 to 91361076 11 - TSS region transcription start site region 90867
Cpgi22138 9 91361458 to 91362646 1188 CpG island CpG island 22138
Tssr90868 9 91361619 to 91361633 14 - TSS region transcription start site region 90868
Tssr90869 9 91361698 to 91361718 20 - TSS region transcription start site region 90869
Tssr90870 9 91361735 to 91361746 11 - TSS region transcription start site region 90870
Tssr86475 9 91362095 to 91362116 21 + TSS region transcription start site region 86475
Tssr90871 9 91362613 to 91362622 9 - TSS region transcription start site region 90871
Cpgi22139 9 91363952 to 91366119 2167 CpG island CpG island 22139
Tssr90872 9 91364873 to 91364887 14 - TSS region transcription start site region 90872
Tssr90873 9 91364944 to 91364957 13 - TSS region transcription start site region 90873
Tssr90874 9 91364979 to 91365013 34 - TSS region transcription start site region 90874
Tssr90875 9 91365143 to 91365153 10 - TSS region transcription start site region 90875
Tssr90876 9 91365345 to 91365362 17 - TSS region transcription start site region 90876
Tssr90877 9 91365410 to 91365421 11 - TSS region transcription start site region 90877
Tssr90878 9 91365756 to 91365774 18 - TSS region transcription start site region 90878
Tssr90879 9 91365778 to 91365815 37 - TSS region transcription start site region 90879
Zic4 9 91365825 to 91389351 23526 + protein coding gene zinc finger protein of the cerebellum 4
Tssr86476 9 91365959 to 91365969 10 + TSS region transcription start site region 86476
Tssr90880 9 91368152 to 91368173 21 - TSS region transcription start site region 90880
Lifespan1 9 91368177 to 91368325 148 QTL life span 1
D9Mit110 9 91368177 to 91368325 148 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 110
Tssr86477 9 91368335 to 91368382 47 + TSS region transcription start site region 86477
Tssr86478 9 91368811 to 91368828 17 + TSS region transcription start site region 86478
Tssr86479 9 91369041 to 91369073 32 + TSS region transcription start site region 86479
Tssr86480 9 91371423 to 91371444 21 + TSS region transcription start site region 86480
Tssr86481 9 91377960 to 91377985 25 + TSS region transcription start site region 86481
Tssr86482 9 91378348 to 91378373 25 + TSS region transcription start site region 86482
Cpgi22140 9 91378453 to 91379325 872 CpG island CpG island 22140
Tssr86483 9 91378574 to 91378582 8 + TSS region transcription start site region 86483
Tssr86484 9 91378614 to 91378623 9 + TSS region transcription start site region 86484
Tssr86485 9 91378636 to 91378646 10 + TSS region transcription start site region 86485
Gm37477 9 91380519 to 91381402 883 - unclassified gene predicted gene, 37477
Tssr86486 9 91380689 to 91380706 17 + TSS region transcription start site region 86486
Cpgi22141 9 91381277 to 91382134 857 CpG island CpG island 22141
Tssr90881 9 91381421 to 91381432 11 - TSS region transcription start site region 90881
Cpgi22142 9 91383756 to 91384528 772 CpG island CpG island 22142
Tssr90882 9 91385193 to 91385197 4 - TSS region transcription start site region 90882
Cpgi22143 9 91387023 to 91387270 247 CpG island CpG island 22143
Tssr86487 9 91403465 to 91403474 9 + TSS region transcription start site region 86487
Gm29478 9 91404474 to 91562818 158344 + lincRNA gene predicted gene 29478
Tssr86488 9 91404500 to 91404531 31 + TSS region transcription start site region 86488
Cpgi22144 9 91405829 to 91406231 402 CpG island CpG island 22144
Tssr86489 9 91437849 to 91437854 5 + TSS region transcription start site region 86489
Gm39400 9 91707711 to 91772768 65057 + lncRNA gene predicted gene, 39400
Gm37987 9 91757322 to 91758146 824 - unclassified gene predicted gene, 37987
Gm26101 9 91839770 to 91839874 104 + snRNA gene predicted gene, 26101
Gm31409 9 91922664 to 91961118 38454 - lincRNA gene predicted gene, 31409
Tssr90883 9 91961128 to 91961141 13 - TSS region transcription start site region 90883
Tssr90884 9 91961169 to 91961179 10 - TSS region transcription start site region 90884
Gm46147 9 92143362 to 92175188 31826 - lncRNA gene predicted gene, 46147
Gm31588 9 92186967 to 92228744 41777 - lncRNA gene predicted gene, 31588
Plscr5 9 92192936 to 92209772 16836 + protein coding gene phospholipid scramblase family, member 5
Tssr86490 9 92193088 to 92193100 12 + TSS region transcription start site region 86490
Tssr86491 9 92193101 to 92193118 17 + TSS region transcription start site region 86491
Tssr86492 9 92193152 to 92193157 5 + TSS region transcription start site region 86492
Gm31531 9 92201834 to 92207771 5937 - lncRNA gene predicted gene, 31531
Tssr86493 9 92222286 to 92222287 1 + TSS region transcription start site region 86493
Tssr90885 9 92227242 to 92227265 23 - TSS region transcription start site region 90885
Tssr90886 9 92227269 to 92227285 16 - TSS region transcription start site region 90886
Tssr86494 9 92249656 to 92249667 11 + TSS region transcription start site region 86494
Tssr86495 9 92249678 to 92249689 11 + TSS region transcription start site region 86495
Tssr86496 9 92249715 to 92249729 14 + TSS region transcription start site region 86496
Tssr86497 9 92249749 to 92249753 4 + TSS region transcription start site region 86497
Tssr86498 9 92250026 to 92250034 8 + TSS region transcription start site region 86498
Tssr86499 9 92250039 to 92250060 21 + TSS region transcription start site region 86499
Tssr86500 9 92250061 to 92250068 7 + TSS region transcription start site region 86500
Tssr86501 9 92250083 to 92250098 15 + TSS region transcription start site region 86501
Tssr86502 9 92250124 to 92250127 3 + TSS region transcription start site region 86502
Tssr86503 9 92250165 to 92250187 22 + TSS region transcription start site region 86503
Plscr1 9 92250194 to 92272561 22367 + protein coding gene phospholipid scramblase 1
Tssr86504 9 92250195 to 92250274 79 + TSS region transcription start site region 86504
Cpgi22145 9 92250211 to 92250756 545 CpG island CpG island 22145
Tssr86505 9 92250296 to 92250311 15 + TSS region transcription start site region 86505
Tssr90887 9 92250472 to 92250486 14 - TSS region transcription start site region 90887
Tssr90888 9 92250510 to 92250528 18 - TSS region transcription start site region 90888
Mir6386 9 92267258 to 92267361 103 - miRNA gene microRNA 6386
Plscr2 9 92275602 to 92297752 22150 + protein coding gene phospholipid scramblase 2
Tssr86506 9 92275675 to 92275687 12 + TSS region transcription start site region 86506
Tssr86507 9 92275690 to 92275702 12 + TSS region transcription start site region 86507
Tssr86508 9 92275704 to 92275740 36 + TSS region transcription start site region 86508
Tssr86509 9 92275751 to 92275767 16 + TSS region transcription start site region 86509
Tssr86510 9 92275772 to 92275785 13 + TSS region transcription start site region 86510
Tssr86511 9 92275786 to 92275795 9 + TSS region transcription start site region 86511
Tssr2972 9 92275798 to 92275799 1 + TSS region transcription start site region 2972
Tssr86512 9 92275814 to 92275825 11 + TSS region transcription start site region 86512
Tssr86513 9 92275874 to 92275892 18 + TSS region transcription start site region 86513
Tssr86514 9 92275895 to 92275906 11 + TSS region transcription start site region 86514
Tssr86515 9 92275908 to 92275919 11 + TSS region transcription start site region 86515
Gm29139 9 92301963 to 92305144 3181 - lincRNA gene predicted gene 29139
Tssr86516 9 92309362 to 92309386 24 + TSS region transcription start site region 86516
1700057G04Rik 9 92309377 to 92357876 48499 + protein coding gene RIKEN cDNA 1700057G04 gene
Tssr86517 9 92309391 to 92309401 10 + TSS region transcription start site region 86517
Gm15493 9 92334552 to 92335079 527 - pseudogene predicted gene 15493