Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:90075410-92655421

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196 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ctsh 9 90054267 to 90076095 21828 + protein coding gene cathepsin H
Morf4l1 9 90091665 to 90114774 23109 - protein coding gene mortality factor 4 like 1
Gm26882 9 90094178 to 90095902 1724 + lincRNA gene predicted gene, 26882
Tssr90844 9 90096730 to 90096734 4 - TSS region transcription start site region 90844
Tssr90845 9 90107032 to 90107035 3 - TSS region transcription start site region 90845
Cpgi22131 9 90113688 to 90115229 1541 CpG island CpG island 22131
Tssr86460 9 90113935 to 90113965 30 + TSS region transcription start site region 86460
Tssr90846 9 90114358 to 90114383 25 - TSS region transcription start site region 90846
Tssr90847 9 90114677 to 90114786 109 - TSS region transcription start site region 90847
Tssr90848 9 90114788 to 90114797 9 - TSS region transcription start site region 90848
Tssr90849 9 90114812 to 90114821 9 - TSS region transcription start site region 90849
Gm6223 9 90118937 to 90119807 870 + pseudogene predicted gene 6223
n-TKctt18 9 90126509 to 90126581 72 - tRNA gene nuclear encoded tRNA lysine 18 (anticodon CTT)
9430062P05Rik 9 90156460 to 90159804 3344 - unclassified gene RIKEN cDNA 9430062P05 gene
Cpgi22132 9 90162751 to 90164139 1388 CpG island CpG island 22132
Adamts7 9 90162978 to 90200102 37124 + protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7
Tssr86461 9 90163008 to 90163037 29 + TSS region transcription start site region 86461
Tssr86462 9 90163057 to 90163101 44 + TSS region transcription start site region 86462
Tssr86463 9 90163102 to 90163120 18 + TSS region transcription start site region 86463
Tssr86464 9 90163166 to 90163173 7 + TSS region transcription start site region 86464
Tssr86465 9 90164882 to 90164886 4 + TSS region transcription start site region 86465
Cpgi22133 9 90171431 to 90171672 241 CpG island CpG island 22133
Tssr86466 9 90198688 to 90198722 34 + TSS region transcription start site region 86466
Tbc1d2b 9 90202047 to 90270769 68722 - protein coding gene TBC1 domain family, member 2B
Tssr90850 9 90202685 to 90202733 48 - TSS region transcription start site region 90850
Gm16200 9 90221295 to 90221625 330 - pseudogene predicted gene 16200
Tssr90851 9 90237616 to 90237617 1 - TSS region transcription start site region 90851
Tssr90852 9 90237999 to 90238022 23 - TSS region transcription start site region 90852
Tssr2969 9 90242996 to 90243001 5 - TSS region transcription start site region 2969
Tssr90853 9 90243019 to 90243033 14 - TSS region transcription start site region 90853
Tssr90854 9 90243113 to 90243120 7 - TSS region transcription start site region 90854
Tssr90855 9 90243121 to 90243133 12 - TSS region transcription start site region 90855
Tssr2970 9 90243139 to 90243147 8 - TSS region transcription start site region 2970
Tssr86467 9 90243301 to 90243312 11 + TSS region transcription start site region 86467
Tssr2971 9 90245301 to 90245350 49 - TSS region transcription start site region 2971
Tssr86468 9 90245426 to 90245435 9 + TSS region transcription start site region 86468
Tssr86469 9 90245441 to 90245453 12 + TSS region transcription start site region 86469
Tssr86470 9 90245465 to 90245475 10 + TSS region transcription start site region 86470
Tssr86471 9 90245487 to 90245502 15 + TSS region transcription start site region 86471
Tssr90856 9 90250529 to 90250563 34 - TSS region transcription start site region 90856
Tssr90857 9 90255932 to 90255943 11 - TSS region transcription start site region 90857
Cpgi22134 9 90270067 to 90270978 911 CpG island CpG island 22134
Tssr90858 9 90270712 to 90270799 87 - TSS region transcription start site region 90858
Gm30849 9 90315448 to 90317639 2191 + lincRNA gene predicted gene, 30849
Tssr86472 9 90315909 to 90315925 16 + TSS region transcription start site region 86472
Gm22717 9 90315910 to 90316080 170 + snRNA gene predicted gene, 22717
Tssr86473 9 90351992 to 90351998 6 + TSS region transcription start site region 86473
Gm22866 9 90351995 to 90352171 176 + snRNA gene predicted gene, 22866
Gm39398 9 90458976 to 90482876 23900 + lncRNA gene predicted gene, 39398
Gm30905 9 90687386 to 90704932 17546 - lncRNA gene predicted gene, 30905
Gm2497 9 90732924 to 90733524 600 - pseudogene predicted gene 2497
Gm29605 9 90734145 to 90734436 291 - pseudogene predicted gene 29605
Gm29604 9 90747380 to 90747542 162 - pseudogene predicted gene 29604
D9Mit308 9 90761793 to 90761915 122 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 308
D9Dcr25 9 90761796 to 90761902 106 DNA segment DNA segment, Chr 9, Derry C. Roopenian 25
Gm28703 9 90825302 to 90828860 3558 - lincRNA gene predicted gene 28703
Tssr90859 9 90828847 to 90828861 14 - TSS region transcription start site region 90859
Gm37665 9 90863159 to 90863307 148 + unclassified gene predicted gene, 37665
Gm31114 9 90907005 to 90933945 26940 - lncRNA gene predicted gene, 31114
Gm20561 9 90907906 to 90908197 291 - pseudogene predicted gene, 20561
Gm29408 9 90938980 to 90939195 215 + lincRNA gene predicted gene 29408
Tssr90860 9 91051104 to 91051106 2 - TSS region transcription start site region 90860
Tssr90861 9 91085825 to 91085865 40 - TSS region transcription start site region 90861
Tssr86474 9 91097042 to 91097043 1 + TSS region transcription start site region 86474
Gm5620 9 91097149 to 91098496 1347 + pseudogene predicted gene 5620
Tssr90862 9 91102174 to 91102184 10 - TSS region transcription start site region 90862
Gm36960 9 91128484 to 91130518 2034 - unclassified gene predicted gene, 36960
Tssr90863 9 91130388 to 91130399 11 - TSS region transcription start site region 90863
Tssr90864 9 91130477 to 91130488 11 - TSS region transcription start site region 90864
Gm29602 9 91216015 to 91216456 441 + pseudogene predicted gene 29602
Gm37812 9 91270930 to 91273404 2474 - unclassified gene predicted gene, 37812
D9Mit198 9 91281970 to 91282118 148 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 198
Gm18378 9 91290996 to 91291617 621 + pseudogene predicted gene, 18378
Gm40546 9 91316202 to 91354063 37861 - lncRNA gene predicted gene, 40546
Gm37457 9 91325416 to 91327848 2432 - unclassified gene predicted gene, 37457
Gm37040 9 91335244 to 91337067 1823 - unclassified gene predicted gene, 37040
Gm28652 9 91337601 to 91340878 3277 + lincRNA gene predicted gene 28652
A730094K22Rik 9 91350214 to 91350953 739 - lncRNA gene RIKEN cDNA A730094K22 gene
Cpgi22135 9 91350815 to 91351047 232 CpG island CpG island 22135
Tssr90865 9 91350911 to 91350965 54 - TSS region transcription start site region 90865
Gm40545 9 91351166 to 91352489 1323 + lncRNA gene predicted gene, 40545
Cpgi22136 9 91353581 to 91354098 517 CpG island CpG island 22136
Cpgi22137 9 91355641 to 91355866 225 CpG island CpG island 22137
Zic1 9 91358058 to 91365810 7752 - protein coding gene zinc finger protein of the cerebellum 1
Tssr90866 9 91360998 to 91361015 17 - TSS region transcription start site region 90866
Tssr90867 9 91361065 to 91361076 11 - TSS region transcription start site region 90867
Cpgi22138 9 91361458 to 91362646 1188 CpG island CpG island 22138
Tssr90868 9 91361619 to 91361633 14 - TSS region transcription start site region 90868
Tssr90869 9 91361698 to 91361718 20 - TSS region transcription start site region 90869
Tssr90870 9 91361735 to 91361746 11 - TSS region transcription start site region 90870
Tssr86475 9 91362095 to 91362116 21 + TSS region transcription start site region 86475
Tssr90871 9 91362613 to 91362622 9 - TSS region transcription start site region 90871
Cpgi22139 9 91363952 to 91366119 2167 CpG island CpG island 22139
Tssr90872 9 91364873 to 91364887 14 - TSS region transcription start site region 90872
Tssr90873 9 91364944 to 91364957 13 - TSS region transcription start site region 90873
Tssr90874 9 91364979 to 91365013 34 - TSS region transcription start site region 90874
Tssr90875 9 91365143 to 91365153 10 - TSS region transcription start site region 90875
Tssr90876 9 91365345 to 91365362 17 - TSS region transcription start site region 90876
Tssr90877 9 91365410 to 91365421 11 - TSS region transcription start site region 90877
Tssr90878 9 91365756 to 91365774 18 - TSS region transcription start site region 90878
Tssr90879 9 91365778 to 91365815 37 - TSS region transcription start site region 90879
Zic4 9 91365825 to 91389351 23526 + protein coding gene zinc finger protein of the cerebellum 4
Tssr86476 9 91365959 to 91365969 10 + TSS region transcription start site region 86476
Tssr90880 9 91368152 to 91368173 21 - TSS region transcription start site region 90880
D9Mit110 9 91368177 to 91368325 148 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 110
Lifespan1 9 91368177 to 91368325 148 QTL life span 1
Tssr86477 9 91368335 to 91368382 47 + TSS region transcription start site region 86477
Tssr86478 9 91368811 to 91368828 17 + TSS region transcription start site region 86478
Tssr86479 9 91369041 to 91369073 32 + TSS region transcription start site region 86479
Tssr86480 9 91371423 to 91371444 21 + TSS region transcription start site region 86480
Tssr86481 9 91377960 to 91377985 25 + TSS region transcription start site region 86481
Tssr86482 9 91378348 to 91378373 25 + TSS region transcription start site region 86482
Cpgi22140 9 91378453 to 91379325 872 CpG island CpG island 22140
Tssr86483 9 91378574 to 91378582 8 + TSS region transcription start site region 86483
Tssr86484 9 91378614 to 91378623 9 + TSS region transcription start site region 86484
Tssr86485 9 91378636 to 91378646 10 + TSS region transcription start site region 86485
Gm37477 9 91380519 to 91381402 883 - unclassified gene predicted gene, 37477
Tssr86486 9 91380689 to 91380706 17 + TSS region transcription start site region 86486
Cpgi22141 9 91381277 to 91382134 857 CpG island CpG island 22141
Tssr90881 9 91381421 to 91381432 11 - TSS region transcription start site region 90881
Cpgi22142 9 91383756 to 91384528 772 CpG island CpG island 22142
Tssr90882 9 91385193 to 91385197 4 - TSS region transcription start site region 90882
Cpgi22143 9 91387023 to 91387270 247 CpG island CpG island 22143
Tssr86487 9 91403465 to 91403474 9 + TSS region transcription start site region 86487
Gm29478 9 91404474 to 91562818 158344 + lincRNA gene predicted gene 29478
Tssr86488 9 91404500 to 91404531 31 + TSS region transcription start site region 86488
Cpgi22144 9 91405829 to 91406231 402 CpG island CpG island 22144
Tssr86489 9 91437849 to 91437854 5 + TSS region transcription start site region 86489
Gm39400 9 91707711 to 91772768 65057 + lncRNA gene predicted gene, 39400
Gm37987 9 91757322 to 91758146 824 - unclassified gene predicted gene, 37987
Gm26101 9 91839770 to 91839874 104 + snRNA gene predicted gene, 26101
Gm31409 9 91922664 to 91961118 38454 - lincRNA gene predicted gene, 31409
Tssr90883 9 91961128 to 91961141 13 - TSS region transcription start site region 90883
Tssr90884 9 91961169 to 91961179 10 - TSS region transcription start site region 90884
Gm46147 9 92143362 to 92175188 31826 - lncRNA gene predicted gene, 46147
Gm31588 9 92186967 to 92228744 41777 - lncRNA gene predicted gene, 31588
Plscr5 9 92192936 to 92209772 16836 + protein coding gene phospholipid scramblase family, member 5
Tssr86490 9 92193088 to 92193100 12 + TSS region transcription start site region 86490
Tssr86491 9 92193101 to 92193118 17 + TSS region transcription start site region 86491
Tssr86492 9 92193152 to 92193157 5 + TSS region transcription start site region 86492
Gm31531 9 92201834 to 92207771 5937 - lncRNA gene predicted gene, 31531
Tssr86493 9 92222286 to 92222287 1 + TSS region transcription start site region 86493
Tssr90885 9 92227242 to 92227265 23 - TSS region transcription start site region 90885
Tssr90886 9 92227269 to 92227285 16 - TSS region transcription start site region 90886
Tssr86494 9 92249656 to 92249667 11 + TSS region transcription start site region 86494
Tssr86495 9 92249678 to 92249689 11 + TSS region transcription start site region 86495
Tssr86496 9 92249715 to 92249729 14 + TSS region transcription start site region 86496
Tssr86497 9 92249749 to 92249753 4 + TSS region transcription start site region 86497
Tssr86498 9 92250026 to 92250034 8 + TSS region transcription start site region 86498
Tssr86499 9 92250039 to 92250060 21 + TSS region transcription start site region 86499
Tssr86500 9 92250061 to 92250068 7 + TSS region transcription start site region 86500
Tssr86501 9 92250083 to 92250098 15 + TSS region transcription start site region 86501
Tssr86502 9 92250124 to 92250127 3 + TSS region transcription start site region 86502
Tssr86503 9 92250165 to 92250187 22 + TSS region transcription start site region 86503
Plscr1 9 92250194 to 92272561 22367 + protein coding gene phospholipid scramblase 1
Tssr86504 9 92250195 to 92250274 79 + TSS region transcription start site region 86504
Cpgi22145 9 92250211 to 92250756 545 CpG island CpG island 22145
Tssr86505 9 92250296 to 92250311 15 + TSS region transcription start site region 86505
Tssr90887 9 92250472 to 92250486 14 - TSS region transcription start site region 90887
Tssr90888 9 92250510 to 92250528 18 - TSS region transcription start site region 90888
Mir6386 9 92267258 to 92267361 103 - miRNA gene microRNA 6386
Plscr2 9 92275602 to 92297752 22150 + protein coding gene phospholipid scramblase 2
Tssr86506 9 92275675 to 92275687 12 + TSS region transcription start site region 86506
Tssr86507 9 92275690 to 92275702 12 + TSS region transcription start site region 86507
Tssr86508 9 92275704 to 92275740 36 + TSS region transcription start site region 86508
Tssr86509 9 92275751 to 92275767 16 + TSS region transcription start site region 86509
Tssr86510 9 92275772 to 92275785 13 + TSS region transcription start site region 86510
Tssr86511 9 92275786 to 92275795 9 + TSS region transcription start site region 86511
Tssr2972 9 92275798 to 92275799 1 + TSS region transcription start site region 2972
Tssr86512 9 92275814 to 92275825 11 + TSS region transcription start site region 86512
Tssr86513 9 92275874 to 92275892 18 + TSS region transcription start site region 86513
Tssr86514 9 92275895 to 92275906 11 + TSS region transcription start site region 86514
Tssr86515 9 92275908 to 92275919 11 + TSS region transcription start site region 86515
Gm29139 9 92301963 to 92305144 3181 - lincRNA gene predicted gene 29139
Tssr86516 9 92309362 to 92309386 24 + TSS region transcription start site region 86516
1700057G04Rik 9 92309377 to 92357876 48499 + protein coding gene RIKEN cDNA 1700057G04 gene
Tssr86517 9 92309391 to 92309401 10 + TSS region transcription start site region 86517
Gm15493 9 92334552 to 92335079 527 - pseudogene predicted gene 15493
Tssr90889 9 92436525 to 92436539 14 - TSS region transcription start site region 90889
Tssr86518 9 92457369 to 92457389 20 + TSS region transcription start site region 86518
Plscr4 9 92457373 to 92492456 35083 + protein coding gene phospholipid scramblase 4
Cpgi22146 9 92457603 to 92458266 663 CpG island CpG island 22146
Tssr86519 9 92457786 to 92457896 110 + TSS region transcription start site region 86519
D9Mit273 9 92477549 to 92477669 120 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 273
D9Mit273.2 9 92477668 to 92477801 133 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 273.2
Gm25417 9 92527578 to 92527708 130 - snoRNA gene predicted gene, 25417
D9Mit272 9 92532755 to 92532859 104 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 272
B430319G15Rik 9 92538801 to 92542869 4068 - lncRNA gene RIKEN cDNA B430319G15 gene
Gm38391 9 92538801 to 92542869 4068 - unclassified gene predicted gene, 38391
Gm37545 9 92539936 to 92540083 147 - pseudogene predicted gene, 37545
Cpgi22147 9 92541857 to 92542977 1120 CpG island CpG island 22147
Plod2 9 92542223 to 92608428 66205 + protein coding gene procollagen lysine, 2-oxoglutarate 5-dioxygenase 2
Tssr86520 9 92542255 to 92542272 17 + TSS region transcription start site region 86520
Tssr86521 9 92542430 to 92542439 9 + TSS region transcription start site region 86521
Tssr86522 9 92608163 to 92608176 13 + TSS region transcription start site region 86522
Gm2495 9 92612512 to 92612977 465 - pseudogene predicted gene 2495