Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:89675193-93095197

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256 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tmed3 9 89699203 to 89705043 5840 - protein coding gene transmembrane p24 trafficking protein 3
Tssr90838 9 89703175 to 89703220 45 - TSS region transcription start site region 90838
Cpgi22125 9 89704610 to 89705339 729 CpG island CpG island 22125
Tssr90839 9 89704893 to 89704904 11 - TSS region transcription start site region 90839
Tssr90840 9 89704907 to 89705013 106 - TSS region transcription start site region 90840
Tssr90841 9 89705017 to 89705068 51 - TSS region transcription start site region 90841
Ankrd34c 9 89725245 to 89738475 13230 - protein coding gene ankyrin repeat domain 34C
Tssr90842 9 89738414 to 89738463 49 - TSS region transcription start site region 90842
Gm29608 9 89759003 to 89759465 462 + pseudogene predicted gene 29608
Mir184 9 89802260 to 89802328 68 - miRNA gene microRNA 184
Tssr90843 9 89802742 to 89802747 5 - TSS region transcription start site region 90843
1700017I07Rik 9 89802870 to 89806055 3185 + lincRNA gene RIKEN cDNA 1700017I07 gene
4930524O08Rik 9 89826519 to 89864028 37509 + lincRNA gene RIKEN cDNA 4930524O08 gene
Tssr86440 9 89826948 to 89826957 9 + TSS region transcription start site region 86440
Cpgi22126 9 89832065 to 89832265 200 CpG island CpG island 22126
Tssr86441 9 89869824 to 89869843 19 + TSS region transcription start site region 86441
Tssr86442 9 89869851 to 89869873 22 + TSS region transcription start site region 86442
Cpgi22127 9 89879644 to 89879959 315 CpG island CpG island 22127
Cpgi22128 9 89908452 to 89911239 2787 CpG island CpG island 22128
Tssr86443 9 89909534 to 89909606 72 + TSS region transcription start site region 86443
Tssr86444 9 89909891 to 89909924 33 + TSS region transcription start site region 86444
Rasgrf1 9 89909908 to 90026977 117069 + protein coding gene RAS protein-specific guanine nucleotide-releasing factor 1
D9Mit157.1 9 89922783 to 89922915 132 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 157.1
D9Mit240 9 89949718 to 89949838 120 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 240
Cpgi22129 9 89953932 to 89954144 212 CpG island CpG island 22129
Tssr86445 9 89960982 to 89960997 15 + TSS region transcription start site region 86445
Etohcta8 9 89977005 to 89977152 147 QTL ethanol conditioned taste aversion 8
El8 9 89977005 to 89977152 147 QTL epilepsy 8
D9Mit10 9 89977005 to 89977152 147 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 10
D9Dcr24 9 89977007 to 89977123 116 DNA segment DNA segment, Chr 9, Derry C. Roopenian 24
Gm23759 9 90031307 to 90031574 267 + unclassified non-coding RNA gene predicted gene, 23759
Gm17944 9 90033252 to 90033885 633 + pseudogene predicted gene, 17944
Tssr86446 9 90054246 to 90054259 13 + TSS region transcription start site region 86446
Ctsh 9 90054267 to 90076095 21828 + protein coding gene cathepsin H
Tssr86447 9 90054345 to 90054379 34 + TSS region transcription start site region 86447
Tssr86448 9 90054387 to 90054423 36 + TSS region transcription start site region 86448
Cpgi22130 9 90054404 to 90055038 634 CpG island CpG island 22130
Tssr86449 9 90054455 to 90054458 3 + TSS region transcription start site region 86449
Tssr2968 9 90054472 to 90054483 11 + TSS region transcription start site region 2968
Tssr86450 9 90054487 to 90054499 12 + TSS region transcription start site region 86450
Tssr86451 9 90054507 to 90054525 18 + TSS region transcription start site region 86451
Tssr86452 9 90054529 to 90054545 16 + TSS region transcription start site region 86452
Tssr86453 9 90054580 to 90054590 10 + TSS region transcription start site region 86453
Tssr86454 9 90054598 to 90054606 8 + TSS region transcription start site region 86454
Tssr86455 9 90055280 to 90055311 31 + TSS region transcription start site region 86455
Tssr86456 9 90064507 to 90064549 42 + TSS region transcription start site region 86456
Tssr86457 9 90067751 to 90067787 36 + TSS region transcription start site region 86457
Tssr86458 9 90073923 to 90073934 11 + TSS region transcription start site region 86458
Tssr86459 9 90074081 to 90074092 11 + TSS region transcription start site region 86459
Morf4l1 9 90091665 to 90114774 23109 - protein coding gene mortality factor 4 like 1
Gm26882 9 90094178 to 90095902 1724 + lincRNA gene predicted gene, 26882
Tssr90844 9 90096730 to 90096734 4 - TSS region transcription start site region 90844
Tssr90845 9 90107032 to 90107035 3 - TSS region transcription start site region 90845
Cpgi22131 9 90113688 to 90115229 1541 CpG island CpG island 22131
Tssr86460 9 90113935 to 90113965 30 + TSS region transcription start site region 86460
Tssr90846 9 90114358 to 90114383 25 - TSS region transcription start site region 90846
Tssr90847 9 90114677 to 90114786 109 - TSS region transcription start site region 90847
Tssr90848 9 90114788 to 90114797 9 - TSS region transcription start site region 90848
Tssr90849 9 90114812 to 90114821 9 - TSS region transcription start site region 90849
Gm6223 9 90118937 to 90119807 870 + pseudogene predicted gene 6223
n-TKctt18 9 90126509 to 90126581 72 - tRNA gene nuclear encoded tRNA lysine 18 (anticodon CTT)
9430062P05Rik 9 90156460 to 90159804 3344 - unclassified gene RIKEN cDNA 9430062P05 gene
Cpgi22132 9 90162751 to 90164139 1388 CpG island CpG island 22132
Adamts7 9 90162978 to 90200102 37124 + protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7
Tssr86461 9 90163008 to 90163037 29 + TSS region transcription start site region 86461
Tssr86462 9 90163057 to 90163101 44 + TSS region transcription start site region 86462
Tssr86463 9 90163102 to 90163120 18 + TSS region transcription start site region 86463
Tssr86464 9 90163166 to 90163173 7 + TSS region transcription start site region 86464
Tssr86465 9 90164882 to 90164886 4 + TSS region transcription start site region 86465
Cpgi22133 9 90171431 to 90171672 241 CpG island CpG island 22133
Tssr86466 9 90198688 to 90198722 34 + TSS region transcription start site region 86466
Tbc1d2b 9 90202047 to 90270769 68722 - protein coding gene TBC1 domain family, member 2B
Tssr90850 9 90202685 to 90202733 48 - TSS region transcription start site region 90850
Gm16200 9 90221295 to 90221625 330 - pseudogene predicted gene 16200
Tssr90851 9 90237616 to 90237617 1 - TSS region transcription start site region 90851
Tssr90852 9 90237999 to 90238022 23 - TSS region transcription start site region 90852
Tssr2969 9 90242996 to 90243001 5 - TSS region transcription start site region 2969
Tssr90853 9 90243019 to 90243033 14 - TSS region transcription start site region 90853
Tssr90854 9 90243113 to 90243120 7 - TSS region transcription start site region 90854
Tssr90855 9 90243121 to 90243133 12 - TSS region transcription start site region 90855
Tssr2970 9 90243139 to 90243147 8 - TSS region transcription start site region 2970
Tssr86467 9 90243301 to 90243312 11 + TSS region transcription start site region 86467
Tssr2971 9 90245301 to 90245350 49 - TSS region transcription start site region 2971
Tssr86468 9 90245426 to 90245435 9 + TSS region transcription start site region 86468
Tssr86469 9 90245441 to 90245453 12 + TSS region transcription start site region 86469
Tssr86470 9 90245465 to 90245475 10 + TSS region transcription start site region 86470
Tssr86471 9 90245487 to 90245502 15 + TSS region transcription start site region 86471
Tssr90856 9 90250529 to 90250563 34 - TSS region transcription start site region 90856
Tssr90857 9 90255932 to 90255943 11 - TSS region transcription start site region 90857
Cpgi22134 9 90270067 to 90270978 911 CpG island CpG island 22134
Tssr90858 9 90270712 to 90270799 87 - TSS region transcription start site region 90858
Gm30849 9 90315448 to 90317639 2191 + lincRNA gene predicted gene, 30849
Tssr86472 9 90315909 to 90315925 16 + TSS region transcription start site region 86472
Gm22717 9 90315910 to 90316080 170 + snRNA gene predicted gene, 22717
Tssr86473 9 90351992 to 90351998 6 + TSS region transcription start site region 86473
Gm22866 9 90351995 to 90352171 176 + snRNA gene predicted gene, 22866
Gm39398 9 90458976 to 90482876 23900 + lncRNA gene predicted gene, 39398
Gm30905 9 90687386 to 90704932 17546 - lncRNA gene predicted gene, 30905
Gm2497 9 90732924 to 90733524 600 - pseudogene predicted gene 2497
Gm29605 9 90734145 to 90734436 291 - pseudogene predicted gene 29605
Gm29604 9 90747380 to 90747542 162 - pseudogene predicted gene 29604
D9Mit308 9 90761793 to 90761915 122 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 308
D9Dcr25 9 90761796 to 90761902 106 DNA segment DNA segment, Chr 9, Derry C. Roopenian 25
Gm28703 9 90825302 to 90828860 3558 - lincRNA gene predicted gene 28703
Tssr90859 9 90828847 to 90828861 14 - TSS region transcription start site region 90859
Gm37665 9 90863159 to 90863307 148 + unclassified gene predicted gene, 37665
Gm31114 9 90907005 to 90933945 26940 - lncRNA gene predicted gene, 31114
Gm20561 9 90907906 to 90908197 291 - pseudogene predicted gene, 20561
Gm29408 9 90938980 to 90939195 215 + lincRNA gene predicted gene 29408
Tssr90860 9 91051104 to 91051106 2 - TSS region transcription start site region 90860
Tssr90861 9 91085825 to 91085865 40 - TSS region transcription start site region 90861
Tssr86474 9 91097042 to 91097043 1 + TSS region transcription start site region 86474
Gm5620 9 91097149 to 91098496 1347 + pseudogene predicted gene 5620
Tssr90862 9 91102174 to 91102184 10 - TSS region transcription start site region 90862
Gm36960 9 91128484 to 91130518 2034 - unclassified gene predicted gene, 36960
Tssr90863 9 91130388 to 91130399 11 - TSS region transcription start site region 90863
Tssr90864 9 91130477 to 91130488 11 - TSS region transcription start site region 90864
Gm29602 9 91216015 to 91216456 441 + pseudogene predicted gene 29602
Gm37812 9 91270930 to 91273404 2474 - unclassified gene predicted gene, 37812
D9Mit198 9 91281970 to 91282118 148 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 198
Gm18378 9 91290996 to 91291617 621 + pseudogene predicted gene, 18378
Gm40546 9 91316202 to 91354063 37861 - lncRNA gene predicted gene, 40546
Gm37457 9 91325416 to 91327848 2432 - unclassified gene predicted gene, 37457
Gm37040 9 91335244 to 91337067 1823 - unclassified gene predicted gene, 37040
Gm28652 9 91337601 to 91340878 3277 + lincRNA gene predicted gene 28652
A730094K22Rik 9 91350214 to 91350953 739 - lncRNA gene RIKEN cDNA A730094K22 gene
Cpgi22135 9 91350815 to 91351047 232 CpG island CpG island 22135
Tssr90865 9 91350911 to 91350965 54 - TSS region transcription start site region 90865
Gm40545 9 91351166 to 91352489 1323 + lncRNA gene predicted gene, 40545
Cpgi22136 9 91353581 to 91354098 517 CpG island CpG island 22136
Cpgi22137 9 91355641 to 91355866 225 CpG island CpG island 22137
Zic1 9 91358058 to 91365810 7752 - protein coding gene zinc finger protein of the cerebellum 1
Tssr90866 9 91360998 to 91361015 17 - TSS region transcription start site region 90866
Tssr90867 9 91361065 to 91361076 11 - TSS region transcription start site region 90867
Cpgi22138 9 91361458 to 91362646 1188 CpG island CpG island 22138
Tssr90868 9 91361619 to 91361633 14 - TSS region transcription start site region 90868
Tssr90869 9 91361698 to 91361718 20 - TSS region transcription start site region 90869
Tssr90870 9 91361735 to 91361746 11 - TSS region transcription start site region 90870
Tssr86475 9 91362095 to 91362116 21 + TSS region transcription start site region 86475
Tssr90871 9 91362613 to 91362622 9 - TSS region transcription start site region 90871
Cpgi22139 9 91363952 to 91366119 2167 CpG island CpG island 22139
Tssr90872 9 91364873 to 91364887 14 - TSS region transcription start site region 90872
Tssr90873 9 91364944 to 91364957 13 - TSS region transcription start site region 90873
Tssr90874 9 91364979 to 91365013 34 - TSS region transcription start site region 90874
Tssr90875 9 91365143 to 91365153 10 - TSS region transcription start site region 90875
Tssr90876 9 91365345 to 91365362 17 - TSS region transcription start site region 90876
Tssr90877 9 91365410 to 91365421 11 - TSS region transcription start site region 90877
Tssr90878 9 91365756 to 91365774 18 - TSS region transcription start site region 90878
Tssr90879 9 91365778 to 91365815 37 - TSS region transcription start site region 90879
Zic4 9 91365825 to 91389351 23526 + protein coding gene zinc finger protein of the cerebellum 4
Tssr86476 9 91365959 to 91365969 10 + TSS region transcription start site region 86476
Tssr90880 9 91368152 to 91368173 21 - TSS region transcription start site region 90880
D9Mit110 9 91368177 to 91368325 148 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 110
Lifespan1 9 91368177 to 91368325 148 QTL life span 1
Tssr86477 9 91368335 to 91368382 47 + TSS region transcription start site region 86477
Tssr86478 9 91368811 to 91368828 17 + TSS region transcription start site region 86478
Tssr86479 9 91369041 to 91369073 32 + TSS region transcription start site region 86479
Tssr86480 9 91371423 to 91371444 21 + TSS region transcription start site region 86480
Tssr86481 9 91377960 to 91377985 25 + TSS region transcription start site region 86481
Tssr86482 9 91378348 to 91378373 25 + TSS region transcription start site region 86482
Cpgi22140 9 91378453 to 91379325 872 CpG island CpG island 22140
Tssr86483 9 91378574 to 91378582 8 + TSS region transcription start site region 86483
Tssr86484 9 91378614 to 91378623 9 + TSS region transcription start site region 86484
Tssr86485 9 91378636 to 91378646 10 + TSS region transcription start site region 86485
Gm37477 9 91380519 to 91381402 883 - unclassified gene predicted gene, 37477
Tssr86486 9 91380689 to 91380706 17 + TSS region transcription start site region 86486
Cpgi22141 9 91381277 to 91382134 857 CpG island CpG island 22141
Tssr90881 9 91381421 to 91381432 11 - TSS region transcription start site region 90881
Cpgi22142 9 91383756 to 91384528 772 CpG island CpG island 22142
Tssr90882 9 91385193 to 91385197 4 - TSS region transcription start site region 90882
Cpgi22143 9 91387023 to 91387270 247 CpG island CpG island 22143
Tssr86487 9 91403465 to 91403474 9 + TSS region transcription start site region 86487
Gm29478 9 91404474 to 91562818 158344 + lincRNA gene predicted gene 29478
Tssr86488 9 91404500 to 91404531 31 + TSS region transcription start site region 86488
Cpgi22144 9 91405829 to 91406231 402 CpG island CpG island 22144
Tssr86489 9 91437849 to 91437854 5 + TSS region transcription start site region 86489
Gm39400 9 91707711 to 91772768 65057 + lncRNA gene predicted gene, 39400
Gm37987 9 91757322 to 91758146 824 - unclassified gene predicted gene, 37987
Gm26101 9 91839770 to 91839874 104 + snRNA gene predicted gene, 26101
Gm31409 9 91922664 to 91961118 38454 - lincRNA gene predicted gene, 31409
Tssr90883 9 91961128 to 91961141 13 - TSS region transcription start site region 90883
Tssr90884 9 91961169 to 91961179 10 - TSS region transcription start site region 90884
Gm46147 9 92143362 to 92175188 31826 - lncRNA gene predicted gene, 46147
Gm31588 9 92186967 to 92228744 41777 - lncRNA gene predicted gene, 31588
Plscr5 9 92192936 to 92209772 16836 + protein coding gene phospholipid scramblase family, member 5
Tssr86490 9 92193088 to 92193100 12 + TSS region transcription start site region 86490
Tssr86491 9 92193101 to 92193118 17 + TSS region transcription start site region 86491
Tssr86492 9 92193152 to 92193157 5 + TSS region transcription start site region 86492
Gm31531 9 92201834 to 92207771 5937 - lncRNA gene predicted gene, 31531
Tssr86493 9 92222286 to 92222287 1 + TSS region transcription start site region 86493
Tssr90885 9 92227242 to 92227265 23 - TSS region transcription start site region 90885
Tssr90886 9 92227269 to 92227285 16 - TSS region transcription start site region 90886
Tssr86494 9 92249656 to 92249667 11 + TSS region transcription start site region 86494
Tssr86495 9 92249678 to 92249689 11 + TSS region transcription start site region 86495
Tssr86496 9 92249715 to 92249729 14 + TSS region transcription start site region 86496
Tssr86497 9 92249749 to 92249753 4 + TSS region transcription start site region 86497
Tssr86498 9 92250026 to 92250034 8 + TSS region transcription start site region 86498
Tssr86499 9 92250039 to 92250060 21 + TSS region transcription start site region 86499
Tssr86500 9 92250061 to 92250068 7 + TSS region transcription start site region 86500
Tssr86501 9 92250083 to 92250098 15 + TSS region transcription start site region 86501