Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:89343175-90063220

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56 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm40543 9 89356803 to 89365930 9127 + lncRNA gene predicted gene, 40543
Tssr86437 9 89428465 to 89428469 4 + TSS region transcription start site region 86437
Tssr86438 9 89450038 to 89450041 3 + TSS region transcription start site region 86438
Gm47403 9 89550698 to 89560384 9686 - lincRNA gene predicted gene, 47403
Tssr86439 9 89551478 to 89551483 5 + TSS region transcription start site region 86439
Minar1 9 89587216 to 89623125 35909 - protein coding gene membrane integral NOTCH2 associated receptor 1
Cpgi22123 9 89601494 to 89601904 410 CpG island CpG island 22123
Cpgi22124 9 89622075 to 89623391 1316 CpG island CpG island 22124
Gm47409 9 89638072 to 89646002 7930 + lincRNA gene predicted gene, 47409
Gm47410 9 89667273 to 89668471 1198 - pseudogene predicted gene, 47410
Tmed3 9 89699203 to 89705043 5840 - protein coding gene transmembrane p24 trafficking protein 3
Tssr90838 9 89703175 to 89703220 45 - TSS region transcription start site region 90838
Cpgi22125 9 89704610 to 89705339 729 CpG island CpG island 22125
Tssr90839 9 89704893 to 89704904 11 - TSS region transcription start site region 90839
Tssr90840 9 89704907 to 89705013 106 - TSS region transcription start site region 90840
Tssr90841 9 89705017 to 89705068 51 - TSS region transcription start site region 90841
Ankrd34c 9 89725245 to 89738475 13230 - protein coding gene ankyrin repeat domain 34C
Tssr90842 9 89738414 to 89738463 49 - TSS region transcription start site region 90842
Gm29608 9 89759003 to 89759465 462 + pseudogene predicted gene 29608
Mir184 9 89802260 to 89802328 68 - miRNA gene microRNA 184
Tssr90843 9 89802742 to 89802747 5 - TSS region transcription start site region 90843
1700017I07Rik 9 89802870 to 89806055 3185 + lincRNA gene RIKEN cDNA 1700017I07 gene
4930524O08Rik 9 89826519 to 89864028 37509 + lincRNA gene RIKEN cDNA 4930524O08 gene
Tssr86440 9 89826948 to 89826957 9 + TSS region transcription start site region 86440
Cpgi22126 9 89832065 to 89832265 200 CpG island CpG island 22126
Tssr86441 9 89869824 to 89869843 19 + TSS region transcription start site region 86441
Tssr86442 9 89869851 to 89869873 22 + TSS region transcription start site region 86442
Cpgi22127 9 89879644 to 89879959 315 CpG island CpG island 22127
Cpgi22128 9 89908452 to 89911239 2787 CpG island CpG island 22128
Tssr86443 9 89909534 to 89909606 72 + TSS region transcription start site region 86443
Tssr86444 9 89909891 to 89909924 33 + TSS region transcription start site region 86444
Rasgrf1 9 89909908 to 90026977 117069 + protein coding gene RAS protein-specific guanine nucleotide-releasing factor 1
D9Mit157.1 9 89922783 to 89922915 132 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 157.1
D9Mit240 9 89949718 to 89949838 120 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 240
Cpgi22129 9 89953932 to 89954144 212 CpG island CpG island 22129
Tssr86445 9 89960982 to 89960997 15 + TSS region transcription start site region 86445
D9Mit10 9 89977005 to 89977152 147 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 10
Etohcta8 9 89977005 to 89977152 147 QTL ethanol conditioned taste aversion 8
El8 9 89977005 to 89977152 147 QTL epilepsy 8
D9Dcr24 9 89977007 to 89977123 116 DNA segment DNA segment, Chr 9, Derry C. Roopenian 24
Gm23759 9 90031307 to 90031574 267 + unclassified non-coding RNA gene predicted gene, 23759
Gm17944 9 90033252 to 90033885 633 + pseudogene predicted gene, 17944
Tssr86446 9 90054246 to 90054259 13 + TSS region transcription start site region 86446
Ctsh 9 90054267 to 90076095 21828 + protein coding gene cathepsin H
Tssr86447 9 90054345 to 90054379 34 + TSS region transcription start site region 86447
Tssr86448 9 90054387 to 90054423 36 + TSS region transcription start site region 86448
Cpgi22130 9 90054404 to 90055038 634 CpG island CpG island 22130
Tssr86449 9 90054455 to 90054458 3 + TSS region transcription start site region 86449
Tssr2968 9 90054472 to 90054483 11 + TSS region transcription start site region 2968
Tssr86450 9 90054487 to 90054499 12 + TSS region transcription start site region 86450
Tssr86451 9 90054507 to 90054525 18 + TSS region transcription start site region 86451
Tssr86452 9 90054529 to 90054545 16 + TSS region transcription start site region 86452
Tssr86453 9 90054580 to 90054590 10 + TSS region transcription start site region 86453
Tssr86454 9 90054598 to 90054606 8 + TSS region transcription start site region 86454
Tssr86455 9 90055280 to 90055311 31 + TSS region transcription start site region 86455
Pymr 9 118938021 to 89977005 -28961016 QTL Plasmodium yoelli malaria resistance