Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:88512047-89622051

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Snhg5 9 88521052 to 88522897 1845 - lncRNA gene small nucleolar RNA host gene 5
Snord50a 9 88521529 to 88521600 71 - snoRNA gene small nucleolar RNA, C/D box 50A
Snord50b 9 88521797 to 88521868 71 - snoRNA gene small nucleolar RNA, C/D box 50B
Cpgi22117 9 88522626 to 88523702 1076 CpG island CpG island 22117
Tssr90830 9 88522876 to 88522895 19 - TSS region transcription start site region 90830
Tssr2964 9 88523047 to 88523096 49 + TSS region transcription start site region 2964
Gm22985 9 88526679 to 88526794 115 - snRNA gene predicted gene, 22985
Tssr90831 9 88526786 to 88526797 11 - TSS region transcription start site region 90831
Tssr86412 9 88532922 to 88532928 6 + TSS region transcription start site region 86412
Tssr2965 9 88542417 to 88542418 1 + TSS region transcription start site region 2965
Tssr86413 9 88548013 to 88548123 110 + TSS region transcription start site region 86413
Zfp949 9 88548020 to 88571061 23041 + protein coding gene zinc finger protein 949
Cpgi22118 9 88548043 to 88548550 507 CpG island CpG island 22118
Tssr86414 9 88549862 to 88549864 2 + TSS region transcription start site region 86414
Tssr86415 9 88553227 to 88553235 8 + TSS region transcription start site region 86415
Gm26461 9 88553236 to 88553525 289 + unclassified non-coding RNA gene predicted gene, 26461
Trim43a 9 88581036 to 88588823 7787 + protein coding gene tripartite motif-containing 43A
9430037G07Rik 9 88595325 to 88599243 3918 - lincRNA gene RIKEN cDNA 9430037G07 gene
Gm29603 9 88597410 to 88597743 333 + pseudogene predicted gene 29603
Gm23017 9 88598348 to 88598419 71 - snoRNA gene predicted gene, 23017
Cpgi22119 9 88599265 to 88599681 416 CpG island CpG island 22119
Gm26567 9 88599469 to 88611855 12386 + lncRNA gene predicted gene, 26567
Gm29881 9 88611939 to 88638208 26269 + lncRNA gene predicted gene, 29881
Gm29415 9 88612345 to 88623323 10978 - lncRNA gene predicted gene 29415
Gm40540 9 88676159 to 88678440 2281 - lncRNA gene predicted gene, 40540
Gm38214 9 88680939 to 88681926 987 - unclassified gene predicted gene, 38214
Gm37226 9 88682932 to 88686186 3254 - unclassified gene predicted gene, 37226
Mthfsl 9 88688602 to 88720296 31694 - protein coding gene 5, 10-methenyltetrahydrofolate synthetase-like
Tssr90832 9 88719321 to 88719327 6 - TSS region transcription start site region 90832
Bcl2a1d 9 88723288 to 88731850 8562 - protein coding gene B cell leukemia/lymphoma 2 related protein A1d
Tssr90833 9 88731718 to 88731759 41 - TSS region transcription start site region 90833
Tssr86416 9 88731992 to 88732001 9 + TSS region transcription start site region 86416
Gm37560 9 88731998 to 88732997 999 + unclassified gene predicted gene, 37560
Tssr86417 9 88735677 to 88735688 11 + TSS region transcription start site region 86417
Gm10634 9 88745262 to 88830918 85656 + antisense lncRNA gene predicted gene 10634
Gm40539 9 88746784 to 88748129 1345 - lncRNA gene predicted gene, 40539
Tssr2966 9 88748056 to 88748060 4 + TSS region transcription start site region 2966
Gm26082 9 88770355 to 88770481 126 - snoRNA gene predicted gene, 26082
Gm37614 9 88826604 to 88826813 209 - unclassified gene predicted gene, 37614
Gm29562 9 88827522 to 88828425 903 + lincRNA gene predicted gene 29562
Trim43c 9 88839164 to 88848190 9026 + protein coding gene tripartite motif-containing 43C
9330159M07Rik 9 88841798 to 88858870 17072 - lncRNA gene RIKEN cDNA 9330159M07 gene
Tssr90834 9 88845616 to 88845629 13 - TSS region transcription start site region 90834
Gm9775 9 88856756 to 88857086 330 + pseudogene predicted gene 9775
Gm26135 9 88857693 to 88857764 71 - snoRNA gene predicted gene, 26135
Cpgi22120 9 88858790 to 88859150 360 CpG island CpG island 22120
Gm26611 9 88859011 to 88883554 24543 + lincRNA gene predicted gene, 26611
Gm2396 9 88878994 to 88937342 58348 - unclassified non-coding RNA gene predicted gene 2396
Gm23707 9 88917832 to 88917956 124 + snoRNA gene predicted gene, 23707
Bcl2a1a 9 88956920 to 88962416 5496 + protein coding gene B cell leukemia/lymphoma 2 related protein A1a
Tssr86418 9 88956979 to 88957003 24 + TSS region transcription start site region 86418
Tssr86419 9 88957011 to 88957022 11 + TSS region transcription start site region 86419
Tssr86420 9 88957024 to 88957036 12 + TSS region transcription start site region 86420
Tssr90835 9 88959103 to 88959110 7 - TSS region transcription start site region 90835
Gm37833 9 88980921 to 88984176 3255 + unclassified gene predicted gene, 37833
Gm37993 9 88985191 to 88986178 987 + unclassified gene predicted gene, 37993
Cpgi22121 9 89066637 to 89066810 173 CpG island CpG island 22121
Tssr86421 9 89066970 to 89066976 6 + TSS region transcription start site region 86421
Tssr86422 9 89067047 to 89067051 4 + TSS region transcription start site region 86422
Gm24463 9 89075336 to 89075407 71 + snoRNA gene predicted gene, 24463
Gm19498 9 89076012 to 89076342 330 - pseudogene predicted gene, 19498
Trim43b 9 89084624 to 89092835 8211 - protein coding gene tripartite motif-containing 43B
Gm40542 9 89087641 to 89088408 767 + lncRNA gene predicted gene, 40542
Tssr90836 9 89092682 to 89092691 9 - TSS region transcription start site region 90836
4930579C12Rik 9 89113111 to 89177887 64776 - lincRNA gene RIKEN cDNA 4930579C12 gene
Gm26423 9 89158999 to 89159126 127 + snoRNA gene predicted gene, 26423
Tssr90837 9 89177883 to 89177888 5 - TSS region transcription start site region 90837
Gm40544 9 89178012 to 89179160 1148 + lncRNA gene predicted gene, 40544
Bcl2a1b 9 89199273 to 89207838 8565 + protein coding gene B cell leukemia/lymphoma 2 related protein A1b
Tssr86423 9 89199297 to 89199310 13 + TSS region transcription start site region 86423
Tssr86424 9 89199319 to 89199332 13 + TSS region transcription start site region 86424
Tssr2967 9 89199354 to 89199357 3 + TSS region transcription start site region 2967
Gm29094 9 89199379 to 89215471 16092 + protein coding gene predicted gene 29094
Tssr86425 9 89211162 to 89211196 34 + TSS region transcription start site region 86425
Mthfs 9 89211190 to 89240225 29035 + protein coding gene 5, 10-methenyltetrahydrofolate synthetase
Tssr86426 9 89211206 to 89211226 20 + TSS region transcription start site region 86426
Tssr86427 9 89211233 to 89211253 20 + TSS region transcription start site region 86427
Tssr86428 9 89211283 to 89211297 14 + TSS region transcription start site region 86428
Cpgi22122 9 89211294 to 89211539 245 CpG island CpG island 22122
Tssr86429 9 89211412 to 89211444 32 + TSS region transcription start site region 86429
Tssr86430 9 89211633 to 89211640 7 + TSS region transcription start site region 86430
Tssr86431 9 89218448 to 89218459 11 + TSS region transcription start site region 86431
Tssr86432 9 89248508 to 89248527 19 + TSS region transcription start site region 86432
Tssr86433 9 89248537 to 89248548 11 + TSS region transcription start site region 86433
Tssr86434 9 89248550 to 89248564 14 + TSS region transcription start site region 86434
Gm38091 9 89259525 to 89263395 3870 - unclassified gene predicted gene, 38091
D9Mit290 9 89286256 to 89286372 116 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 290
Tssr86435 9 89317120 to 89317126 6 + TSS region transcription start site region 86435
Tssr86436 9 89335374 to 89335380 6 + TSS region transcription start site region 86436
Gm40543 9 89356803 to 89365930 9127 + lncRNA gene predicted gene, 40543
Tssr86437 9 89428465 to 89428469 4 + TSS region transcription start site region 86437
Tssr86438 9 89450038 to 89450041 3 + TSS region transcription start site region 86438
Gm47403 9 89550698 to 89560384 9686 - lincRNA gene predicted gene, 47403
Tssr86439 9 89551478 to 89551483 5 + TSS region transcription start site region 86439
Minar1 9 89587216 to 89623125 35909 - protein coding gene membrane integral NOTCH2 associated receptor 1
Cpgi22123 9 89601494 to 89601904 410 CpG island CpG island 22123