Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:88504455-91604458

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276 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Snhg5 9 88521052 to 88522897 1845 - lncRNA gene small nucleolar RNA host gene 5
Snord50a 9 88521529 to 88521600 71 - snoRNA gene small nucleolar RNA, C/D box 50A
Snord50b 9 88521797 to 88521868 71 - snoRNA gene small nucleolar RNA, C/D box 50B
Cpgi22117 9 88522626 to 88523702 1076 CpG island CpG island 22117
Tssr90830 9 88522876 to 88522895 19 - TSS region transcription start site region 90830
Tssr2964 9 88523047 to 88523096 49 + TSS region transcription start site region 2964
Gm22985 9 88526679 to 88526794 115 - snRNA gene predicted gene, 22985
Tssr90831 9 88526786 to 88526797 11 - TSS region transcription start site region 90831
Tssr86412 9 88532922 to 88532928 6 + TSS region transcription start site region 86412
Tssr2965 9 88542417 to 88542418 1 + TSS region transcription start site region 2965
Tssr86413 9 88548013 to 88548123 110 + TSS region transcription start site region 86413
Zfp949 9 88548020 to 88571061 23041 + protein coding gene zinc finger protein 949
Cpgi22118 9 88548043 to 88548550 507 CpG island CpG island 22118
Tssr86414 9 88549862 to 88549864 2 + TSS region transcription start site region 86414
Tssr86415 9 88553227 to 88553235 8 + TSS region transcription start site region 86415
Gm26461 9 88553236 to 88553525 289 + unclassified non-coding RNA gene predicted gene, 26461
Trim43a 9 88581036 to 88588823 7787 + protein coding gene tripartite motif-containing 43A
9430037G07Rik 9 88595325 to 88599243 3918 - lincRNA gene RIKEN cDNA 9430037G07 gene
Gm29603 9 88597410 to 88597743 333 + pseudogene predicted gene 29603
Gm23017 9 88598348 to 88598419 71 - snoRNA gene predicted gene, 23017
Cpgi22119 9 88599265 to 88599681 416 CpG island CpG island 22119
Gm26567 9 88599469 to 88611855 12386 + lncRNA gene predicted gene, 26567
Gm29881 9 88611939 to 88638208 26269 + lncRNA gene predicted gene, 29881
Gm29415 9 88612345 to 88623323 10978 - lncRNA gene predicted gene 29415
Gm40540 9 88676159 to 88678440 2281 - lncRNA gene predicted gene, 40540
Gm38214 9 88680939 to 88681926 987 - unclassified gene predicted gene, 38214
Gm37226 9 88682932 to 88686186 3254 - unclassified gene predicted gene, 37226
Mthfsl 9 88688602 to 88720296 31694 - protein coding gene 5, 10-methenyltetrahydrofolate synthetase-like
Tssr90832 9 88719321 to 88719327 6 - TSS region transcription start site region 90832
Bcl2a1d 9 88723288 to 88731850 8562 - protein coding gene B cell leukemia/lymphoma 2 related protein A1d
Tssr90833 9 88731718 to 88731759 41 - TSS region transcription start site region 90833
Tssr86416 9 88731992 to 88732001 9 + TSS region transcription start site region 86416
Gm37560 9 88731998 to 88732997 999 + unclassified gene predicted gene, 37560
Tssr86417 9 88735677 to 88735688 11 + TSS region transcription start site region 86417
Gm10634 9 88745262 to 88830918 85656 + antisense lncRNA gene predicted gene 10634
Gm40539 9 88746784 to 88748129 1345 - lncRNA gene predicted gene, 40539
Tssr2966 9 88748056 to 88748060 4 + TSS region transcription start site region 2966
Gm26082 9 88770355 to 88770481 126 - snoRNA gene predicted gene, 26082
Gm37614 9 88826604 to 88826813 209 - unclassified gene predicted gene, 37614
Gm29562 9 88827522 to 88828425 903 + lincRNA gene predicted gene 29562
Trim43c 9 88839164 to 88848190 9026 + protein coding gene tripartite motif-containing 43C
9330159M07Rik 9 88841798 to 88858870 17072 - lncRNA gene RIKEN cDNA 9330159M07 gene
Tssr90834 9 88845616 to 88845629 13 - TSS region transcription start site region 90834
Gm9775 9 88856756 to 88857086 330 + pseudogene predicted gene 9775
Gm26135 9 88857693 to 88857764 71 - snoRNA gene predicted gene, 26135
Cpgi22120 9 88858790 to 88859150 360 CpG island CpG island 22120
Gm26611 9 88859011 to 88883554 24543 + lincRNA gene predicted gene, 26611
Gm2396 9 88878994 to 88937342 58348 - unclassified non-coding RNA gene predicted gene 2396
Gm23707 9 88917832 to 88917956 124 + snoRNA gene predicted gene, 23707
Bcl2a1a 9 88956920 to 88962416 5496 + protein coding gene B cell leukemia/lymphoma 2 related protein A1a
Tssr86418 9 88956979 to 88957003 24 + TSS region transcription start site region 86418
Tssr86419 9 88957011 to 88957022 11 + TSS region transcription start site region 86419
Tssr86420 9 88957024 to 88957036 12 + TSS region transcription start site region 86420
Tssr90835 9 88959103 to 88959110 7 - TSS region transcription start site region 90835
Gm37833 9 88980921 to 88984176 3255 + unclassified gene predicted gene, 37833
Gm37993 9 88985191 to 88986178 987 + unclassified gene predicted gene, 37993
Cpgi22121 9 89066637 to 89066810 173 CpG island CpG island 22121
Tssr86421 9 89066970 to 89066976 6 + TSS region transcription start site region 86421
Tssr86422 9 89067047 to 89067051 4 + TSS region transcription start site region 86422
Gm24463 9 89075336 to 89075407 71 + snoRNA gene predicted gene, 24463
Gm19498 9 89076012 to 89076342 330 - pseudogene predicted gene, 19498
Trim43b 9 89084624 to 89092835 8211 - protein coding gene tripartite motif-containing 43B
Gm40542 9 89087641 to 89088408 767 + lncRNA gene predicted gene, 40542
Tssr90836 9 89092682 to 89092691 9 - TSS region transcription start site region 90836
4930579C12Rik 9 89113111 to 89177887 64776 - lincRNA gene RIKEN cDNA 4930579C12 gene
Gm26423 9 89158999 to 89159126 127 + snoRNA gene predicted gene, 26423
Tssr90837 9 89177883 to 89177888 5 - TSS region transcription start site region 90837
Gm40544 9 89178012 to 89179160 1148 + lncRNA gene predicted gene, 40544
Bcl2a1b 9 89199273 to 89207838 8565 + protein coding gene B cell leukemia/lymphoma 2 related protein A1b
Tssr86423 9 89199297 to 89199310 13 + TSS region transcription start site region 86423
Tssr86424 9 89199319 to 89199332 13 + TSS region transcription start site region 86424
Tssr2967 9 89199354 to 89199357 3 + TSS region transcription start site region 2967
Gm29094 9 89199379 to 89215471 16092 + protein coding gene predicted gene 29094
Tssr86425 9 89211162 to 89211196 34 + TSS region transcription start site region 86425
Mthfs 9 89211190 to 89240225 29035 + protein coding gene 5, 10-methenyltetrahydrofolate synthetase
Tssr86426 9 89211206 to 89211226 20 + TSS region transcription start site region 86426
Tssr86427 9 89211233 to 89211253 20 + TSS region transcription start site region 86427
Tssr86428 9 89211283 to 89211297 14 + TSS region transcription start site region 86428
Cpgi22122 9 89211294 to 89211539 245 CpG island CpG island 22122
Tssr86429 9 89211412 to 89211444 32 + TSS region transcription start site region 86429
Tssr86430 9 89211633 to 89211640 7 + TSS region transcription start site region 86430
Tssr86431 9 89218448 to 89218459 11 + TSS region transcription start site region 86431
Tssr86432 9 89248508 to 89248527 19 + TSS region transcription start site region 86432
Tssr86433 9 89248537 to 89248548 11 + TSS region transcription start site region 86433
Tssr86434 9 89248550 to 89248564 14 + TSS region transcription start site region 86434
Gm38091 9 89259525 to 89263395 3870 - unclassified gene predicted gene, 38091
D9Mit290 9 89286256 to 89286372 116 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 290
Tssr86435 9 89317120 to 89317126 6 + TSS region transcription start site region 86435
Tssr86436 9 89335374 to 89335380 6 + TSS region transcription start site region 86436
Gm40543 9 89356803 to 89365930 9127 + lncRNA gene predicted gene, 40543
Tssr86437 9 89428465 to 89428469 4 + TSS region transcription start site region 86437
Tssr86438 9 89450038 to 89450041 3 + TSS region transcription start site region 86438
Gm47403 9 89550698 to 89560384 9686 - lincRNA gene predicted gene, 47403
Tssr86439 9 89551478 to 89551483 5 + TSS region transcription start site region 86439
Minar1 9 89587216 to 89623125 35909 - protein coding gene membrane integral NOTCH2 associated receptor 1
Cpgi22123 9 89601494 to 89601904 410 CpG island CpG island 22123
Cpgi22124 9 89622075 to 89623391 1316 CpG island CpG island 22124
Gm47409 9 89638072 to 89646002 7930 + lincRNA gene predicted gene, 47409
Gm47410 9 89667273 to 89668471 1198 - pseudogene predicted gene, 47410
Tmed3 9 89699203 to 89705043 5840 - protein coding gene transmembrane p24 trafficking protein 3
Tssr90838 9 89703175 to 89703220 45 - TSS region transcription start site region 90838
Cpgi22125 9 89704610 to 89705339 729 CpG island CpG island 22125
Tssr90839 9 89704893 to 89704904 11 - TSS region transcription start site region 90839
Tssr90840 9 89704907 to 89705013 106 - TSS region transcription start site region 90840
Tssr90841 9 89705017 to 89705068 51 - TSS region transcription start site region 90841
Ankrd34c 9 89725245 to 89738475 13230 - protein coding gene ankyrin repeat domain 34C
Tssr90842 9 89738414 to 89738463 49 - TSS region transcription start site region 90842
Gm29608 9 89759003 to 89759465 462 + pseudogene predicted gene 29608
Mir184 9 89802260 to 89802328 68 - miRNA gene microRNA 184
Tssr90843 9 89802742 to 89802747 5 - TSS region transcription start site region 90843
1700017I07Rik 9 89802870 to 89806055 3185 + lincRNA gene RIKEN cDNA 1700017I07 gene
4930524O08Rik 9 89826519 to 89864028 37509 + lincRNA gene RIKEN cDNA 4930524O08 gene
Tssr86440 9 89826948 to 89826957 9 + TSS region transcription start site region 86440
Cpgi22126 9 89832065 to 89832265 200 CpG island CpG island 22126
Tssr86441 9 89869824 to 89869843 19 + TSS region transcription start site region 86441
Tssr86442 9 89869851 to 89869873 22 + TSS region transcription start site region 86442
Cpgi22127 9 89879644 to 89879959 315 CpG island CpG island 22127
Cpgi22128 9 89908452 to 89911239 2787 CpG island CpG island 22128
Tssr86443 9 89909534 to 89909606 72 + TSS region transcription start site region 86443
Tssr86444 9 89909891 to 89909924 33 + TSS region transcription start site region 86444
Rasgrf1 9 89909908 to 90026977 117069 + protein coding gene RAS protein-specific guanine nucleotide-releasing factor 1
D9Mit157.1 9 89922783 to 89922915 132 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 157.1
D9Mit240 9 89949718 to 89949838 120 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 240
Cpgi22129 9 89953932 to 89954144 212 CpG island CpG island 22129
Tssr86445 9 89960982 to 89960997 15 + TSS region transcription start site region 86445
El8 9 89977005 to 89977152 147 QTL epilepsy 8
Etohcta8 9 89977005 to 89977152 147 QTL ethanol conditioned taste aversion 8
D9Mit10 9 89977005 to 89977152 147 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 10
D9Dcr24 9 89977007 to 89977123 116 DNA segment DNA segment, Chr 9, Derry C. Roopenian 24
Gm23759 9 90031307 to 90031574 267 + unclassified non-coding RNA gene predicted gene, 23759
Gm17944 9 90033252 to 90033885 633 + pseudogene predicted gene, 17944
Tssr86446 9 90054246 to 90054259 13 + TSS region transcription start site region 86446
Ctsh 9 90054267 to 90076095 21828 + protein coding gene cathepsin H
Tssr86447 9 90054345 to 90054379 34 + TSS region transcription start site region 86447
Tssr86448 9 90054387 to 90054423 36 + TSS region transcription start site region 86448
Cpgi22130 9 90054404 to 90055038 634 CpG island CpG island 22130
Tssr86449 9 90054455 to 90054458 3 + TSS region transcription start site region 86449
Tssr2968 9 90054472 to 90054483 11 + TSS region transcription start site region 2968
Tssr86450 9 90054487 to 90054499 12 + TSS region transcription start site region 86450
Tssr86451 9 90054507 to 90054525 18 + TSS region transcription start site region 86451
Tssr86452 9 90054529 to 90054545 16 + TSS region transcription start site region 86452
Tssr86453 9 90054580 to 90054590 10 + TSS region transcription start site region 86453
Tssr86454 9 90054598 to 90054606 8 + TSS region transcription start site region 86454
Tssr86455 9 90055280 to 90055311 31 + TSS region transcription start site region 86455
Tssr86456 9 90064507 to 90064549 42 + TSS region transcription start site region 86456
Tssr86457 9 90067751 to 90067787 36 + TSS region transcription start site region 86457
Tssr86458 9 90073923 to 90073934 11 + TSS region transcription start site region 86458
Tssr86459 9 90074081 to 90074092 11 + TSS region transcription start site region 86459
Morf4l1 9 90091665 to 90114774 23109 - protein coding gene mortality factor 4 like 1
Gm26882 9 90094178 to 90095902 1724 + lincRNA gene predicted gene, 26882
Tssr90844 9 90096730 to 90096734 4 - TSS region transcription start site region 90844
Tssr90845 9 90107032 to 90107035 3 - TSS region transcription start site region 90845
Cpgi22131 9 90113688 to 90115229 1541 CpG island CpG island 22131
Tssr86460 9 90113935 to 90113965 30 + TSS region transcription start site region 86460
Tssr90846 9 90114358 to 90114383 25 - TSS region transcription start site region 90846
Tssr90847 9 90114677 to 90114786 109 - TSS region transcription start site region 90847
Tssr90848 9 90114788 to 90114797 9 - TSS region transcription start site region 90848
Tssr90849 9 90114812 to 90114821 9 - TSS region transcription start site region 90849
Gm6223 9 90118937 to 90119807 870 + pseudogene predicted gene 6223
n-TKctt18 9 90126509 to 90126581 72 - tRNA gene nuclear encoded tRNA lysine 18 (anticodon CTT)
9430062P05Rik 9 90156460 to 90159804 3344 - unclassified gene RIKEN cDNA 9430062P05 gene
Cpgi22132 9 90162751 to 90164139 1388 CpG island CpG island 22132
Adamts7 9 90162978 to 90200102 37124 + protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7
Tssr86461 9 90163008 to 90163037 29 + TSS region transcription start site region 86461
Tssr86462 9 90163057 to 90163101 44 + TSS region transcription start site region 86462
Tssr86463 9 90163102 to 90163120 18 + TSS region transcription start site region 86463
Tssr86464 9 90163166 to 90163173 7 + TSS region transcription start site region 86464
Tssr86465 9 90164882 to 90164886 4 + TSS region transcription start site region 86465
Cpgi22133 9 90171431 to 90171672 241 CpG island CpG island 22133
Tssr86466 9 90198688 to 90198722 34 + TSS region transcription start site region 86466
Tbc1d2b 9 90202047 to 90270769 68722 - protein coding gene TBC1 domain family, member 2B
Tssr90850 9 90202685 to 90202733 48 - TSS region transcription start site region 90850
Gm16200 9 90221295 to 90221625 330 - pseudogene predicted gene 16200
Tssr90851 9 90237616 to 90237617 1 - TSS region transcription start site region 90851
Tssr90852 9 90237999 to 90238022 23 - TSS region transcription start site region 90852
Tssr2969 9 90242996 to 90243001 5 - TSS region transcription start site region 2969
Tssr90853 9 90243019 to 90243033 14 - TSS region transcription start site region 90853
Tssr90854 9 90243113 to 90243120 7 - TSS region transcription start site region 90854
Tssr90855 9 90243121 to 90243133 12 - TSS region transcription start site region 90855
Tssr2970 9 90243139 to 90243147 8 - TSS region transcription start site region 2970
Tssr86467 9 90243301 to 90243312 11 + TSS region transcription start site region 86467
Tssr2971 9 90245301 to 90245350 49 - TSS region transcription start site region 2971
Tssr86468 9 90245426 to 90245435 9 + TSS region transcription start site region 86468
Tssr86469 9 90245441 to 90245453 12 + TSS region transcription start site region 86469
Tssr86470 9 90245465 to 90245475 10 + TSS region transcription start site region 86470
Tssr86471 9 90245487 to 90245502 15 + TSS region transcription start site region 86471
Tssr90856 9 90250529 to 90250563 34 - TSS region transcription start site region 90856
Tssr90857 9 90255932 to 90255943 11 - TSS region transcription start site region 90857
Cpgi22134 9 90270067 to 90270978 911 CpG island CpG island 22134
Tssr90858 9 90270712 to 90270799 87 - TSS region transcription start site region 90858
Gm30849 9 90315448 to 90317639 2191 + lincRNA gene predicted gene, 30849
Tssr86472 9 90315909 to 90315925 16 + TSS region transcription start site region 86472
Gm22717 9 90315910 to 90316080 170 + snRNA gene predicted gene, 22717
Tssr86473 9 90351992 to 90351998 6 + TSS region transcription start site region 86473
Gm22866 9 90351995 to 90352171 176 + snRNA gene predicted gene, 22866
Gm39398 9 90458976 to 90482876 23900 + lncRNA gene predicted gene, 39398
Gm30905 9 90687386 to 90704932 17546 - lncRNA gene predicted gene, 30905
Gm2497 9 90732924 to 90733524 600 - pseudogene predicted gene 2497
Gm29605 9 90734145 to 90734436 291 - pseudogene predicted gene 29605
Gm29604 9 90747380 to 90747542 162 - pseudogene predicted gene 29604