Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:88471036-88698823

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36 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Syncrip 9 88449364 to 88482397 33033 - protein coding gene synaptotagmin binding, cytoplasmic RNA interacting protein
Tssr90824 9 88475352 to 88475356 4 - TSS region transcription start site region 90824
Tssr90825 9 88476691 to 88476694 3 - TSS region transcription start site region 90825
Tssr90826 9 88480258 to 88480270 12 - TSS region transcription start site region 90826
Tssr90827 9 88480279 to 88480288 9 - TSS region transcription start site region 90827
Cpgi22116 9 88481008 to 88483410 2402 CpG island CpG island 22116
Tssr90828 9 88482532 to 88482587 55 - TSS region transcription start site region 90828
Tssr90829 9 88482593 to 88482600 7 - TSS region transcription start site region 90829
Snhg5 9 88521052 to 88522897 1845 - lncRNA gene small nucleolar RNA host gene 5
Snord50a 9 88521529 to 88521600 71 - snoRNA gene small nucleolar RNA, C/D box 50A
Snord50b 9 88521797 to 88521868 71 - snoRNA gene small nucleolar RNA, C/D box 50B
Cpgi22117 9 88522626 to 88523702 1076 CpG island CpG island 22117
Tssr90830 9 88522876 to 88522895 19 - TSS region transcription start site region 90830
Tssr2964 9 88523047 to 88523096 49 + TSS region transcription start site region 2964
Gm22985 9 88526679 to 88526794 115 - snRNA gene predicted gene, 22985
Tssr90831 9 88526786 to 88526797 11 - TSS region transcription start site region 90831
Tssr86412 9 88532922 to 88532928 6 + TSS region transcription start site region 86412
Tssr2965 9 88542417 to 88542418 1 + TSS region transcription start site region 2965
Tssr86413 9 88548013 to 88548123 110 + TSS region transcription start site region 86413
Zfp949 9 88548020 to 88571061 23041 + protein coding gene zinc finger protein 949
Cpgi22118 9 88548043 to 88548550 507 CpG island CpG island 22118
Tssr86414 9 88549862 to 88549864 2 + TSS region transcription start site region 86414
Tssr86415 9 88553227 to 88553235 8 + TSS region transcription start site region 86415
Gm26461 9 88553236 to 88553525 289 + unclassified non-coding RNA gene predicted gene, 26461
Trim43a 9 88581036 to 88588823 7787 + protein coding gene tripartite motif-containing 43A
9430037G07Rik 9 88595325 to 88599243 3918 - lincRNA gene RIKEN cDNA 9430037G07 gene
Gm29603 9 88597410 to 88597743 333 + pseudogene predicted gene 29603
Gm23017 9 88598348 to 88598419 71 - snoRNA gene predicted gene, 23017
Cpgi22119 9 88599265 to 88599681 416 CpG island CpG island 22119
Gm26567 9 88599469 to 88611855 12386 + lncRNA gene predicted gene, 26567
Gm29881 9 88611939 to 88638208 26269 + lncRNA gene predicted gene, 29881
Gm29415 9 88612345 to 88623323 10978 - lncRNA gene predicted gene 29415
Gm40540 9 88676159 to 88678440 2281 - lncRNA gene predicted gene, 40540
Gm38214 9 88680939 to 88681926 987 - unclassified gene predicted gene, 38214
Gm37226 9 88682932 to 88686186 3254 - unclassified gene predicted gene, 37226
Mthfsl 9 88688602 to 88720296 31694 - protein coding gene 5, 10-methenyltetrahydrofolate synthetase-like