Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000


Click here to work with the entire chromosomal region 9:88227609-88472089

Filter by:
40 genes found.
Gene symbol Chromo-
some
Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D9Mit291 9 88234126 to 88234235 109 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 291
Gm28231 9 88259895 to 88263035 3140 + lncRNA gene predicted gene 28231
Tssr90810 9 88273336 to 88273345 9 - TSS region transcription start site region 90810
Tssr90811 9 88273365 to 88273376 11 - TSS region transcription start site region 90811
Tssr2962 9 88273581 to 88273602 21 + TSS region transcription start site region 2962
Tssr2963 9 88274072 to 88274109 37 - TSS region transcription start site region 2963
Gm5066 9 88280369 to 88281190 821 - pseudogene predicted gene 5066
Cpgi22113 9 88286599 to 88286804 205 CpG island CpG island 22113
Gm47620 9 88286724 to 88287153 429 + pseudogene predicted gene, 47620
Tssr86405 9 88286795 to 88286815 20 + TSS region transcription start site region 86405
Gm51281 9 88325743 to 88325802 59 - miRNA gene predicted gene, 51281
Cpgi22114 9 88327021 to 88327977 956 CpG island CpG island 22114
Tssr86406 9 88327035 to 88327045 10 + TSS region transcription start site region 86406
Tssr86407 9 88327592 to 88327622 30 + TSS region transcription start site region 86407
Nt5e 9 88327609 to 88372089 44480 + protein coding gene 5' nucleotidase, ecto
Tssr86408 9 88327627 to 88327630 3 + TSS region transcription start site region 86408
Tssr86409 9 88327632 to 88327663 31 + TSS region transcription start site region 86409
Tssr86410 9 88359222 to 88359228 6 + TSS region transcription start site region 86410
Snx14 9 88376755 to 88438929 62174 - protein coding gene sorting nexin 14
Tssr90812 9 88380184 to 88380188 4 - TSS region transcription start site region 90812
Tssr90813 9 88380208 to 88380233 25 - TSS region transcription start site region 90813
Tssr90814 9 88380244 to 88380262 18 - TSS region transcription start site region 90814
Tssr86411 9 88390801 to 88390802 1 + TSS region transcription start site region 86411
Gm10163 9 88390837 to 88391317 480 + pseudogene predicted pseudogene 10163
Gm20537 9 88407432 to 88456616 49184 - protein coding gene predicted gene 20537
Tssr90815 9 88436600 to 88436624 24 - TSS region transcription start site region 90815
Cpgi22115 9 88438298 to 88439441 1143 CpG island CpG island 22115
4932427H20Rik 9 88438598 to 88441187 2589 + protein coding gene RIKEN cDNA 4932427H20 gene
Tssr90816 9 88438885 to 88438892 7 - TSS region transcription start site region 90816
Tssr90817 9 88438909 to 88438936 27 - TSS region transcription start site region 90817
Tssr90818 9 88438940 to 88438947 7 - TSS region transcription start site region 90818
Gm28229 9 88441500 to 88443652 2152 - lncRNA gene predicted gene 28229
Tssr90819 9 88444080 to 88444084 4 - TSS region transcription start site region 90819
2810019C22Rik 9 88447908 to 88448943 1035 - lncRNA gene RIKEN cDNA 2810019C22 gene
Syncrip 9 88449364 to 88482591 33227 - protein coding gene synaptotagmin binding, cytoplasmic RNA interacting protein
Tssr90820 9 88454265 to 88454291 26 - TSS region transcription start site region 90820
D9Ertd306e 9 88459142 to 88459350 208 DNA segment DNA segment, Chr 9, ERATO Doi 306, expressed
Tssr90821 9 88461022 to 88461026 4 - TSS region transcription start site region 90821
Tssr90822 9 88462990 to 88463002 12 - TSS region transcription start site region 90822
Tssr90823 9 88463012 to 88463024 12 - TSS region transcription start site region 90823