Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:87208581-89338602

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165 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tnbs1 9 85897510 to 87944172 2046662 QTL tri-nitrobenzene sulfonic acid susceptible 1
Cep162 9 87189577 to 87255536 65959 - protein coding gene centrosomal protein 162
Tssr90801 9 87209907 to 87209929 22 - TSS region transcription start site region 90801
Tssr90802 9 87209937 to 87209945 8 - TSS region transcription start site region 90802
Cpgi22110 9 87255092 to 87255677 585 CpG island CpG island 22110
Tssr90803 9 87255463 to 87255535 72 - TSS region transcription start site region 90803
Gm9540 9 87394250 to 87394727 477 + pseudogene predicted gene 9540
Gm37375 9 87498112 to 87498498 386 + unclassified gene predicted gene, 37375
Tbx18 9 87702800 to 87731260 28460 - protein coding gene T-box18
Tssr90804 9 87704225 to 87704234 9 - TSS region transcription start site region 90804
Tssr90805 9 87704868 to 87704879 11 - TSS region transcription start site region 90805
D030062O11Rik 9 87729285 to 87732090 2805 + unclassified gene RIKEN cDNA D030062O11 gene
Cpgi22111 9 87729371 to 87731464 2093 CpG island CpG island 22111
Tssr90806 9 87731136 to 87731157 21 - TSS region transcription start site region 90806
Tssr90807 9 87731163 to 87731172 9 - TSS region transcription start site region 90807
Tssr2959 9 87731237 to 87731244 7 - TSS region transcription start site region 2959
Tssr90808 9 87731248 to 87731273 25 - TSS region transcription start site region 90808
Tssr90809 9 87731274 to 87731285 11 - TSS region transcription start site region 90809
Tssr2960 9 87734921 to 87734928 7 - TSS region transcription start site region 2960
Gm37374 9 87738192 to 87740020 1828 - unclassified gene predicted gene, 37374
Cpgi22112 9 87739124 to 87740580 1456 CpG island CpG island 22112
Gm36767 9 87739778 to 87748985 9207 + lncRNA gene predicted gene, 36767
Tssr2961 9 87740010 to 87740025 15 - TSS region transcription start site region 2961
Gm9541 9 87769770 to 87770271 501 + pseudogene predicted gene 9541
Gm25528 9 87888456 to 87888587 131 - snoRNA gene predicted gene, 25528
D9Mit269 9 87944001 to 87944172 171 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 269
Gm23176 9 88021420 to 88021549 129 - snoRNA gene predicted gene, 23176
Gm28877 9 88039089 to 88039692 603 - pseudogene predicted gene 28877
Gm2324 9 88121295 to 88122765 1470 - pseudogene predicted gene 2324
Gm5368 9 88145969 to 88146557 588 + pseudogene predicted gene 5368
D9Mit291 9 88234126 to 88234235 109 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 291
Gm28231 9 88259895 to 88263035 3140 + lincRNA gene predicted gene 28231
Tssr90810 9 88273336 to 88273345 9 - TSS region transcription start site region 90810
Tssr90811 9 88273365 to 88273376 11 - TSS region transcription start site region 90811
Tssr2962 9 88273581 to 88273602 21 + TSS region transcription start site region 2962
Tssr2963 9 88274072 to 88274109 37 - TSS region transcription start site region 2963
Gm5066 9 88280369 to 88281190 821 - pseudogene predicted gene 5066
Cpgi22113 9 88286599 to 88286804 205 CpG island CpG island 22113
Gm47620 9 88286724 to 88287153 429 + pseudogene predicted gene, 47620
Tssr86405 9 88286795 to 88286815 20 + TSS region transcription start site region 86405
Cpgi22114 9 88327021 to 88327977 956 CpG island CpG island 22114
Tssr86406 9 88327035 to 88327045 10 + TSS region transcription start site region 86406
Tssr86407 9 88327592 to 88327622 30 + TSS region transcription start site region 86407
Nt5e 9 88327609 to 88372089 44480 + protein coding gene 5' nucleotidase, ecto
Tssr86408 9 88327627 to 88327630 3 + TSS region transcription start site region 86408
Tssr86409 9 88327632 to 88327663 31 + TSS region transcription start site region 86409
Tssr86410 9 88359222 to 88359228 6 + TSS region transcription start site region 86410
Snx14 9 88376750 to 88438958 62208 - protein coding gene sorting nexin 14
Tssr90812 9 88380184 to 88380188 4 - TSS region transcription start site region 90812
Tssr90813 9 88380208 to 88380233 25 - TSS region transcription start site region 90813
Tssr90814 9 88380244 to 88380262 18 - TSS region transcription start site region 90814
Tssr86411 9 88390801 to 88390802 1 + TSS region transcription start site region 86411
Gm10163 9 88390837 to 88391317 480 + pseudogene predicted pseudogene 10163
Gm20537 9 88407432 to 88456616 49184 - protein coding gene predicted gene 20537
Tssr90815 9 88436600 to 88436624 24 - TSS region transcription start site region 90815
Cpgi22115 9 88438298 to 88439441 1143 CpG island CpG island 22115
4932427H20Rik 9 88438597 to 88441186 2589 protein coding gene RIKEN cDNA 4932427H20 gene
Tssr90816 9 88438885 to 88438892 7 - TSS region transcription start site region 90816
Tssr90817 9 88438909 to 88438936 27 - TSS region transcription start site region 90817
Tssr90818 9 88438940 to 88438947 7 - TSS region transcription start site region 90818
Gm28229 9 88441500 to 88443652 2152 - sense intronic lncRNA gene predicted gene 28229
Tssr90819 9 88444080 to 88444084 4 - TSS region transcription start site region 90819
2810019C22Rik 9 88447907 to 88448942 1035 unclassified gene RIKEN cDNA 2810019C22 gene
Syncrip 9 88449364 to 88482397 33033 - protein coding gene synaptotagmin binding, cytoplasmic RNA interacting protein
Tssr90820 9 88454265 to 88454291 26 - TSS region transcription start site region 90820
D9Ertd306e 9 88459142 to 88459350 208 DNA segment DNA segment, Chr 9, ERATO Doi 306, expressed
Tssr90821 9 88461022 to 88461026 4 - TSS region transcription start site region 90821
Tssr90822 9 88462990 to 88463002 12 - TSS region transcription start site region 90822
Tssr90823 9 88463012 to 88463024 12 - TSS region transcription start site region 90823
Tssr90824 9 88475352 to 88475356 4 - TSS region transcription start site region 90824
Tssr90825 9 88476691 to 88476694 3 - TSS region transcription start site region 90825
Tssr90826 9 88480258 to 88480270 12 - TSS region transcription start site region 90826
Tssr90827 9 88480279 to 88480288 9 - TSS region transcription start site region 90827
Cpgi22116 9 88481008 to 88483410 2402 CpG island CpG island 22116
Tssr90828 9 88482532 to 88482587 55 - TSS region transcription start site region 90828
Tssr90829 9 88482593 to 88482600 7 - TSS region transcription start site region 90829
Snhg5 9 88521052 to 88522897 1845 - lncRNA gene small nucleolar RNA host gene 5
Snord50a 9 88521529 to 88521600 71 - snoRNA gene small nucleolar RNA, C/D box 50A
Snord50b 9 88521797 to 88521868 71 - snoRNA gene small nucleolar RNA, C/D box 50B
Cpgi22117 9 88522626 to 88523702 1076 CpG island CpG island 22117
Tssr90830 9 88522876 to 88522895 19 - TSS region transcription start site region 90830
Tssr2964 9 88523047 to 88523096 49 + TSS region transcription start site region 2964
Gm22985 9 88526679 to 88526794 115 - snRNA gene predicted gene, 22985
Tssr90831 9 88526786 to 88526797 11 - TSS region transcription start site region 90831
Tssr86412 9 88532922 to 88532928 6 + TSS region transcription start site region 86412
Tssr2965 9 88542417 to 88542418 1 + TSS region transcription start site region 2965
Tssr86413 9 88548013 to 88548123 110 + TSS region transcription start site region 86413
Zfp949 9 88548020 to 88571061 23041 + protein coding gene zinc finger protein 949
Cpgi22118 9 88548043 to 88548550 507 CpG island CpG island 22118
Tssr86414 9 88549862 to 88549864 2 + TSS region transcription start site region 86414
Tssr86415 9 88553227 to 88553235 8 + TSS region transcription start site region 86415
Gm26461 9 88553236 to 88553525 289 + unclassified non-coding RNA gene predicted gene, 26461
Trim43a 9 88581036 to 88588823 7787 + protein coding gene tripartite motif-containing 43A
9430037G07Rik 9 88595325 to 88599243 3918 - lincRNA gene RIKEN cDNA 9430037G07 gene
Gm29603 9 88597410 to 88597743 333 + pseudogene predicted gene 29603
Gm23017 9 88598348 to 88598419 71 - snoRNA gene predicted gene, 23017
Cpgi22119 9 88599265 to 88599681 416 CpG island CpG island 22119
Gm26567 9 88599469 to 88611855 12386 + lncRNA gene predicted gene, 26567
Gm29881 9 88611939 to 88638208 26269 + lncRNA gene predicted gene, 29881
Gm29415 9 88612345 to 88623323 10978 - lncRNA gene predicted gene 29415
Gm40540 9 88676159 to 88678440 2281 - lncRNA gene predicted gene, 40540
Gm38214 9 88680939 to 88681926 987 - unclassified gene predicted gene, 38214
Gm37226 9 88682932 to 88686186 3254 - unclassified gene predicted gene, 37226
Mthfsl 9 88688602 to 88720296 31694 - protein coding gene 5, 10-methenyltetrahydrofolate synthetase-like
Tssr90832 9 88719321 to 88719327 6 - TSS region transcription start site region 90832
Bcl2a1d 9 88723288 to 88731850 8562 - protein coding gene B cell leukemia/lymphoma 2 related protein A1d
Tssr90833 9 88731718 to 88731759 41 - TSS region transcription start site region 90833
Tssr86416 9 88731992 to 88732001 9 + TSS region transcription start site region 86416
Gm37560 9 88731998 to 88732997 999 + unclassified gene predicted gene, 37560
Tssr86417 9 88735677 to 88735688 11 + TSS region transcription start site region 86417
Gm10634 9 88745262 to 88830918 85656 + antisense lncRNA gene predicted gene 10634
Gm40539 9 88746784 to 88748129 1345 - lncRNA gene predicted gene, 40539
Tssr2966 9 88748056 to 88748060 4 + TSS region transcription start site region 2966
Gm26082 9 88770355 to 88770481 126 - snoRNA gene predicted gene, 26082
Gm37614 9 88826604 to 88826813 209 - unclassified gene predicted gene, 37614
Gm29562 9 88827522 to 88828425 903 + lincRNA gene predicted gene 29562
Trim43c 9 88839164 to 88848190 9026 + protein coding gene tripartite motif-containing 43C
9330159M07Rik 9 88841798 to 88858870 17072 - lncRNA gene RIKEN cDNA 9330159M07 gene
Tssr90834 9 88845616 to 88845629 13 - TSS region transcription start site region 90834
Gm9775 9 88856756 to 88857086 330 + pseudogene predicted gene 9775
Gm26135 9 88857693 to 88857764 71 - snoRNA gene predicted gene, 26135
Cpgi22120 9 88858790 to 88859150 360 CpG island CpG island 22120
Gm26611 9 88859011 to 88883554 24543 + lincRNA gene predicted gene, 26611
Gm2396 9 88878994 to 88937342 58348 - unclassified non-coding RNA gene predicted gene 2396
Gm23707 9 88917832 to 88917956 124 + snoRNA gene predicted gene, 23707
Bcl2a1a 9 88956920 to 88962416 5496 + protein coding gene B cell leukemia/lymphoma 2 related protein A1a
Tssr86418 9 88956979 to 88957003 24 + TSS region transcription start site region 86418
Tssr86419 9 88957011 to 88957022 11 + TSS region transcription start site region 86419
Tssr86420 9 88957024 to 88957036 12 + TSS region transcription start site region 86420
Tssr90835 9 88959103 to 88959110 7 - TSS region transcription start site region 90835
Gm37833 9 88980921 to 88984176 3255 + unclassified gene predicted gene, 37833
Gm37993 9 88985191 to 88986178 987 + unclassified gene predicted gene, 37993
Cpgi22121 9 89066637 to 89066810 173 CpG island CpG island 22121
Tssr86421 9 89066970 to 89066976 6 + TSS region transcription start site region 86421
Tssr86422 9 89067047 to 89067051 4 + TSS region transcription start site region 86422
Gm24463 9 89075336 to 89075407 71 + snoRNA gene predicted gene, 24463
Gm19498 9 89076012 to 89076342 330 - pseudogene predicted gene, 19498
Trim43b 9 89084624 to 89092835 8211 - protein coding gene tripartite motif-containing 43B
Gm40542 9 89087641 to 89088408 767 + lncRNA gene predicted gene, 40542
Tssr90836 9 89092682 to 89092691 9 - TSS region transcription start site region 90836
4930579C12Rik 9 89113111 to 89177887 64776 - lincRNA gene RIKEN cDNA 4930579C12 gene
Gm26423 9 89158999 to 89159126 127 + snoRNA gene predicted gene, 26423
Tssr90837 9 89177883 to 89177888 5 - TSS region transcription start site region 90837
Gm40544 9 89178012 to 89179160 1148 + lncRNA gene predicted gene, 40544
Bcl2a1b 9 89199273 to 89207838 8565 + protein coding gene B cell leukemia/lymphoma 2 related protein A1b
Tssr86423 9 89199297 to 89199310 13 + TSS region transcription start site region 86423
Tssr86424 9 89199319 to 89199332 13 + TSS region transcription start site region 86424
Tssr2967 9 89199354 to 89199357 3 + TSS region transcription start site region 2967
Gm29094 9 89199379 to 89215471 16092 + protein coding gene predicted gene 29094
Tssr86425 9 89211162 to 89211196 34 + TSS region transcription start site region 86425
Mthfs 9 89211190 to 89240225 29035 + protein coding gene 5, 10-methenyltetrahydrofolate synthetase
Tssr86426 9 89211206 to 89211226 20 + TSS region transcription start site region 86426
Tssr86427 9 89211233 to 89211253 20 + TSS region transcription start site region 86427
Tssr86428 9 89211283 to 89211297 14 + TSS region transcription start site region 86428
Cpgi22122 9 89211294 to 89211539 245 CpG island CpG island 22122
Tssr86429 9 89211412 to 89211444 32 + TSS region transcription start site region 86429
Tssr86430 9 89211633 to 89211640 7 + TSS region transcription start site region 86430
Tssr86431 9 89218448 to 89218459 11 + TSS region transcription start site region 86431
Tssr86432 9 89248508 to 89248527 19 + TSS region transcription start site region 86432
Tssr86433 9 89248537 to 89248548 11 + TSS region transcription start site region 86433
Tssr86434 9 89248550 to 89248564 14 + TSS region transcription start site region 86434
Gm38091 9 89259525 to 89263395 3870 - unclassified gene predicted gene, 38091
D9Mit290 9 89286256 to 89286372 116 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 290
Tssr86435 9 89317120 to 89317126 6 + TSS region transcription start site region 86435
Tssr86436 9 89335374 to 89335380 6 + TSS region transcription start site region 86436