Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:86909778-88578985

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109 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tnbs1 9 85897510 to 87944172 2046662 QTL tri-nitrobenzene sulfonic acid susceptible 1
Gm39389 9 86954959 to 86962806 7847 - lncRNA gene predicted gene, 39389
Gm36539 9 86981991 to 87006163 24172 - lincRNA gene predicted gene, 36539
Cpgi22107 9 87015174 to 87016214 1040 CpG island CpG island 22107
Ripply2 9 87015537 to 87019917 4380 + protein coding gene ripply transcriptional repressor 2
Cpgi22108 9 87021870 to 87022464 594 CpG island CpG island 22108
Cyb5r4 9 87022014 to 87077774 55760 + protein coding gene cytochrome b5 reductase 4
Tssr86403 9 87022018 to 87022080 62 + TSS region transcription start site region 86403
Gm8282 9 87127086 to 87127547 461 + pseudogene predicted gene 8282
Cpgi22109 9 87144090 to 87144860 770 CpG island CpG island 22109
Tssr86404 9 87144285 to 87144317 32 + TSS region transcription start site region 86404
Mrap2 9 87144306 to 87184045 39739 + protein coding gene melanocortin 2 receptor accessory protein 2
D9Mit9.2 9 87178064 to 87178186 122 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 9.2
D9Mit271.1 9 87178980 to 87179089 109 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 271.1
D9Mit271 9 87179037 to 87179139 102 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 271
D9Mit271.2 9 87179122 to 87179249 127 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 271.2
Gm37012 9 87188336 to 87189413 1077 - unclassified gene predicted gene, 37012
Cep162 9 87189577 to 87255536 65959 - protein coding gene centrosomal protein 162
Gm24649 9 87200109 to 87200242 133 + rRNA gene predicted gene, 24649
Tssr90801 9 87209907 to 87209929 22 - TSS region transcription start site region 90801
Tssr90802 9 87209937 to 87209945 8 - TSS region transcription start site region 90802
Cpgi22110 9 87255092 to 87255677 585 CpG island CpG island 22110
Tssr90803 9 87255463 to 87255535 72 - TSS region transcription start site region 90803
Gm9540 9 87394250 to 87394727 477 + pseudogene predicted gene 9540
Gm37375 9 87498112 to 87498498 386 + unclassified gene predicted gene, 37375
Tbx18 9 87702800 to 87731260 28460 - protein coding gene T-box18
Tssr90804 9 87704225 to 87704234 9 - TSS region transcription start site region 90804
Tssr90805 9 87704868 to 87704879 11 - TSS region transcription start site region 90805
D030062O11Rik 9 87729285 to 87732090 2805 + unclassified gene RIKEN cDNA D030062O11 gene
Cpgi22111 9 87729371 to 87731464 2093 CpG island CpG island 22111
Tssr90806 9 87731136 to 87731157 21 - TSS region transcription start site region 90806
Tssr90807 9 87731163 to 87731172 9 - TSS region transcription start site region 90807
Tssr2959 9 87731237 to 87731244 7 - TSS region transcription start site region 2959
Tssr90808 9 87731248 to 87731273 25 - TSS region transcription start site region 90808
Tssr90809 9 87731274 to 87731285 11 - TSS region transcription start site region 90809
Tssr2960 9 87734921 to 87734928 7 - TSS region transcription start site region 2960
Gm37374 9 87738192 to 87740020 1828 - unclassified gene predicted gene, 37374
Cpgi22112 9 87739124 to 87740580 1456 CpG island CpG island 22112
Gm36767 9 87739778 to 87748985 9207 + lncRNA gene predicted gene, 36767
Tssr2961 9 87740010 to 87740025 15 - TSS region transcription start site region 2961
Gm9541 9 87769770 to 87770271 501 + pseudogene predicted gene 9541
Gm25528 9 87888456 to 87888587 131 - snoRNA gene predicted gene, 25528
D9Mit269 9 87944001 to 87944172 171 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 269
Gm23176 9 88021420 to 88021549 129 - snoRNA gene predicted gene, 23176
Gm28877 9 88039089 to 88039692 603 - pseudogene predicted gene 28877
Gm2324 9 88121295 to 88122765 1470 - pseudogene predicted gene 2324
Gm5368 9 88145969 to 88146557 588 + pseudogene predicted gene 5368
D9Mit291 9 88234126 to 88234235 109 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 291
Gm28231 9 88259895 to 88263035 3140 + lincRNA gene predicted gene 28231
Tssr90810 9 88273336 to 88273345 9 - TSS region transcription start site region 90810
Tssr90811 9 88273365 to 88273376 11 - TSS region transcription start site region 90811
Tssr2962 9 88273581 to 88273602 21 + TSS region transcription start site region 2962
Tssr2963 9 88274072 to 88274109 37 - TSS region transcription start site region 2963
Gm5066 9 88280369 to 88281190 821 - pseudogene predicted gene 5066
Cpgi22113 9 88286599 to 88286804 205 CpG island CpG island 22113
Gm47620 9 88286724 to 88287153 429 + pseudogene predicted gene, 47620
Tssr86405 9 88286795 to 88286815 20 + TSS region transcription start site region 86405
Cpgi22114 9 88327021 to 88327977 956 CpG island CpG island 22114
Tssr86406 9 88327035 to 88327045 10 + TSS region transcription start site region 86406
Tssr86407 9 88327592 to 88327622 30 + TSS region transcription start site region 86407
Nt5e 9 88327609 to 88372089 44480 + protein coding gene 5' nucleotidase, ecto
Tssr86408 9 88327627 to 88327630 3 + TSS region transcription start site region 86408
Tssr86409 9 88327632 to 88327663 31 + TSS region transcription start site region 86409
Tssr86410 9 88359222 to 88359228 6 + TSS region transcription start site region 86410
Snx14 9 88376750 to 88438958 62208 - protein coding gene sorting nexin 14
Tssr90812 9 88380184 to 88380188 4 - TSS region transcription start site region 90812
Tssr90813 9 88380208 to 88380233 25 - TSS region transcription start site region 90813
Tssr90814 9 88380244 to 88380262 18 - TSS region transcription start site region 90814
Tssr86411 9 88390801 to 88390802 1 + TSS region transcription start site region 86411
Gm10163 9 88390837 to 88391317 480 + pseudogene predicted pseudogene 10163
Gm20537 9 88407432 to 88456616 49184 - protein coding gene predicted gene 20537
Tssr90815 9 88436600 to 88436624 24 - TSS region transcription start site region 90815
Cpgi22115 9 88438298 to 88439441 1143 CpG island CpG island 22115
4932427H20Rik 9 88438597 to 88441186 2589 protein coding gene RIKEN cDNA 4932427H20 gene
Tssr90816 9 88438885 to 88438892 7 - TSS region transcription start site region 90816
Tssr90817 9 88438909 to 88438936 27 - TSS region transcription start site region 90817
Tssr90818 9 88438940 to 88438947 7 - TSS region transcription start site region 90818
Gm28229 9 88441500 to 88443652 2152 - sense intronic lncRNA gene predicted gene 28229
Tssr90819 9 88444080 to 88444084 4 - TSS region transcription start site region 90819
2810019C22Rik 9 88447907 to 88448942 1035 unclassified gene RIKEN cDNA 2810019C22 gene
Syncrip 9 88449364 to 88482397 33033 - protein coding gene synaptotagmin binding, cytoplasmic RNA interacting protein
Tssr90820 9 88454265 to 88454291 26 - TSS region transcription start site region 90820
D9Ertd306e 9 88459142 to 88459350 208 DNA segment DNA segment, Chr 9, ERATO Doi 306, expressed
Tssr90821 9 88461022 to 88461026 4 - TSS region transcription start site region 90821
Tssr90822 9 88462990 to 88463002 12 - TSS region transcription start site region 90822
Tssr90823 9 88463012 to 88463024 12 - TSS region transcription start site region 90823
Tssr90824 9 88475352 to 88475356 4 - TSS region transcription start site region 90824
Tssr90825 9 88476691 to 88476694 3 - TSS region transcription start site region 90825
Tssr90826 9 88480258 to 88480270 12 - TSS region transcription start site region 90826
Tssr90827 9 88480279 to 88480288 9 - TSS region transcription start site region 90827
Cpgi22116 9 88481008 to 88483410 2402 CpG island CpG island 22116
Tssr90828 9 88482532 to 88482587 55 - TSS region transcription start site region 90828
Tssr90829 9 88482593 to 88482600 7 - TSS region transcription start site region 90829
Snhg5 9 88521052 to 88522897 1845 - lncRNA gene small nucleolar RNA host gene 5
Snord50a 9 88521529 to 88521600 71 - snoRNA gene small nucleolar RNA, C/D box 50A
Snord50b 9 88521797 to 88521868 71 - snoRNA gene small nucleolar RNA, C/D box 50B
Cpgi22117 9 88522626 to 88523702 1076 CpG island CpG island 22117
Tssr90830 9 88522876 to 88522895 19 - TSS region transcription start site region 90830
Tssr2964 9 88523047 to 88523096 49 + TSS region transcription start site region 2964
Gm22985 9 88526679 to 88526794 115 - snRNA gene predicted gene, 22985
Tssr90831 9 88526786 to 88526797 11 - TSS region transcription start site region 90831
Tssr86412 9 88532922 to 88532928 6 + TSS region transcription start site region 86412
Tssr2965 9 88542417 to 88542418 1 + TSS region transcription start site region 2965
Tssr86413 9 88548013 to 88548123 110 + TSS region transcription start site region 86413
Zfp949 9 88548020 to 88571061 23041 + protein coding gene zinc finger protein 949
Cpgi22118 9 88548043 to 88548550 507 CpG island CpG island 22118
Tssr86414 9 88549862 to 88549864 2 + TSS region transcription start site region 86414
Tssr86415 9 88553227 to 88553235 8 + TSS region transcription start site region 86415
Gm26461 9 88553236 to 88553525 289 + unclassified non-coding RNA gene predicted gene, 26461