Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:85551363-87725914

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129 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Neogq1 9 57897764 to 86239920 28342156 QTL neonatal growth QTL 1
Smgd1 9 65923774 to 86695914 20772140 QTL submucosal gland distribution 1
Gm48834 9 85519493 to 85553765 34272 - lincRNA gene predicted gene, 48834
Gm48842 9 85637289 to 85639567 2278 - lincRNA gene predicted gene, 48842
Ibtk 9 85687360 to 85749334 61974 - protein coding gene inhibitor of Bruton agammaglobulinemia tyrosine kinase
Tssr90775 9 85710400 to 85710407 7 - TSS region transcription start site region 90775
Tssr90776 9 85710413 to 85710439 26 - TSS region transcription start site region 90776
Cpgi22099 9 85748578 to 85749693 1115 CpG island CpG island 22099
Tssr86382 9 85748727 to 85748756 29 + TSS region transcription start site region 86382
4933431K14Rik 9 85749078 to 85750429 1351 + unclassified gene RIKEN cDNA 4933431K14 gene
Tssr90777 9 85749286 to 85749303 17 - TSS region transcription start site region 90777
Tssr90778 9 85749308 to 85749356 48 - TSS region transcription start site region 90778
Gm22830 9 85772351 to 85772480 129 - snoRNA gene predicted gene, 22830
Gm5619 9 85781868 to 85782627 759 - pseudogene predicted gene 5619
Gm18766 9 85789770 to 85790573 803 - pseudogene predicted gene, 18766
D9Mit113 9 85796734 to 85796870 136 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 113
9330154J02Rik 9 85839106 to 85843659 4553 - unclassified non-coding RNA gene RIKEN cDNA 9330154J02 gene
Cpgi22100 9 85842111 to 85844992 2881 CpG island CpG island 22100
Tpbg 9 85842380 to 85847040 4660 + protein coding gene trophoblast glycoprotein
Tssr86383 9 85842531 to 85842542 11 + TSS region transcription start site region 86383
Tssr2955 9 85842709 to 85842721 12 + TSS region transcription start site region 2955
Tssr86384 9 85842724 to 85842761 37 + TSS region transcription start site region 86384
Tssr86385 9 85842862 to 85842880 18 + TSS region transcription start site region 86385
Tssr86386 9 85842883 to 85842902 19 + TSS region transcription start site region 86386
Tssr86387 9 85843372 to 85843386 14 + TSS region transcription start site region 86387
Tssr86388 9 85845318 to 85845321 3 + TSS region transcription start site region 86388
Tssr86389 9 85845501 to 85845505 4 + TSS region transcription start site region 86389
Tssr86390 9 85845598 to 85845601 3 + TSS region transcription start site region 86390
Tnbs1 9 85897510 to 87944172 2046662 QTL tri-nitrobenzene sulfonic acid susceptible 1
D9Mit196 9 85897510 to 85897652 142 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 196
Bmd10 9 85897510 to 85897652 142 QTL bone mineral density 10
Vtbt8 9 85897510 to 85897652 142 QTL vertebral trabecular bone trait 8
Gm47604 9 85941038 to 85943200 2162 - lincRNA gene predicted gene, 47604
D9Mit180 9 86166090 to 86166205 115 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 180
Gm18016 9 86173931 to 86174772 841 - pseudogene predicted gene, 18016
D9Mit11 9 86239845 to 86239920 75 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 11
Pas4 9 86239845 to 86239920 75 QTL pulmonary adenoma susceptibility 4
Ube2cbp 9 86307306 to 86464950 157644 - protein coding gene ubiquitin-conjugating enzyme E2C binding protein
Gm16202 9 86316149 to 86316691 542 - pseudogene predicted gene 16202
Tssr90779 9 86359598 to 86359602 4 - TSS region transcription start site region 90779
Cpgi22101 9 86464490 to 86465117 627 CpG island CpG island 22101
Tssr90780 9 86464900 to 86464943 43 - TSS region transcription start site region 90780
Tssr90781 9 86464944 to 86464958 14 - TSS region transcription start site region 90781
Cpgi22102 9 86466917 to 86467855 938 CpG island CpG island 22102
Dop1a 9 86467154 to 86555806 88652 + protein coding gene DOP1 leucine zipper like protein A
Tssr86391 9 86467163 to 86467170 7 + TSS region transcription start site region 86391
Tssr86392 9 86467173 to 86467219 46 + TSS region transcription start site region 86392
Tssr86393 9 86467224 to 86467261 37 + TSS region transcription start site region 86393
Tssr2956 9 86467959 to 86467964 5 + TSS region transcription start site region 2956
Tssr86394 9 86507128 to 86507132 4 + TSS region transcription start site region 86394
Tssr86395 9 86545230 to 86545242 12 + TSS region transcription start site region 86395
Tssr86396 9 86545256 to 86545269 13 + TSS region transcription start site region 86396
Hpic1 9 86546513 to 86546645 132 QTL haloperidol-induced catalepsy 1
D9Mit111 9 86546513 to 86546645 132 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 111
Gm17530 9 86546682 to 86547153 471 - protein coding gene predicted gene, 17530
Pgm3 9 86554377 to 86571842 17465 - protein coding gene phosphoglucomutase 3
Tssr90782 9 86571093 to 86571116 23 - TSS region transcription start site region 90782
Tssr90783 9 86571118 to 86571130 12 - TSS region transcription start site region 90783
Cpgi22103 9 86571437 to 86572490 1053 CpG island CpG island 22103
Tssr90784 9 86571775 to 86571847 72 - TSS region transcription start site region 90784
Tssr86397 9 86571965 to 86572021 56 + TSS region transcription start site region 86397
Rwdd2a 9 86571991 to 86574899 2908 + protein coding gene RWD domain containing 2A
Me1 9 86581363 to 86695914 114551 - protein coding gene malic enzyme 1, NADP(+)-dependent, cytosolic
Tssr90785 9 86587613 to 86587619 6 - TSS region transcription start site region 90785
D9Mit135 9 86648657 to 86648794 137 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 135
D9Ertd305e 9 86651873 to 86652091 218 DNA segment DNA segment, Chr 9, ERATO Doi 305, expressed
Gm38230 9 86684050 to 86685208 1158 - unclassified gene predicted gene, 38230
Cpgi22104 9 86695213 to 86696369 1156 CpG island CpG island 22104
A330041J22Rik 9 86695460 to 86701253 5793 + antisense lncRNA gene RIKEN cDNA A330041J22 gene
Tssr90786 9 86695640 to 86695656 16 - TSS region transcription start site region 90786
Tssr90787 9 86695670 to 86695678 8 - TSS region transcription start site region 90787
Tssr90788 9 86695771 to 86695789 18 - TSS region transcription start site region 90788
Tssr90789 9 86695838 to 86695854 16 - TSS region transcription start site region 90789
Tssr90790 9 86695897 to 86695958 61 - TSS region transcription start site region 90790
Gm25949 9 86699043 to 86699156 113 - snRNA gene predicted gene, 25949
Tssr86398 9 86701426 to 86701476 50 + TSS region transcription start site region 86398
Gm22138 9 86703819 to 86703946 127 + snoRNA gene predicted gene, 22138
Gm37484 9 86712004 to 86714526 2522 + unclassified gene predicted gene, 37484
Tssr86399 9 86743248 to 86743281 33 + TSS region transcription start site region 86399
Tssr86400 9 86743616 to 86743638 22 + TSS region transcription start site region 86400
Tssr86401 9 86743641 to 86743654 13 + TSS region transcription start site region 86401
Prss35 9 86743649 to 86758443 14794 + protein coding gene protease, serine 35
Tssr2957 9 86743660 to 86743669 9 + TSS region transcription start site region 2957
Cpgi22105 9 86755991 to 86756438 447 CpG island CpG island 22105
Tssr86402 9 86757869 to 86757871 2 + TSS region transcription start site region 86402
Snap91 9 86765923 to 86880654 114731 - protein coding gene synaptosomal-associated protein 91
Gm37941 9 86784547 to 86786855 2308 - unclassified gene predicted gene, 37941
Tssr90791 9 86792030 to 86792041 11 - TSS region transcription start site region 90791
Tssr90792 9 86798877 to 86798884 7 - TSS region transcription start site region 90792
Tssr2958 9 86798914 to 86798933 19 - TSS region transcription start site region 2958
Tssr90793 9 86858406 to 86858411 5 - TSS region transcription start site region 90793
Cpgi22106 9 86879194 to 86881096 1902 CpG island CpG island 22106
Tssr90794 9 86880365 to 86880372 7 - TSS region transcription start site region 90794
Tssr90795 9 86880403 to 86880412 9 - TSS region transcription start site region 90795
Tssr90796 9 86880414 to 86880467 53 - TSS region transcription start site region 90796
Tssr90797 9 86880481 to 86880484 3 - TSS region transcription start site region 90797
Tssr90798 9 86880491 to 86880502 11 - TSS region transcription start site region 90798
Tssr90799 9 86880647 to 86880659 12 - TSS region transcription start site region 90799
Tssr90800 9 86880698 to 86880712 14 - TSS region transcription start site region 90800
Gm39389 9 86954959 to 86962806 7847 - lncRNA gene predicted gene, 39389
Gm36539 9 86981991 to 87006163 24172 - lincRNA gene predicted gene, 36539
Cpgi22107 9 87015174 to 87016214 1040 CpG island CpG island 22107
Ripply2 9 87015537 to 87019917 4380 + protein coding gene ripply transcriptional repressor 2
Cpgi22108 9 87021870 to 87022464 594 CpG island CpG island 22108
Cyb5r4 9 87022014 to 87077774 55760 + protein coding gene cytochrome b5 reductase 4
Tssr86403 9 87022018 to 87022080 62 + TSS region transcription start site region 86403
Gm8282 9 87127086 to 87127547 461 + pseudogene predicted gene 8282
Cpgi22109 9 87144090 to 87144860 770 CpG island CpG island 22109
Tssr86404 9 87144285 to 87144317 32 + TSS region transcription start site region 86404
Mrap2 9 87144306 to 87184045 39739 + protein coding gene melanocortin 2 receptor accessory protein 2
D9Mit9.2 9 87178064 to 87178186 122 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 9.2
D9Mit271.1 9 87178980 to 87179089 109 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 271.1
D9Mit271 9 87179037 to 87179139 102 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 271
D9Mit271.2 9 87179122 to 87179249 127 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 271.2
Gm37012 9 87188336 to 87189413 1077 - unclassified gene predicted gene, 37012
Cep162 9 87189577 to 87255536 65959 - protein coding gene centrosomal protein 162
Gm24649 9 87200109 to 87200242 133 + rRNA gene predicted gene, 24649
Tssr90801 9 87209907 to 87209929 22 - TSS region transcription start site region 90801
Tssr90802 9 87209937 to 87209945 8 - TSS region transcription start site region 90802
Cpgi22110 9 87255092 to 87255677 585 CpG island CpG island 22110
Tssr90803 9 87255463 to 87255535 72 - TSS region transcription start site region 90803
Gm9540 9 87394250 to 87394727 477 + pseudogene predicted gene 9540
Gm37375 9 87498112 to 87498498 386 + unclassified gene predicted gene, 37375
Tbx18 9 87702800 to 87731260 28460 - protein coding gene T-box18
Tssr90804 9 87704225 to 87704234 9 - TSS region transcription start site region 90804
Tssr90805 9 87704868 to 87704879 11 - TSS region transcription start site region 90805
Ltw3 9 107920383 to 86581363 -21339020 heritable phenotypic marker liver 20-30 thousand Mol. Wt. protein 3
Msam3 9 108641186 to 85897510 -22743676 QTL muscle, skeletal, activity measure 3
Dob2 9 120289624 to 86239845 -34049779 QTL dietary obesity 2