Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:84965501-86725505

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107 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Neogq1 9 57897764 to 86239920 28342156 QTL neonatal growth QTL 1
Smgd1 9 65923774 to 86695914 20772140 QTL submucosal gland distribution 1
Gm8228 9 84972823 to 84976145 3322 - pseudogene predicted gene 8228
Tssr90763 9 85096589 to 85096625 36 - TSS region transcription start site region 90763
Gm28070 9 85104765 to 85105209 444 + pseudogene predicted gene 28070
Gm48830 9 85221196 to 85234582 13386 - lincRNA gene predicted gene, 48830
Gm48831 9 85238908 to 85240041 1133 - lincRNA gene predicted gene, 48831
Gm11114 9 85312773 to 85312860 87 + protein coding gene predicted gene 11114
Tssr90764 9 85319515 to 85319528 13 - TSS region transcription start site region 90764
Tent5a 9 85320439 to 85327150 6711 - protein coding gene terminal nucleotidyltransferase 5A
Tssr90765 9 85323175 to 85323184 9 - TSS region transcription start site region 90765
Tssr90766 9 85323389 to 85323393 4 - TSS region transcription start site region 90766
Tssr90767 9 85323739 to 85323771 32 - TSS region transcription start site region 90767
Tssr90768 9 85323960 to 85323974 14 - TSS region transcription start site region 90768
Cpgi22098 9 85326191 to 85328628 2437 CpG island CpG island 22098
Tssr90769 9 85327110 to 85327128 18 - TSS region transcription start site region 90769
Tssr90770 9 85327137 to 85327157 20 - TSS region transcription start site region 90770
Tssr2954 9 85327272 to 85327283 11 - TSS region transcription start site region 2954
Tssr90771 9 85327289 to 85327304 15 - TSS region transcription start site region 90771
Tssr86380 9 85327410 to 85327440 30 + TSS region transcription start site region 86380
Tssr86381 9 85327893 to 85327941 48 + TSS region transcription start site region 86381
Tssr90772 9 85328453 to 85328481 28 - TSS region transcription start site region 90772
Gm48832 9 85332352 to 85348065 15713 - lincRNA gene predicted gene, 48832
Gm36927 9 85342511 to 85344351 1840 - unclassified gene predicted gene, 36927
Tssr90773 9 85348044 to 85348065 21 - TSS region transcription start site region 90773
Tssr90774 9 85350384 to 85350387 3 - TSS region transcription start site region 90774
Gm48833 9 85418035 to 85419158 1123 - lincRNA gene predicted gene, 48833
Gm25125 9 85472734 to 85472869 135 + snoRNA gene predicted gene, 25125
Gm48834 9 85519493 to 85553765 34272 - lincRNA gene predicted gene, 48834
Gm48842 9 85637289 to 85639567 2278 - lincRNA gene predicted gene, 48842
Ibtk 9 85687360 to 85749334 61974 - protein coding gene inhibitor of Bruton agammaglobulinemia tyrosine kinase
Tssr90775 9 85710400 to 85710407 7 - TSS region transcription start site region 90775
Tssr90776 9 85710413 to 85710439 26 - TSS region transcription start site region 90776
Cpgi22099 9 85748578 to 85749693 1115 CpG island CpG island 22099
Tssr86382 9 85748727 to 85748756 29 + TSS region transcription start site region 86382
4933431K14Rik 9 85749078 to 85750429 1351 + unclassified gene RIKEN cDNA 4933431K14 gene
Tssr90777 9 85749286 to 85749303 17 - TSS region transcription start site region 90777
Tssr90778 9 85749308 to 85749356 48 - TSS region transcription start site region 90778
Gm22830 9 85772351 to 85772480 129 - snoRNA gene predicted gene, 22830
Gm5619 9 85781868 to 85782627 759 - pseudogene predicted gene 5619
Gm18766 9 85789770 to 85790573 803 - pseudogene predicted gene, 18766
D9Mit113 9 85796734 to 85796870 136 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 113
9330154J02Rik 9 85839106 to 85843659 4553 - unclassified non-coding RNA gene RIKEN cDNA 9330154J02 gene
Cpgi22100 9 85842111 to 85844992 2881 CpG island CpG island 22100
Tpbg 9 85842380 to 85847040 4660 + protein coding gene trophoblast glycoprotein
Tssr86383 9 85842531 to 85842542 11 + TSS region transcription start site region 86383
Tssr2955 9 85842709 to 85842721 12 + TSS region transcription start site region 2955
Tssr86384 9 85842724 to 85842761 37 + TSS region transcription start site region 86384
Tssr86385 9 85842862 to 85842880 18 + TSS region transcription start site region 86385
Tssr86386 9 85842883 to 85842902 19 + TSS region transcription start site region 86386
Tssr86387 9 85843372 to 85843386 14 + TSS region transcription start site region 86387
Tssr86388 9 85845318 to 85845321 3 + TSS region transcription start site region 86388
Tssr86389 9 85845501 to 85845505 4 + TSS region transcription start site region 86389
Tssr86390 9 85845598 to 85845601 3 + TSS region transcription start site region 86390
Tnbs1 9 85897510 to 87944172 2046662 QTL tri-nitrobenzene sulfonic acid susceptible 1
D9Mit196 9 85897510 to 85897652 142 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 196
Bmd10 9 85897510 to 85897652 142 QTL bone mineral density 10
Vtbt8 9 85897510 to 85897652 142 QTL vertebral trabecular bone trait 8
Gm47604 9 85941038 to 85943200 2162 - lincRNA gene predicted gene, 47604
D9Mit180 9 86166090 to 86166205 115 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 180
Gm18016 9 86173931 to 86174772 841 - pseudogene predicted gene, 18016
D9Mit11 9 86239845 to 86239920 75 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 11
Pas4 9 86239845 to 86239920 75 QTL pulmonary adenoma susceptibility 4
Ube2cbp 9 86307306 to 86464950 157644 - protein coding gene ubiquitin-conjugating enzyme E2C binding protein
Gm16202 9 86316149 to 86316691 542 - pseudogene predicted gene 16202
Tssr90779 9 86359598 to 86359602 4 - TSS region transcription start site region 90779
Cpgi22101 9 86464490 to 86465117 627 CpG island CpG island 22101
Tssr90780 9 86464900 to 86464943 43 - TSS region transcription start site region 90780
Tssr90781 9 86464944 to 86464958 14 - TSS region transcription start site region 90781
Cpgi22102 9 86466917 to 86467855 938 CpG island CpG island 22102
Dop1a 9 86467154 to 86555806 88652 + protein coding gene DOP1 leucine zipper like protein A
Tssr86391 9 86467163 to 86467170 7 + TSS region transcription start site region 86391
Tssr86392 9 86467173 to 86467219 46 + TSS region transcription start site region 86392
Tssr86393 9 86467224 to 86467261 37 + TSS region transcription start site region 86393
Tssr2956 9 86467959 to 86467964 5 + TSS region transcription start site region 2956
Tssr86394 9 86507128 to 86507132 4 + TSS region transcription start site region 86394
Tssr86395 9 86545230 to 86545242 12 + TSS region transcription start site region 86395
Tssr86396 9 86545256 to 86545269 13 + TSS region transcription start site region 86396
Hpic1 9 86546513 to 86546645 132 QTL haloperidol-induced catalepsy 1
D9Mit111 9 86546513 to 86546645 132 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 111
Gm17530 9 86546682 to 86547153 471 - protein coding gene predicted gene, 17530
Pgm3 9 86554377 to 86571842 17465 - protein coding gene phosphoglucomutase 3
Tssr90782 9 86571093 to 86571116 23 - TSS region transcription start site region 90782
Tssr90783 9 86571118 to 86571130 12 - TSS region transcription start site region 90783
Cpgi22103 9 86571437 to 86572490 1053 CpG island CpG island 22103
Tssr90784 9 86571775 to 86571847 72 - TSS region transcription start site region 90784
Tssr86397 9 86571965 to 86572021 56 + TSS region transcription start site region 86397
Rwdd2a 9 86571991 to 86574899 2908 + protein coding gene RWD domain containing 2A
Me1 9 86581363 to 86695914 114551 - protein coding gene malic enzyme 1, NADP(+)-dependent, cytosolic
Tssr90785 9 86587613 to 86587619 6 - TSS region transcription start site region 90785
D9Mit135 9 86648657 to 86648794 137 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 135
D9Ertd305e 9 86651873 to 86652091 218 DNA segment DNA segment, Chr 9, ERATO Doi 305, expressed
Gm38230 9 86684050 to 86685208 1158 - unclassified gene predicted gene, 38230
Cpgi22104 9 86695213 to 86696369 1156 CpG island CpG island 22104
A330041J22Rik 9 86695460 to 86701253 5793 + antisense lncRNA gene RIKEN cDNA A330041J22 gene
Tssr90786 9 86695640 to 86695656 16 - TSS region transcription start site region 90786
Tssr90787 9 86695670 to 86695678 8 - TSS region transcription start site region 90787
Tssr90788 9 86695771 to 86695789 18 - TSS region transcription start site region 90788
Tssr90789 9 86695838 to 86695854 16 - TSS region transcription start site region 90789
Tssr90790 9 86695897 to 86695958 61 - TSS region transcription start site region 90790
Gm25949 9 86699043 to 86699156 113 - snRNA gene predicted gene, 25949
Tssr86398 9 86701426 to 86701476 50 + TSS region transcription start site region 86398
Gm22138 9 86703819 to 86703946 127 + snoRNA gene predicted gene, 22138
Gm37484 9 86712004 to 86714526 2522 + unclassified gene predicted gene, 37484
Ltw3 9 107920383 to 86581363 -21339020 heritable phenotypic marker liver 20-30 thousand Mol. Wt. protein 3
Msam3 9 108641186 to 85897510 -22743676 QTL muscle, skeletal, activity measure 3
Dob2 9 120289624 to 86239845 -34049779 QTL dietary obesity 2