Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:83100125-83400132

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28 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm38398 9 83098224 to 83106330 8106 + lincRNA gene predicted gene, 38398
Tssr86348 9 83100655 to 83100677 22 + TSS region transcription start site region 86348
Hmgn3 9 83109948 to 83146685 36737 - protein coding gene high mobility group nucleosomal binding domain 3
Tssr90740 9 83112572 to 83112594 22 - TSS region transcription start site region 90740
Tssr86349 9 83112582 to 83112593 11 + TSS region transcription start site region 86349
Tssr90741 9 83112595 to 83112618 23 - TSS region transcription start site region 90741
Gm2065 9 83114108 to 83116864 2756 + lncRNA gene predicted gene 2065
D9Dcr21 9 83121465 to 83121560 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 21
Tssr90742 9 83141179 to 83141185 6 - TSS region transcription start site region 90742
Cpgi22091 9 83145670 to 83146809 1139 CpG island CpG island 22091
Gm29054 9 83145915 to 83147364 1449 + unclassified non-coding RNA gene predicted gene 29054
Tssr90743 9 83146501 to 83146506 5 - TSS region transcription start site region 90743
Tssr90744 9 83146528 to 83146588 60 - TSS region transcription start site region 90744
Tssr90745 9 83146601 to 83146614 13 - TSS region transcription start site region 90745
Gm38279 9 83174647 to 83175777 1130 - unclassified gene predicted gene, 38279
Lith5 9 83207024 to 83207122 98 QTL lithogenic gene 5
D9Mit307 9 83207024 to 83207122 98 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 307
Gm27216 9 83240481 to 83254540 14059 - lincRNA gene predicted gene 27216
Tssr90746 9 83250125 to 83250132 7 - TSS region transcription start site region 90746
Tssr90747 9 83250221 to 83250238 17 - TSS region transcription start site region 90747
Tssr90748 9 83254440 to 83254455 15 - TSS region transcription start site region 90748
Tssr90749 9 83254460 to 83254519 59 - TSS region transcription start site region 90749
Tssr2952 9 83254533 to 83254540 7 - TSS region transcription start site region 2952
D9Mit265 9 83315456 to 83315599 143 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 265
Gm46122 9 83316276 to 83328800 12524 + lncRNA gene predicted gene, 46122
Gm40536 9 83345038 to 83349706 4668 - lncRNA gene predicted gene, 40536
Gm46123 9 83351769 to 83353979 2210 + lincRNA gene predicted gene, 46123
Lca5 9 83391355 to 83441737 50382 - protein coding gene Leber congenital amaurosis 5 (human)