Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:82973619-86373623

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197 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Neogq1 9 57897764 to 86239920 28342156 QTL neonatal growth QTL 1
Phip 9 82866159 to 82975516 109357 - protein coding gene pleckstrin homology domain interacting protein
Cpgi22090 9 82974147 to 82976123 1976 CpG island CpG island 22090
Tssr90732 9 82974282 to 82974318 36 - TSS region transcription start site region 90732
Tssr90733 9 82974952 to 82974987 35 - TSS region transcription start site region 90733
Tssr90734 9 82975114 to 82975153 39 - TSS region transcription start site region 90734
Tssr90735 9 82975379 to 82975396 17 - TSS region transcription start site region 90735
Tssr90736 9 82975407 to 82975466 59 - TSS region transcription start site region 90736
Tssr90737 9 82975475 to 82975493 18 - TSS region transcription start site region 90737
Tssr90738 9 82975695 to 82975732 37 - TSS region transcription start site region 90738
Tssr86345 9 82976171 to 82976175 4 + TSS region transcription start site region 86345
Tssr2951 9 82985910 to 82985911 1 + TSS region transcription start site region 2951
Tssr86346 9 83008594 to 83008624 30 + TSS region transcription start site region 86346
Gm39383 9 83008603 to 83042603 34000 + lincRNA gene predicted gene, 39383
Tssr86347 9 83014855 to 83014864 9 + TSS region transcription start site region 86347
Tssr90739 9 83023987 to 83024007 20 - TSS region transcription start site region 90739
Gm35746 9 83068100 to 83072769 4669 - lncRNA gene predicted gene, 35746
Gm27248 9 83073223 to 83073388 165 - pseudogene predicted gene 27248
2810410P21Rik 9 83085969 to 83087996 2027 unclassified gene RIKEN cDNA 2810410P21 gene
Gm38398 9 83098224 to 83106330 8106 + lincRNA gene predicted gene, 38398
Tssr86348 9 83100655 to 83100677 22 + TSS region transcription start site region 86348
Hmgn3 9 83109948 to 83146685 36737 - protein coding gene high mobility group nucleosomal binding domain 3
Tssr90740 9 83112572 to 83112594 22 - TSS region transcription start site region 90740
Tssr86349 9 83112582 to 83112593 11 + TSS region transcription start site region 86349
Tssr90741 9 83112595 to 83112618 23 - TSS region transcription start site region 90741
Gm2065 9 83114108 to 83116864 2756 + lncRNA gene predicted gene 2065
D9Dcr21 9 83121465 to 83121560 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 21
Tssr90742 9 83141179 to 83141185 6 - TSS region transcription start site region 90742
Cpgi22091 9 83145670 to 83146809 1139 CpG island CpG island 22091
Gm29054 9 83145915 to 83147364 1449 + unclassified non-coding RNA gene predicted gene 29054
Tssr90743 9 83146501 to 83146506 5 - TSS region transcription start site region 90743
Tssr90744 9 83146528 to 83146588 60 - TSS region transcription start site region 90744
Tssr90745 9 83146601 to 83146614 13 - TSS region transcription start site region 90745
Gm38279 9 83174647 to 83175777 1130 - unclassified gene predicted gene, 38279
D9Mit307 9 83207024 to 83207122 98 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 307
Lith5 9 83207024 to 83207122 98 QTL lithogenic gene 5
Gm27216 9 83240481 to 83254540 14059 - lincRNA gene predicted gene 27216
Tssr90746 9 83250125 to 83250132 7 - TSS region transcription start site region 90746
Tssr90747 9 83250221 to 83250238 17 - TSS region transcription start site region 90747
Tssr90748 9 83254440 to 83254455 15 - TSS region transcription start site region 90748
Tssr90749 9 83254460 to 83254519 59 - TSS region transcription start site region 90749
Tssr2952 9 83254533 to 83254540 7 - TSS region transcription start site region 2952
D9Mit265 9 83315456 to 83315599 143 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 265
Gm46122 9 83316276 to 83328800 12524 + lncRNA gene predicted gene, 46122
Gm40536 9 83345038 to 83349706 4668 - lncRNA gene predicted gene, 40536
Gm46123 9 83351769 to 83353979 2210 + lincRNA gene predicted gene, 46123
Lca5 9 83391355 to 83441737 50382 - protein coding gene Leber congenital amaurosis 5 (human)
Tssr86350 9 83409619 to 83409621 2 + TSS region transcription start site region 86350
Rps27a-ps2 9 83409660 to 83410126 466 + pseudogene ribosomal protein S27A, pseudogene 2
Tssr86351 9 83431523 to 83431530 7 + TSS region transcription start site region 86351
Gm2087 9 83431547 to 83454573 23026 + antisense lncRNA gene predicted gene 2087
Tssr90750 9 83434608 to 83434614 6 - TSS region transcription start site region 90750
Cpgi22092 9 83440818 to 83441388 570 CpG island CpG island 22092
Tssr90751 9 83441065 to 83441110 45 - TSS region transcription start site region 90751
Gm37307 9 83447559 to 83450179 2620 + unclassified gene predicted gene, 37307
Cpgi22093 9 83447780 to 83448197 417 CpG island CpG island 22093
Tssr90752 9 83447957 to 83447975 18 - TSS region transcription start site region 90752
Gm28552 9 83480032 to 83480419 387 + pseudogene predicted gene 28552
Gm28477 9 83497666 to 83498071 405 + pseudogene predicted gene 28477
Cpgi22094 9 83547891 to 83548749 858 CpG island CpG island 22094
Tssr86352 9 83548279 to 83548298 19 + TSS region transcription start site region 86352
Tssr86353 9 83548309 to 83548334 25 + TSS region transcription start site region 86353
Sh3bgrl2 9 83548338 to 83600292 51954 + protein coding gene SH3 domain binding glutamic acid-rich protein like 2
Tssr86354 9 83548342 to 83548357 15 + TSS region transcription start site region 86354
Gm39384 9 83571560 to 83573289 1729 - lincRNA gene predicted gene, 39384
Tssr90753 9 83587242 to 83587259 17 - TSS region transcription start site region 90753
Tssr86355 9 83587953 to 83587968 15 + TSS region transcription start site region 86355
Tssr86356 9 83587974 to 83587987 13 + TSS region transcription start site region 86356
Tssr90754 9 83613944 to 83613948 4 - TSS region transcription start site region 90754
Tssr86357 9 83664963 to 83664966 3 + TSS region transcription start site region 86357
Gm36120 9 83679389 to 83681643 2254 - lincRNA gene predicted gene, 36120
Gm2109 9 83691475 to 83693223 1748 + lincRNA gene predicted gene 2109
Gm39385 9 83700481 to 83710981 10500 + lncRNA gene predicted gene, 39385
Gm39386 9 83726146 to 83728320 2174 + lncRNA gene predicted gene, 39386
Elovl4 9 83778692 to 83806277 27585 - protein coding gene elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4
Tssr90755 9 83779089 to 83779093 4 - TSS region transcription start site region 90755
Tssr90756 9 83805342 to 83805343 1 - TSS region transcription start site region 90756
Cpgi22095 9 83805355 to 83806705 1350 CpG island CpG island 22095
Tssr90757 9 83806159 to 83806170 11 - TSS region transcription start site region 90757
Tssr90758 9 83806187 to 83806194 7 - TSS region transcription start site region 90758
Tssr90759 9 83806241 to 83806260 19 - TSS region transcription start site region 90759
Tssr90760 9 83806264 to 83806281 17 - TSS region transcription start site region 90760
Cpgi22096 9 83834348 to 83835045 697 CpG island CpG island 22096
Tssr90761 9 83834543 to 83834566 23 - TSS region transcription start site region 90761
Tssr86358 9 83834645 to 83834668 23 + TSS region transcription start site region 86358
Tssr86359 9 83834684 to 83834736 52 + TSS region transcription start site region 86359
Ttk 9 83834689 to 83872389 37700 + protein coding gene Ttk protein kinase
Tssr86360 9 83843132 to 83843143 11 + TSS region transcription start site region 86360
Tssr86361 9 83866561 to 83866570 9 + TSS region transcription start site region 86361
Gm39387 9 83880883 to 83897223 16340 - lncRNA gene predicted gene, 39387
Gm36278 9 83921821 to 83925005 3184 - lincRNA gene predicted gene, 36278
Cpgi22097 9 83924867 to 83925562 695 CpG island CpG island 22097
Tssr86362 9 83925118 to 83925175 57 + TSS region transcription start site region 86362
Bckdhb 9 83925145 to 84124240 199095 + protein coding gene branched chain ketoacid dehydrogenase E1, beta polypeptide
Tssr86363 9 83925183 to 83925194 11 + TSS region transcription start site region 86363
Gm29163 9 83938369 to 83938475 106 - snRNA gene predicted gene 29163
Tssr86364 9 83938463 to 83938467 4 + TSS region transcription start site region 86364
Tssr86365 9 83939068 to 83939083 15 + TSS region transcription start site region 86365
Tssr86366 9 83939124 to 83939137 13 + TSS region transcription start site region 86366
Gm29164 9 83965984 to 83967007 1023 - pseudogene predicted gene 29164
Tssr86367 9 84002999 to 84003002 3 + TSS region transcription start site region 86367
Tssr86368 9 84007492 to 84007495 3 + TSS region transcription start site region 86368
Gm46124 9 84009139 to 84024817 15678 - antisense lncRNA gene predicted gene, 46124
Tssr86369 9 84037823 to 84037842 19 + TSS region transcription start site region 86369
Tssr86370 9 84037845 to 84037863 18 + TSS region transcription start site region 86370
Tssr86371 9 84041315 to 84041319 4 + TSS region transcription start site region 86371
Tssr86372 9 84045887 to 84045894 7 + TSS region transcription start site region 86372
Tssr86373 9 84049350 to 84049363 13 + TSS region transcription start site region 86373
Tssr86374 9 84053172 to 84053173 1 + TSS region transcription start site region 86374
D9Mit133 9 84091180 to 84091306 126 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 133
Tssr86375 9 84104228 to 84104233 5 + TSS region transcription start site region 86375
Tssr90762 9 84114480 to 84114508 28 - TSS region transcription start site region 90762
Heal29 9 84124167 to 84124167 0 QTL wound healing/regeneration 29
Gm26146 9 84188355 to 84188539 184 + snRNA gene predicted gene, 26146
Tssr86376 9 84234151 to 84234154 3 + TSS region transcription start site region 86376
Tssr86377 9 84239305 to 84239309 4 + TSS region transcription start site region 86377
Gm18487 9 84385456 to 84386555 1099 - pseudogene predicted gene, 18487
Tssr86378 9 84423949 to 84423957 8 + TSS region transcription start site region 86378
Gm8226 9 84423984 to 84424781 797 + pseudogene predicted gene 8226
Gm39388 9 84582141 to 84613493 31352 + lincRNA gene predicted gene, 39388
Gm26126 9 84649496 to 84649659 163 + snRNA gene predicted gene, 26126
Tssr86379 9 84652707 to 84652711 4 + TSS region transcription start site region 86379
Tssr2953 9 84673619 to 84673623 4 + TSS region transcription start site region 2953
Gm48811 9 84676576 to 84677002 426 - pseudogene predicted gene, 48811
D9Mit195 9 84771600 to 84771749 149 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 195
4930554C24Rik 9 84774398 to 84784351 9953 + lincRNA gene RIKEN cDNA 4930554C24 gene
Gm36366 9 84778796 to 84785030 6234 - lncRNA gene predicted gene, 36366
Gm48820 9 84858707 to 84862914 4207 + lincRNA gene predicted gene, 48820
Gm28625 9 84890545 to 84890749 204 + lincRNA gene predicted gene 28625
D9Nds1 9 84891404 to 84891581 177 DNA segment DNA segment, Chr 9, Nuffield Department of Surgery 1
Gm48821 9 84892120 to 84924633 32513 - lincRNA gene predicted gene, 48821
Gm8228 9 84972823 to 84976145 3322 - pseudogene predicted gene 8228
Tssr90763 9 85096589 to 85096625 36 - TSS region transcription start site region 90763
Gm28070 9 85104765 to 85105209 444 + pseudogene predicted gene 28070
Gm48830 9 85221196 to 85234582 13386 - lincRNA gene predicted gene, 48830
Gm48831 9 85238908 to 85240041 1133 - lincRNA gene predicted gene, 48831
Gm11114 9 85312773 to 85312860 87 + protein coding gene predicted gene 11114
Tssr90764 9 85319515 to 85319528 13 - TSS region transcription start site region 90764
Tent5a 9 85320439 to 85327150 6711 - protein coding gene terminal nucleotidyltransferase 5A
Tssr90765 9 85323175 to 85323184 9 - TSS region transcription start site region 90765
Tssr90766 9 85323389 to 85323393 4 - TSS region transcription start site region 90766
Tssr90767 9 85323739 to 85323771 32 - TSS region transcription start site region 90767
Tssr90768 9 85323960 to 85323974 14 - TSS region transcription start site region 90768
Cpgi22098 9 85326191 to 85328628 2437 CpG island CpG island 22098
Tssr90769 9 85327110 to 85327128 18 - TSS region transcription start site region 90769
Tssr90770 9 85327137 to 85327157 20 - TSS region transcription start site region 90770
Tssr2954 9 85327272 to 85327283 11 - TSS region transcription start site region 2954
Tssr90771 9 85327289 to 85327304 15 - TSS region transcription start site region 90771
Tssr86380 9 85327410 to 85327440 30 + TSS region transcription start site region 86380
Tssr86381 9 85327893 to 85327941 48 + TSS region transcription start site region 86381
Tssr90772 9 85328453 to 85328481 28 - TSS region transcription start site region 90772
Gm48832 9 85332352 to 85348065 15713 - lincRNA gene predicted gene, 48832
Gm36927 9 85342511 to 85344351 1840 - unclassified gene predicted gene, 36927
Tssr90773 9 85348044 to 85348065 21 - TSS region transcription start site region 90773
Tssr90774 9 85350384 to 85350387 3 - TSS region transcription start site region 90774
Gm48833 9 85418035 to 85419158 1123 - lincRNA gene predicted gene, 48833
Gm25125 9 85472734 to 85472869 135 + snoRNA gene predicted gene, 25125
Gm48834 9 85519493 to 85553765 34272 - lincRNA gene predicted gene, 48834
Gm48842 9 85637289 to 85639567 2278 - lincRNA gene predicted gene, 48842
Ibtk 9 85687360 to 85749334 61974 - protein coding gene inhibitor of Bruton agammaglobulinemia tyrosine kinase
Tssr90775 9 85710400 to 85710407 7 - TSS region transcription start site region 90775
Tssr90776 9 85710413 to 85710439 26 - TSS region transcription start site region 90776
Cpgi22099 9 85748578 to 85749693 1115 CpG island CpG island 22099
Tssr86382 9 85748727 to 85748756 29 + TSS region transcription start site region 86382
4933431K14Rik 9 85749078 to 85750429 1351 + unclassified gene RIKEN cDNA 4933431K14 gene
Tssr90777 9 85749286 to 85749303 17 - TSS region transcription start site region 90777
Tssr90778 9 85749308 to 85749356 48 - TSS region transcription start site region 90778
Gm22830 9 85772351 to 85772480 129 - snoRNA gene predicted gene, 22830
Gm5619 9 85781868 to 85782627 759 - pseudogene predicted gene 5619
Gm18766 9 85789770 to 85790573 803 - pseudogene predicted gene, 18766
D9Mit113 9 85796734 to 85796870 136 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 113
9330154J02Rik 9 85839106 to 85843659 4553 - unclassified non-coding RNA gene RIKEN cDNA 9330154J02 gene
Cpgi22100 9 85842111 to 85844992 2881 CpG island CpG island 22100
Tpbg 9 85842380 to 85847040 4660 + protein coding gene trophoblast glycoprotein
Tssr86383 9 85842531 to 85842542 11 + TSS region transcription start site region 86383
Tssr2955 9 85842709 to 85842721 12 + TSS region transcription start site region 2955
Tssr86384 9 85842724 to 85842761 37 + TSS region transcription start site region 86384
Tssr86385 9 85842862 to 85842880 18 + TSS region transcription start site region 86385
Tssr86386 9 85842883 to 85842902 19 + TSS region transcription start site region 86386
Tssr86387 9 85843372 to 85843386 14 + TSS region transcription start site region 86387
Tssr86388 9 85845318 to 85845321 3 + TSS region transcription start site region 86388
Tssr86389 9 85845501 to 85845505 4 + TSS region transcription start site region 86389
Tssr86390 9 85845598 to 85845601 3 + TSS region transcription start site region 86390
Vtbt8 9 85897510 to 85897652 142 QTL vertebral trabecular bone trait 8
Tnbs1 9 85897510 to 87944172 2046662 QTL tri-nitrobenzene sulfonic acid susceptible 1
Bmd10 9 85897510 to 85897652 142 QTL bone mineral density 10
D9Mit196 9 85897510 to 85897652 142 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 196
Gm47604 9 85941038 to 85943200 2162 - lincRNA gene predicted gene, 47604
D9Mit180 9 86166090 to 86166205 115 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 180
Gm18016 9 86173931 to 86174772 841 - pseudogene predicted gene, 18016
Pas4 9 86239845 to 86239920 75 QTL pulmonary adenoma susceptibility 4
D9Mit11 9 86239845 to 86239920 75 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 11
Ube2cbp 9 86307306 to 86464950 157644 - protein coding gene ubiquitin-conjugating enzyme E2C binding protein
Gm16202 9 86316149 to 86316691 542 - pseudogene predicted gene 16202
Tssr90779 9 86359598 to 86359602 4 - TSS region transcription start site region 90779
Msam3 9 108641186 to 85897510 -22743676 QTL muscle, skeletal, activity measure 3
Dob2 9 120289624 to 86239845 -34049779 QTL dietary obesity 2