Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:8260047-12330156

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D9Mit250 9 8393623 to 8393745 122 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 250
Gm47517 9 8476273 to 8476487 214 + pseudogene predicted gene, 47517
Cpgi21347 9 8543958 to 8544803 845 CpG island CpG island 21347
Trpc6 9 8544142 to 8680741 136599 + protein coding gene transient receptor potential cation channel, subfamily C, member 6
Tssr83785 9 8544199 to 8544225 26 + TSS region transcription start site region 83785
Tssr83786 9 8544227 to 8544258 31 + TSS region transcription start site region 83786
Tssr83787 9 8544500 to 8544532 32 + TSS region transcription start site region 83787
Gm10708 9 8555222 to 8555448 226 protein coding gene predicted gene 10708
Gm32014 9 8644078 to 8740988 96910 - lincRNA gene predicted gene, 32014
Tssr88121 9 8693288 to 8693308 20 - TSS region transcription start site region 88121
D9Mit217 9 8751397 to 8751633 236 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 217
Tssr88122 9 8752254 to 8752260 6 - TSS region transcription start site region 88122
Tssr83788 9 8859329 to 8859332 3 + TSS region transcription start site region 83788
Tssr83789 9 8899828 to 8899855 27 + TSS region transcription start site region 83789
Pgr 9 8899833 to 8968611 68778 + protein coding gene progesterone receptor
Cpgi21348 9 8900152 to 8902198 2046 CpG island CpG island 21348
Tssr83790 9 8900409 to 8900425 16 + TSS region transcription start site region 83790
Tssr83791 9 8900459 to 8900489 30 + TSS region transcription start site region 83791
Tssr83792 9 8900490 to 8900502 12 + TSS region transcription start site region 83792
Tssr83793 9 8900563 to 8900574 11 + TSS region transcription start site region 83793
Tssr83794 9 8901535 to 8901549 14 + TSS region transcription start site region 83794
Tssr83795 9 8901699 to 8901784 85 + TSS region transcription start site region 83795
Gm16485 9 8971791 to 8975773 3982 + protein coding gene predicted gene 16485
Arhgap42 9 8994329 to 9239101 244772 - protein coding gene Rho GTPase activating protein 42
D9Mit218 9 9025264 to 9025387 123 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 218
D9Mit249 9 9107561 to 9107685 124 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 249
Mdq19 9 9141014 to 9141014 0 QTL mammary ductal QTL 19
Tssr88123 9 9142423 to 9142427 4 - TSS region transcription start site region 88123
Tssr88124 9 9227503 to 9227507 4 - TSS region transcription start site region 88124
Gm16833 9 9236288 to 9260883 24595 + antisense lncRNA gene predicted gene, 16833
Cpgi21349 9 9238483 to 9239490 1007 CpG island CpG island 21349
Tssr88125 9 9238950 to 9238964 14 - TSS region transcription start site region 88125
Tssr88126 9 9238989 to 9239001 12 - TSS region transcription start site region 88126
Tssr88127 9 9239019 to 9239042 23 - TSS region transcription start site region 88127
Tssr88128 9 9239052 to 9239095 43 - TSS region transcription start site region 88128
Tssr88129 9 9239107 to 9239124 17 - TSS region transcription start site region 88129
Tssr88130 9 9269358 to 9269396 38 - TSS region transcription start site region 88130
Gm22815 9 9301391 to 9301452 61 + snRNA gene predicted gene, 22815
Gm47333 9 9434592 to 9434893 301 + pseudogene predicted gene, 47333
Tssr83796 9 9434628 to 9434653 25 + TSS region transcription start site region 83796
Gm47334 9 9564087 to 9583564 19477 + lincRNA gene predicted gene, 47334
Gm46102 9 9579337 to 9619784 40447 - lincRNA gene predicted gene, 46102
Gm26195 9 9670941 to 9671041 100 - miRNA gene predicted gene, 26195
D9Mit1011 9 9777414 to 9777526 112 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1011
D9Mit1010 9 9777520 to 9777668 148 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1010
Mir6237 9 9894431 to 9894521 90 + miRNA gene microRNA 6237
D9Dcr136 9 10009317 to 10009416 99 DNA segment DNA Segment, Chr 9, Derry C. Roopenian 136
D9Mit43 9 10079318 to 10079449 131 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 43
Gm39289 9 10080457 to 10092882 12425 + lncRNA gene predicted gene, 39289
Tssr83797 9 10080484 to 10080527 43 + TSS region transcription start site region 83797
Gm24496 9 10290478 to 10290587 109 - miRNA gene predicted gene, 24496
Gm25086 9 10295047 to 10295156 109 - miRNA gene predicted gene, 25086
D9Mit251 9 10324074 to 10324198 124 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 251
Tssr88131 9 10412300 to 10412303 3 - TSS region transcription start site region 88131
Tssr83798 9 10446538 to 10446552 14 + TSS region transcription start site region 83798
Gm46103 9 10475935 to 10476275 340 + pseudogene predicted gene, 46103
D9Mit1009 9 10666974 to 10667134 160 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 1009
Gm7529 9 10734640 to 10736536 1896 + pseudogene predicted gene 7529
2900012M01Rik 9 10789123 to 10790554 1431 unclassified gene RIKEN cDNA 2900012M01 gene
Gm32710 9 10904345 to 10907818 3473 + antisense lncRNA gene predicted gene, 32710
Cpgi21350 9 10904426 to 10905028 602 CpG island CpG island 21350
Tssr88132 9 10904697 to 10904708 11 - TSS region transcription start site region 88132
Tssr88133 9 10904744 to 10904765 21 - TSS region transcription start site region 88133
Tssr88134 9 10904766 to 10904835 69 - TSS region transcription start site region 88134
Cntn5 9 10904775 to 9660891 -1243884 - protein coding gene contactin 5
Tssr88135 9 10904853 to 10904864 11 - TSS region transcription start site region 88135
Gm18488 9 11014450 to 11014813 363 + pseudogene predicted gene, 18488
D9Mit161 9 11059103 to 11059249 146 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 161
Gm47001 9 11102513 to 11119398 16885 + lincRNA gene predicted gene, 47001
Tssr83799 9 11104411 to 11104459 48 + TSS region transcription start site region 83799
Tssr88136 9 11108058 to 11108061 3 - TSS region transcription start site region 88136
Gm47002 9 11148600 to 11167495 18895 + lincRNA gene predicted gene, 47002
Gm47029 9 11238604 to 11238870 266 - pseudogene predicted gene, 47029
Gm18934 9 11277000 to 11278043 1043 - pseudogene predicted gene, 18934
Cpgi21351 9 11277641 to 11278175 534 CpG island CpG island 21351
Gm47034 9 11516862 to 11584845 67983 - lincRNA gene predicted gene, 47034
Gm18160 9 11527694 to 11528402 708 + pseudogene predicted gene, 18160
Gm47035 9 11541735 to 11541989 254 + pseudogene predicted gene, 47035
Gm47037 9 11975653 to 11978249 2596 - unclassified gene predicted gene, 47037
Tssr83800 9 12059893 to 12059896 3 + TSS region transcription start site region 83800
Gm29785 9 12233994 to 12234376 382 + pseudogene predicted gene, 29785
Sles4 9 37395074 to 9107561 -28287513 QTL systemic lupus erythmatosus suppressor 4