Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:82112572-84112594

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139 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mei4 9 81863670 to 82206007 342337 + protein coding gene meiotic double-stranded break formation protein 4
Gm19228 9 82196485 to 82197195 710 - pseudogene predicted gene, 19228
Gm15896 9 82202648 to 82203398 750 + pseudogene predicted gene 15896
Gm23748 9 82247848 to 82247978 130 + snoRNA gene predicted gene, 23748
Gm35548 9 82249931 to 82260208 10277 - lincRNA gene predicted gene, 35548
1700063H06Rik 9 82260293 to 82263485 3192 + lincRNA gene RIKEN cDNA 1700063H06 gene
Gm22836 9 82439414 to 82439474 60 - snRNA gene predicted gene, 22836
Gm24393 9 82463356 to 82463452 96 - snRNA gene predicted gene, 24393
Gm27249 9 82524991 to 82525318 327 + pseudogene predicted gene 27249
D9Dcr19 9 82533497 to 82533600 103 DNA segment DNA segment, Chr 9, Derry C. Roopenian 19
Gm35690 9 82541508 to 82559701 18193 + lncRNA gene predicted gene, 35690
D9Mit237 9 82813466 to 82813606 140 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 237
Cpgi22089 9 82829539 to 82830681 1142 CpG island CpG island 22089
Irak1bp1 9 82829806 to 82847688 17882 + protein coding gene interleukin-1 receptor-associated kinase 1 binding protein 1
Tssr86341 9 82829818 to 82829834 16 + TSS region transcription start site region 86341
Tssr86342 9 82829931 to 82829942 11 + TSS region transcription start site region 86342
Tssr86343 9 82829967 to 82830076 109 + TSS region transcription start site region 86343
Tssr86344 9 82830441 to 82830476 35 + TSS region transcription start site region 86344
Gm38553 9 82853079 to 82865332 12253 + lncRNA gene predicted gene, 38553
Phip 9 82866159 to 82975516 109357 - protein coding gene pleckstrin homology domain interacting protein
Tssr90724 9 82900801 to 82900844 43 - TSS region transcription start site region 90724
Tssr90725 9 82903149 to 82903177 28 - TSS region transcription start site region 90725
Tssr90726 9 82908037 to 82908042 5 - TSS region transcription start site region 90726
Tssr90727 9 82908713 to 82908755 42 - TSS region transcription start site region 90727
Tssr90728 9 82928873 to 82928882 9 - TSS region transcription start site region 90728
Tssr90729 9 82938141 to 82938146 5 - TSS region transcription start site region 90729
D9Dcr20 9 82946667 to 82946770 103 DNA segment DNA segment, Chr 9, Derry C. Roopenian 20
Tssr90730 9 82951466 to 82951475 9 - TSS region transcription start site region 90730
Gm39382 9 82959858 to 82966042 6184 - lncRNA gene predicted gene, 39382
Tssr90731 9 82971862 to 82971866 4 - TSS region transcription start site region 90731
Cpgi22090 9 82974147 to 82976123 1976 CpG island CpG island 22090
Tssr90732 9 82974282 to 82974318 36 - TSS region transcription start site region 90732
Tssr90733 9 82974952 to 82974987 35 - TSS region transcription start site region 90733
Tssr90734 9 82975114 to 82975153 39 - TSS region transcription start site region 90734
Tssr90735 9 82975379 to 82975396 17 - TSS region transcription start site region 90735
Tssr90736 9 82975407 to 82975466 59 - TSS region transcription start site region 90736
Tssr90737 9 82975475 to 82975493 18 - TSS region transcription start site region 90737
Tssr90738 9 82975695 to 82975732 37 - TSS region transcription start site region 90738
Tssr86345 9 82976171 to 82976175 4 + TSS region transcription start site region 86345
Tssr2951 9 82985910 to 82985911 1 + TSS region transcription start site region 2951
Tssr86346 9 83008594 to 83008624 30 + TSS region transcription start site region 86346
Gm39383 9 83008603 to 83042603 34000 + lincRNA gene predicted gene, 39383
Tssr86347 9 83014855 to 83014864 9 + TSS region transcription start site region 86347
Tssr90739 9 83023987 to 83024007 20 - TSS region transcription start site region 90739
Gm35746 9 83068100 to 83072769 4669 - lncRNA gene predicted gene, 35746
Gm27248 9 83073223 to 83073388 165 - pseudogene predicted gene 27248
2810410P21Rik 9 83085969 to 83087996 2027 unclassified gene RIKEN cDNA 2810410P21 gene
Gm38398 9 83098224 to 83106330 8106 + lincRNA gene predicted gene, 38398
Tssr86348 9 83100655 to 83100677 22 + TSS region transcription start site region 86348
Hmgn3 9 83109948 to 83146685 36737 - protein coding gene high mobility group nucleosomal binding domain 3
Tssr90740 9 83112572 to 83112594 22 - TSS region transcription start site region 90740
Tssr86349 9 83112582 to 83112593 11 + TSS region transcription start site region 86349
Tssr90741 9 83112595 to 83112618 23 - TSS region transcription start site region 90741
Gm2065 9 83114108 to 83116864 2756 + lncRNA gene predicted gene 2065
D9Dcr21 9 83121465 to 83121560 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 21
Tssr90742 9 83141179 to 83141185 6 - TSS region transcription start site region 90742
Cpgi22091 9 83145670 to 83146809 1139 CpG island CpG island 22091
Gm29054 9 83145915 to 83147364 1449 + unclassified non-coding RNA gene predicted gene 29054
Tssr90743 9 83146501 to 83146506 5 - TSS region transcription start site region 90743
Tssr90744 9 83146528 to 83146588 60 - TSS region transcription start site region 90744
Tssr90745 9 83146601 to 83146614 13 - TSS region transcription start site region 90745
Gm38279 9 83174647 to 83175777 1130 - unclassified gene predicted gene, 38279
D9Mit307 9 83207024 to 83207122 98 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 307
Lith5 9 83207024 to 83207122 98 QTL lithogenic gene 5
Gm27216 9 83240481 to 83254540 14059 - lincRNA gene predicted gene 27216
Tssr90746 9 83250125 to 83250132 7 - TSS region transcription start site region 90746
Tssr90747 9 83250221 to 83250238 17 - TSS region transcription start site region 90747
Tssr90748 9 83254440 to 83254455 15 - TSS region transcription start site region 90748
Tssr90749 9 83254460 to 83254519 59 - TSS region transcription start site region 90749
Tssr2952 9 83254533 to 83254540 7 - TSS region transcription start site region 2952
D9Mit265 9 83315456 to 83315599 143 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 265
Gm46122 9 83316276 to 83328800 12524 + lncRNA gene predicted gene, 46122
Gm40536 9 83345038 to 83349706 4668 - lncRNA gene predicted gene, 40536
Gm46123 9 83351769 to 83353979 2210 + lincRNA gene predicted gene, 46123
Lca5 9 83391355 to 83441737 50382 - protein coding gene Leber congenital amaurosis 5 (human)
Tssr86350 9 83409619 to 83409621 2 + TSS region transcription start site region 86350
Rps27a-ps2 9 83409660 to 83410126 466 + pseudogene ribosomal protein S27A, pseudogene 2
Tssr86351 9 83431523 to 83431530 7 + TSS region transcription start site region 86351
Gm2087 9 83431547 to 83454573 23026 + antisense lncRNA gene predicted gene 2087
Tssr90750 9 83434608 to 83434614 6 - TSS region transcription start site region 90750
Cpgi22092 9 83440818 to 83441388 570 CpG island CpG island 22092
Tssr90751 9 83441065 to 83441110 45 - TSS region transcription start site region 90751
Gm37307 9 83447559 to 83450179 2620 + unclassified gene predicted gene, 37307
Cpgi22093 9 83447780 to 83448197 417 CpG island CpG island 22093
Tssr90752 9 83447957 to 83447975 18 - TSS region transcription start site region 90752
Gm28552 9 83480032 to 83480419 387 + pseudogene predicted gene 28552
Gm28477 9 83497666 to 83498071 405 + pseudogene predicted gene 28477
Cpgi22094 9 83547891 to 83548749 858 CpG island CpG island 22094
Tssr86352 9 83548279 to 83548298 19 + TSS region transcription start site region 86352
Tssr86353 9 83548309 to 83548334 25 + TSS region transcription start site region 86353
Sh3bgrl2 9 83548338 to 83600292 51954 + protein coding gene SH3 domain binding glutamic acid-rich protein like 2
Tssr86354 9 83548342 to 83548357 15 + TSS region transcription start site region 86354
Gm39384 9 83571560 to 83573289 1729 - lincRNA gene predicted gene, 39384
Tssr90753 9 83587242 to 83587259 17 - TSS region transcription start site region 90753
Tssr86355 9 83587953 to 83587968 15 + TSS region transcription start site region 86355
Tssr86356 9 83587974 to 83587987 13 + TSS region transcription start site region 86356
Tssr90754 9 83613944 to 83613948 4 - TSS region transcription start site region 90754
Tssr86357 9 83664963 to 83664966 3 + TSS region transcription start site region 86357
Gm36120 9 83679389 to 83681643 2254 - lincRNA gene predicted gene, 36120
Gm2109 9 83691475 to 83693223 1748 + lincRNA gene predicted gene 2109
Gm39385 9 83700481 to 83710981 10500 + lncRNA gene predicted gene, 39385
Gm39386 9 83726146 to 83728320 2174 + lncRNA gene predicted gene, 39386
Elovl4 9 83778692 to 83806277 27585 - protein coding gene elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4
Tssr90755 9 83779089 to 83779093 4 - TSS region transcription start site region 90755
Tssr90756 9 83805342 to 83805343 1 - TSS region transcription start site region 90756
Cpgi22095 9 83805355 to 83806705 1350 CpG island CpG island 22095
Tssr90757 9 83806159 to 83806170 11 - TSS region transcription start site region 90757
Tssr90758 9 83806187 to 83806194 7 - TSS region transcription start site region 90758
Tssr90759 9 83806241 to 83806260 19 - TSS region transcription start site region 90759
Tssr90760 9 83806264 to 83806281 17 - TSS region transcription start site region 90760
Cpgi22096 9 83834348 to 83835045 697 CpG island CpG island 22096
Tssr90761 9 83834543 to 83834566 23 - TSS region transcription start site region 90761
Tssr86358 9 83834645 to 83834668 23 + TSS region transcription start site region 86358
Tssr86359 9 83834684 to 83834736 52 + TSS region transcription start site region 86359
Ttk 9 83834689 to 83872389 37700 + protein coding gene Ttk protein kinase
Tssr86360 9 83843132 to 83843143 11 + TSS region transcription start site region 86360
Tssr86361 9 83866561 to 83866570 9 + TSS region transcription start site region 86361
Gm39387 9 83880883 to 83897223 16340 - lncRNA gene predicted gene, 39387
Gm36278 9 83921821 to 83925005 3184 - lincRNA gene predicted gene, 36278
Cpgi22097 9 83924867 to 83925562 695 CpG island CpG island 22097
Tssr86362 9 83925118 to 83925175 57 + TSS region transcription start site region 86362
Bckdhb 9 83925145 to 84124240 199095 + protein coding gene branched chain ketoacid dehydrogenase E1, beta polypeptide
Tssr86363 9 83925183 to 83925194 11 + TSS region transcription start site region 86363
Gm29163 9 83938369 to 83938475 106 - snRNA gene predicted gene 29163
Tssr86364 9 83938463 to 83938467 4 + TSS region transcription start site region 86364
Tssr86365 9 83939068 to 83939083 15 + TSS region transcription start site region 86365
Tssr86366 9 83939124 to 83939137 13 + TSS region transcription start site region 86366
Gm29164 9 83965984 to 83967007 1023 - pseudogene predicted gene 29164
Tssr86367 9 84002999 to 84003002 3 + TSS region transcription start site region 86367
Tssr86368 9 84007492 to 84007495 3 + TSS region transcription start site region 86368
Gm46124 9 84009139 to 84024817 15678 - antisense lncRNA gene predicted gene, 46124
Tssr86369 9 84037823 to 84037842 19 + TSS region transcription start site region 86369
Tssr86370 9 84037845 to 84037863 18 + TSS region transcription start site region 86370
Tssr86371 9 84041315 to 84041319 4 + TSS region transcription start site region 86371
Tssr86372 9 84045887 to 84045894 7 + TSS region transcription start site region 86372
Tssr86373 9 84049350 to 84049363 13 + TSS region transcription start site region 86373
Tssr86374 9 84053172 to 84053173 1 + TSS region transcription start site region 86374
D9Mit133 9 84091180 to 84091306 126 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 133
Tssr86375 9 84104228 to 84104233 5 + TSS region transcription start site region 86375