Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:80286930-82990156

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
In(9Bmp5-Myo6)5Rl 9 75775364 to 80311729 4536365 chromosomal inversion inversion, Chr 9, Russell 5
Myo6 9 80165031 to 80311729 146698 + protein coding gene myosin VI
Tssr2949 9 80288108 to 80288133 25 + TSS region transcription start site region 2949
Tssr86329 9 80305745 to 80305756 11 + TSS region transcription start site region 86329
Tssr86330 9 80305765 to 80305776 11 + TSS region transcription start site region 86330
Tssr86331 9 80306957 to 80306972 15 + TSS region transcription start site region 86331
Tssr86332 9 80308194 to 80308197 3 + TSS region transcription start site region 86332
Tssr86333 9 80310716 to 80310720 4 + TSS region transcription start site region 86333
Impg1 9 80313330 to 80465481 152151 - protein coding gene interphotoreceptor matrix proteoglycan 1
Tssr90716 9 80344777 to 80344779 2 - TSS region transcription start site region 90716
Tssr86334 9 80399483 to 80399524 41 + TSS region transcription start site region 86334
Gm18292 9 80451248 to 80452166 918 + pseudogene predicted gene, 18292
D9Mit343 9 80463139 to 80463256 117 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 343
Tssr90717 9 80465429 to 80465445 16 - TSS region transcription start site region 90717
D9Dcr16 9 80510033 to 80510128 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 16
Gm48387 9 80544763 to 80601097 56334 - lincRNA gene predicted gene, 48387
D9Dcr17 9 80551800 to 80551895 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 17
Tssr86335 9 80681901 to 80681913 12 + TSS region transcription start site region 86335
Tssr2950 9 80696364 to 80696367 3 + TSS region transcription start site region 2950
Gm39380 9 80709995 to 80713723 3728 + lincRNA gene predicted gene, 39380
Gm27224 9 80802651 to 80864861 62210 + lincRNA gene predicted gene 27224
Gm27225 9 80926034 to 80927213 1179 - pseudogene predicted gene 27225
Gm26713 9 80955436 to 81203591 248155 + lincRNA gene predicted gene, 26713
Gm35397 9 80964215 to 80966464 2249 - lncRNA gene predicted gene, 35397
Gm39381 9 80970328 to 80993714 23386 - lncRNA gene predicted gene, 39381
Gm8151 9 81016098 to 81016946 848 - pseudogene predicted gene 8151
Tssr86336 9 81264621 to 81264622 1 + TSS region transcription start site region 86336
Gm27226 9 81455397 to 81460966 5569 + lincRNA gene predicted gene 27226
2310076G05Rik 9 81628296 to 81630796 2500 unclassified gene RIKEN cDNA 2310076G05 gene
Htr1b 9 81631392 to 81632552 1160 - protein coding gene 5-hydroxytryptamine (serotonin) receptor 1B
Cpgi22087 9 81631642 to 81633893 2251 CpG island CpG island 22087
Tssr86337 9 81631929 to 81631948 19 + TSS region transcription start site region 86337
D430036J16Rik 9 81631930 to 81645156 13226 + antisense lncRNA gene RIKEN cDNA D430036J16 gene
Tssr90718 9 81632279 to 81632293 14 - TSS region transcription start site region 90718
Tssr86338 9 81632336 to 81632361 25 + TSS region transcription start site region 86338
Tssr86339 9 81632362 to 81632442 80 + TSS region transcription start site region 86339
Tssr90719 9 81633442 to 81633447 5 - TSS region transcription start site region 90719
Tssr90720 9 81633512 to 81633564 52 - TSS region transcription start site region 90720
Tssr90721 9 81633770 to 81633787 17 - TSS region transcription start site region 90721
Tssr90722 9 81633806 to 81633839 33 - TSS region transcription start site region 90722
Tssr90723 9 81633843 to 81633849 6 - TSS region transcription start site region 90723
Gm9531 9 81677598 to 81678677 1079 + pseudogene predicted gene 9531
D9Dcr18 9 81691872 to 81691970 98 DNA segment DNA segment, Chr 9, Derry C. Roopenian 18
Gm26907 9 81776695 to 81858891 82196 - antisense lncRNA gene predicted gene, 26907
Cpgi22088 9 81863508 to 81864105 597 CpG island CpG island 22088
Mei4 9 81863670 to 82206007 342337 + protein coding gene meiotic double-stranded break formation protein 4
Tssr86340 9 81863781 to 81863842 61 + TSS region transcription start site region 86340
Gm37837 9 82028580 to 82029183 603 + unclassified gene predicted gene, 37837
Gm19228 9 82196485 to 82197195 710 - pseudogene predicted gene, 19228
Gm15896 9 82202648 to 82203398 750 + pseudogene predicted gene 15896
Gm23748 9 82247848 to 82247978 130 + snoRNA gene predicted gene, 23748
Gm35548 9 82249931 to 82260208 10277 - lincRNA gene predicted gene, 35548
1700063H06Rik 9 82260293 to 82263485 3192 + lincRNA gene RIKEN cDNA 1700063H06 gene
Gm22836 9 82439414 to 82439474 60 - snRNA gene predicted gene, 22836
Gm24393 9 82463356 to 82463452 96 - snRNA gene predicted gene, 24393
Gm27249 9 82524991 to 82525318 327 + pseudogene predicted gene 27249
D9Dcr19 9 82533497 to 82533600 103 DNA segment DNA segment, Chr 9, Derry C. Roopenian 19
Gm35690 9 82541508 to 82559701 18193 + lncRNA gene predicted gene, 35690
D9Mit237 9 82813466 to 82813606 140 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 237
Cpgi22089 9 82829539 to 82830681 1142 CpG island CpG island 22089
Irak1bp1 9 82829806 to 82847688 17882 + protein coding gene interleukin-1 receptor-associated kinase 1 binding protein 1
Tssr86341 9 82829818 to 82829834 16 + TSS region transcription start site region 86341
Tssr86342 9 82829931 to 82829942 11 + TSS region transcription start site region 86342
Tssr86343 9 82829967 to 82830076 109 + TSS region transcription start site region 86343
Tssr86344 9 82830441 to 82830476 35 + TSS region transcription start site region 86344
Gm38553 9 82853079 to 82865332 12253 + lncRNA gene predicted gene, 38553
Phip 9 82866159 to 82975516 109357 - protein coding gene pleckstrin homology domain interacting protein
Tssr90724 9 82900801 to 82900844 43 - TSS region transcription start site region 90724
Tssr90725 9 82903149 to 82903177 28 - TSS region transcription start site region 90725
Tssr90726 9 82908037 to 82908042 5 - TSS region transcription start site region 90726
Tssr90727 9 82908713 to 82908755 42 - TSS region transcription start site region 90727
Tssr90728 9 82928873 to 82928882 9 - TSS region transcription start site region 90728
Tssr90729 9 82938141 to 82938146 5 - TSS region transcription start site region 90729
D9Dcr20 9 82946667 to 82946770 103 DNA segment DNA segment, Chr 9, Derry C. Roopenian 20
Tssr90730 9 82951466 to 82951475 9 - TSS region transcription start site region 90730
Gm39382 9 82959858 to 82966042 6184 - lncRNA gene predicted gene, 39382
Tssr90731 9 82971862 to 82971866 4 - TSS region transcription start site region 90731
Cpgi22090 9 82974147 to 82976123 1976 CpG island CpG island 22090
Tssr90732 9 82974282 to 82974318 36 - TSS region transcription start site region 90732
Tssr90733 9 82974952 to 82974987 35 - TSS region transcription start site region 90733
Tssr90734 9 82975114 to 82975153 39 - TSS region transcription start site region 90734
Tssr90735 9 82975379 to 82975396 17 - TSS region transcription start site region 90735
Tssr90736 9 82975407 to 82975466 59 - TSS region transcription start site region 90736
Tssr90737 9 82975475 to 82975493 18 - TSS region transcription start site region 90737
Tssr90738 9 82975695 to 82975732 37 - TSS region transcription start site region 90738
Tssr86345 9 82976171 to 82976175 4 + TSS region transcription start site region 86345
Tssr2951 9 82985910 to 82985911 1 + TSS region transcription start site region 2951