Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:80090429-80840445

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ksc1 9 75501755 to 80091050 4589295 QTL keratinocyte stem cell locus 1
In(9Bmp5-Myo6)5Rl 9 75775364 to 80311729 4536365 chromosomal inversion inversion, Chr 9, Russell 5
Senp6 9 80066903 to 80144782 77879 + protein coding gene SUMO/sentrin specific peptidase 6
D9Mit236 9 80090911 to 80091050 139 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 236
Tssr86318 9 80111377 to 80111415 38 + TSS region transcription start site region 86318
Tssr86319 9 80112906 to 80112911 5 + TSS region transcription start site region 86319
Gm17477 9 80118895 to 80121937 3042 - antisense lncRNA gene predicted gene, 17477
Tssr86320 9 80126364 to 80126384 20 + TSS region transcription start site region 86320
Cpgi22086 9 80164389 to 80165418 1029 CpG island CpG island 22086
Tssr86321 9 80164995 to 80164998 3 + TSS region transcription start site region 86321
Tssr86322 9 80165002 to 80165010 8 + TSS region transcription start site region 86322
Tssr86323 9 80165013 to 80165055 42 + TSS region transcription start site region 86323
Myo6 9 80165031 to 80311729 146698 + protein coding gene myosin VI
Tssr86324 9 80165061 to 80165076 15 + TSS region transcription start site region 86324
Tssr86325 9 80165079 to 80165086 7 + TSS region transcription start site region 86325
Gm27227 9 80263306 to 80265450 2144 - antisense lncRNA gene predicted gene 27227
Tssr90714 9 80265407 to 80265416 9 - TSS region transcription start site region 90714
Tssr90715 9 80265421 to 80265433 12 - TSS region transcription start site region 90715
Tssr86326 9 80274727 to 80274733 6 + TSS region transcription start site region 86326
Tssr86327 9 80281491 to 80281499 8 + TSS region transcription start site region 86327
Tssr86328 9 80286331 to 80286348 17 + TSS region transcription start site region 86328
Tssr2949 9 80288108 to 80288133 25 + TSS region transcription start site region 2949
Tssr86329 9 80305745 to 80305756 11 + TSS region transcription start site region 86329
Tssr86330 9 80305765 to 80305776 11 + TSS region transcription start site region 86330
Tssr86331 9 80306957 to 80306972 15 + TSS region transcription start site region 86331
Tssr86332 9 80308194 to 80308197 3 + TSS region transcription start site region 86332
Tssr86333 9 80310716 to 80310720 4 + TSS region transcription start site region 86333
Impg1 9 80313330 to 80465481 152151 - protein coding gene interphotoreceptor matrix proteoglycan 1
Tssr90716 9 80344777 to 80344779 2 - TSS region transcription start site region 90716
Tssr86334 9 80399483 to 80399524 41 + TSS region transcription start site region 86334
Gm18292 9 80451248 to 80452166 918 + pseudogene predicted gene, 18292
D9Mit343 9 80463139 to 80463256 117 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 343
Tssr90717 9 80465429 to 80465445 16 - TSS region transcription start site region 90717
D9Dcr16 9 80510033 to 80510128 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 16
Gm48387 9 80544763 to 80601097 56334 - lincRNA gene predicted gene, 48387
D9Dcr17 9 80551800 to 80551895 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 17
Tssr86335 9 80681901 to 80681913 12 + TSS region transcription start site region 86335
Tssr2950 9 80696364 to 80696367 3 + TSS region transcription start site region 2950
Gm39380 9 80709995 to 80713723 3728 + lincRNA gene predicted gene, 39380
Gm27224 9 80802651 to 80864861 62210 + lincRNA gene predicted gene 27224