Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:79797838-80157861

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55 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ksc1 9 75501755 to 80091050 4589295 QTL keratinocyte stem cell locus 1
4930429F24Rik 9 79793641 to 79803235 9594 + lincRNA gene RIKEN cDNA 4930429F24 gene
Filip1 9 79805018 to 79977882 172864 - protein coding gene filamin A interacting protein 1
Tssr90691 9 79811152 to 79811158 6 - TSS region transcription start site region 90691
Cpgi22081 9 79817919 to 79818270 351 CpG island CpG island 22081
Cpgi22082 9 79818776 to 79818971 195 CpG island CpG island 22082
Tssr90692 9 79830964 to 79830981 17 - TSS region transcription start site region 90692
Tssr90693 9 79830998 to 79831017 19 - TSS region transcription start site region 90693
Tssr90694 9 79831022 to 79831034 12 - TSS region transcription start site region 90694
Gm20477 9 79838108 to 79838387 279 - pseudogene predicted gene 20477
Tssr90695 9 79860338 to 79860365 27 - TSS region transcription start site region 90695
Cpgi22083 9 79875515 to 79875675 160 CpG island CpG island 22083
Gm3211 9 79913200 to 79913631 431 + unclassified non-coding RNA gene predicted gene 3211
Gm35261 9 79927052 to 79935739 8687 + lncRNA gene predicted gene, 35261
Tssr90696 9 79961961 to 79961976 15 - TSS region transcription start site region 90696
Tssr90697 9 79961983 to 79962001 18 - TSS region transcription start site region 90697
Tssr90698 9 79962018 to 79962031 13 - TSS region transcription start site region 90698
Tssr90699 9 79962045 to 79962088 43 - TSS region transcription start site region 90699
Tssr90700 9 79977540 to 79977549 9 - TSS region transcription start site region 90700
Tssr90701 9 79977574 to 79977585 11 - TSS region transcription start site region 90701
Tssr90702 9 79977628 to 79977633 5 - TSS region transcription start site region 90702
Tssr90703 9 79977638 to 79977662 24 - TSS region transcription start site region 90703
Tssr90704 9 79977684 to 79977702 18 - TSS region transcription start site region 90704
Tssr90705 9 79977782 to 79977809 27 - TSS region transcription start site region 90705
Tssr90706 9 79977810 to 79977836 26 - TSS region transcription start site region 90706
Tssr90707 9 79977838 to 79977861 23 - TSS region transcription start site region 90707
Tssr90708 9 80004059 to 80004077 18 - TSS region transcription start site region 90708
Tssr86308 9 80004212 to 80004238 26 + TSS region transcription start site region 86308
Gm8131 9 80004327 to 80005449 1122 + pseudogene predicted gene 8131
Cpgi22084 9 80005167 to 80005396 229 CpG island CpG island 22084
Tssr90709 9 80012851 to 80012855 4 - TSS region transcription start site region 90709
Gm25433 9 80037429 to 80037714 285 + unclassified non-coding RNA gene predicted gene, 25433
Gm46146 9 80043871 to 80044216 345 - pseudogene predicted gene, 46146
Cpgi22085 9 80066607 to 80068247 1640 CpG island CpG island 22085
Tssr86309 9 80066753 to 80066764 11 + TSS region transcription start site region 86309
Tssr86310 9 80066895 to 80066936 41 + TSS region transcription start site region 86310
Senp6 9 80066903 to 80144782 77879 + protein coding gene SUMO/sentrin specific peptidase 6
Tssr86311 9 80066939 to 80066983 44 + TSS region transcription start site region 86311
Tssr86312 9 80066987 to 80067006 19 + TSS region transcription start site region 86312
Tssr86313 9 80067009 to 80067047 38 + TSS region transcription start site region 86313
Tssr86314 9 80067058 to 80067085 27 + TSS region transcription start site region 86314
Tssr86315 9 80067087 to 80067119 32 + TSS region transcription start site region 86315
Tssr86316 9 80067153 to 80067165 12 + TSS region transcription start site region 86316
Tssr90710 9 80067361 to 80067370 9 - TSS region transcription start site region 90710
Tssr86317 9 80067452 to 80067465 13 + TSS region transcription start site region 86317
Tssr90711 9 80067674 to 80067698 24 - TSS region transcription start site region 90711
Tssr90712 9 80067716 to 80067761 45 - TSS region transcription start site region 90712
Tssr90713 9 80067767 to 80067778 11 - TSS region transcription start site region 90713
Gm20648 9 80073429 to 80073756 327 - pseudogene predicted gene 20648
6720474J12Rik 9 80074206 to 80077626 3420 unclassified gene RIKEN cDNA 6720474J12 gene
D9Mit236 9 80090911 to 80091050 139 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 236
Tssr86318 9 80111377 to 80111415 38 + TSS region transcription start site region 86318
Tssr86319 9 80112906 to 80112911 5 + TSS region transcription start site region 86319
Gm17477 9 80118895 to 80121937 3042 - antisense lncRNA gene predicted gene, 17477
Tssr86320 9 80126364 to 80126384 20 + TSS region transcription start site region 86320