Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:79588290-79998372

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Col12a1 9 79598991 to 79718831 119840 - protein coding gene collagen, type XII, alpha 1
Tssr90663 9 79599154 to 79599157 3 - TSS region transcription start site region 90663
Tssr90664 9 79639772 to 79639778 6 - TSS region transcription start site region 90664
Tssr86304 9 79688771 to 79688811 40 + TSS region transcription start site region 86304
4930562D21Rik 9 79688776 to 79690907 2131 + antisense lncRNA gene RIKEN cDNA 4930562D21 gene
Tssr90665 9 79691337 to 79691341 4 - TSS region transcription start site region 90665
Tssr90666 9 79698729 to 79698730 1 - TSS region transcription start site region 90666
Cpgi22076 9 79700295 to 79700452 157 CpG island CpG island 22076
Cpgi22077 9 79718297 to 79719204 907 CpG island CpG island 22077
Tssr90667 9 79718569 to 79718572 3 - TSS region transcription start site region 90667
Tssr90668 9 79718587 to 79718592 5 - TSS region transcription start site region 90668
Tssr90669 9 79718612 to 79718620 8 - TSS region transcription start site region 90669
Tssr90670 9 79718631 to 79718648 17 - TSS region transcription start site region 90670
Tssr90671 9 79718741 to 79718752 11 - TSS region transcription start site region 90671
Tssr90672 9 79718756 to 79718763 7 - TSS region transcription start site region 90672
Tssr90673 9 79718765 to 79718777 12 - TSS region transcription start site region 90673
Tssr90674 9 79718791 to 79718801 10 - TSS region transcription start site region 90674
Tssr90675 9 79718803 to 79718818 15 - TSS region transcription start site region 90675
Tssr90676 9 79718835 to 79718842 7 - TSS region transcription start site region 90676
Cpgi22078 9 79719500 to 79720015 515 CpG island CpG island 22078
Gm39378 9 79740310 to 79745742 5432 - lncRNA gene predicted gene, 39378
Cox7a2 9 79755361 to 79759878 4517 - protein coding gene cytochrome c oxidase subunit 7A2
Tssr86305 9 79755404 to 79755424 20 + TSS region transcription start site region 86305
Tssr90677 9 79758367 to 79758372 5 - TSS region transcription start site region 90677
Cpgi22079 9 79759349 to 79760181 832 CpG island CpG island 22079
Tssr90678 9 79759467 to 79759492 25 - TSS region transcription start site region 90678
Tssr90679 9 79759677 to 79759745 68 - TSS region transcription start site region 90679
Tssr90680 9 79759755 to 79759772 17 - TSS region transcription start site region 90680
Tssr90681 9 79759849 to 79759856 7 - TSS region transcription start site region 90681
Tssr90682 9 79759858 to 79759861 3 - TSS region transcription start site region 90682
Tssr90683 9 79759867 to 79759880 13 - TSS region transcription start site region 90683
Gm46121 9 79760276 to 79767544 7268 - lncRNA gene predicted gene, 46121
Tmem30a 9 79768941 to 79793430 24489 - protein coding gene transmembrane protein 30A
Tssr90684 9 79770387 to 79770428 41 - TSS region transcription start site region 90684
Cpgi22080 9 79792767 to 79793787 1020 CpG island CpG island 22080
Tssr90685 9 79792850 to 79792883 33 - TSS region transcription start site region 90685
Tssr86306 9 79792953 to 79792995 42 + TSS region transcription start site region 86306
Tssr90686 9 79793290 to 79793372 82 - TSS region transcription start site region 90686
Tssr90687 9 79793378 to 79793409 31 - TSS region transcription start site region 90687
Tssr90688 9 79793508 to 79793519 11 - TSS region transcription start site region 90688
Tssr90689 9 79793521 to 79793541 20 - TSS region transcription start site region 90689
Tssr90690 9 79793545 to 79793571 26 - TSS region transcription start site region 90690
Tssr86307 9 79793627 to 79793670 43 + TSS region transcription start site region 86307
4930429F24Rik 9 79793641 to 79803235 9594 + lincRNA gene RIKEN cDNA 4930429F24 gene
Filip1 9 79805018 to 79977882 172864 - protein coding gene filamin A interacting protein 1
Tssr90691 9 79811152 to 79811158 6 - TSS region transcription start site region 90691
Cpgi22081 9 79817919 to 79818270 351 CpG island CpG island 22081
Cpgi22082 9 79818776 to 79818971 195 CpG island CpG island 22082
Tssr90692 9 79830964 to 79830981 17 - TSS region transcription start site region 90692
Tssr90693 9 79830998 to 79831017 19 - TSS region transcription start site region 90693
Tssr90694 9 79831022 to 79831034 12 - TSS region transcription start site region 90694
Gm20477 9 79838108 to 79838387 279 - pseudogene predicted gene 20477
Tssr90695 9 79860338 to 79860365 27 - TSS region transcription start site region 90695
Cpgi22083 9 79875515 to 79875675 160 CpG island CpG island 22083
Gm3211 9 79913200 to 79913631 431 + unclassified non-coding RNA gene predicted gene 3211
Gm35261 9 79927052 to 79935739 8687 + lncRNA gene predicted gene, 35261
Tssr90696 9 79961961 to 79961976 15 - TSS region transcription start site region 90696
Tssr90697 9 79961983 to 79962001 18 - TSS region transcription start site region 90697
Tssr90698 9 79962018 to 79962031 13 - TSS region transcription start site region 90698
Tssr90699 9 79962045 to 79962088 43 - TSS region transcription start site region 90699
Tssr90700 9 79977540 to 79977549 9 - TSS region transcription start site region 90700
Tssr90701 9 79977574 to 79977585 11 - TSS region transcription start site region 90701
Tssr90702 9 79977628 to 79977633 5 - TSS region transcription start site region 90702
Tssr90703 9 79977638 to 79977662 24 - TSS region transcription start site region 90703
Tssr90704 9 79977684 to 79977702 18 - TSS region transcription start site region 90704
Tssr90705 9 79977782 to 79977809 27 - TSS region transcription start site region 90705
Tssr90706 9 79977810 to 79977836 26 - TSS region transcription start site region 90706
Tssr90707 9 79977838 to 79977861 23 - TSS region transcription start site region 90707