Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:78881774-79812523

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm47498 9 78936559 to 78936783 224 - pseudogene predicted gene, 47498
Tssr90662 9 78937070 to 78937072 2 - TSS region transcription start site region 90662
Gm18863 9 78942338 to 78943636 1298 - pseudogene predicted gene, 18863
Gm35024 9 79027032 to 79029744 2712 - lincRNA gene predicted gene, 35024
D9Mit268 9 79126590 to 79126704 114 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 268
D9Mit268.2 9 79126712 to 79126823 111 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 268.2
Gm47499 9 79159621 to 79202007 42386 - lincRNA gene predicted gene, 47499
Gm47501 9 79215121 to 79267651 52530 - lincRNA gene predicted gene, 47501
Gm28620 9 79238620 to 79239058 438 + lincRNA gene predicted gene 28620
D9Nds2 9 79242485 to 79242599 114 DNA segment DNA segment, Chr 9, Nuffield Department of Surgery 2
Lrnx3 9 79242485 to 79242599 114 QTL learning contextual 3
Gm47500 9 79263892 to 79264275 383 + pseudogene predicted gene, 47500
Cpgi22075 9 79342149 to 79342921 772 CpG island CpG island 22075
Gm49264 9 79342236 to 79342940 704 - pseudogene predicted gene, 49264
Aldoa-ps3 9 79346321 to 79346626 305 - pseudogene aldolase A, pseudogene 3
Aldoa-ps4 9 79346774 to 79347523 749 + pseudogene aldolase A, pseudogene 4
Gm39377 9 79378119 to 79390855 12736 - lincRNA gene predicted gene, 39377
Gm35262 9 79395203 to 79395469 266 - pseudogene predicted gene, 35262
Gm10635 9 79444037 to 79519302 75265 - lincRNA gene predicted gene 10635
Gm8125 9 79573808 to 79574545 737 + pseudogene predicted gene 8125
Col12a1 9 79598991 to 79718831 119840 - protein coding gene collagen, type XII, alpha 1
Tssr90663 9 79599154 to 79599157 3 - TSS region transcription start site region 90663
Tssr90664 9 79639772 to 79639778 6 - TSS region transcription start site region 90664
Tssr86304 9 79688771 to 79688811 40 + TSS region transcription start site region 86304
4930562D21Rik 9 79688776 to 79690907 2131 + antisense lncRNA gene RIKEN cDNA 4930562D21 gene
Tssr90665 9 79691337 to 79691341 4 - TSS region transcription start site region 90665
Tssr90666 9 79698729 to 79698730 1 - TSS region transcription start site region 90666
Cpgi22076 9 79700295 to 79700452 157 CpG island CpG island 22076
Cpgi22077 9 79718297 to 79719204 907 CpG island CpG island 22077
Tssr90667 9 79718569 to 79718572 3 - TSS region transcription start site region 90667
Tssr90668 9 79718587 to 79718592 5 - TSS region transcription start site region 90668
Tssr90669 9 79718612 to 79718620 8 - TSS region transcription start site region 90669
Tssr90670 9 79718631 to 79718648 17 - TSS region transcription start site region 90670
Tssr90671 9 79718741 to 79718752 11 - TSS region transcription start site region 90671
Tssr90672 9 79718756 to 79718763 7 - TSS region transcription start site region 90672
Tssr90673 9 79718765 to 79718777 12 - TSS region transcription start site region 90673
Tssr90674 9 79718791 to 79718801 10 - TSS region transcription start site region 90674
Tssr90675 9 79718803 to 79718818 15 - TSS region transcription start site region 90675
Tssr90676 9 79718835 to 79718842 7 - TSS region transcription start site region 90676
Cpgi22078 9 79719500 to 79720015 515 CpG island CpG island 22078
Gm39378 9 79740310 to 79745742 5432 - lncRNA gene predicted gene, 39378
Cox7a2 9 79755361 to 79759878 4517 - protein coding gene cytochrome c oxidase subunit 7A2
Tssr86305 9 79755404 to 79755424 20 + TSS region transcription start site region 86305
Tssr90677 9 79758367 to 79758372 5 - TSS region transcription start site region 90677
Cpgi22079 9 79759349 to 79760181 832 CpG island CpG island 22079
Tssr90678 9 79759467 to 79759492 25 - TSS region transcription start site region 90678
Tssr90679 9 79759677 to 79759745 68 - TSS region transcription start site region 90679
Tssr90680 9 79759755 to 79759772 17 - TSS region transcription start site region 90680
Tssr90681 9 79759849 to 79759856 7 - TSS region transcription start site region 90681
Tssr90682 9 79759858 to 79759861 3 - TSS region transcription start site region 90682
Tssr90683 9 79759867 to 79759880 13 - TSS region transcription start site region 90683
Gm46121 9 79760276 to 79767544 7268 - lncRNA gene predicted gene, 46121
Tmem30a 9 79768941 to 79793430 24489 - protein coding gene transmembrane protein 30A
Tssr90684 9 79770387 to 79770428 41 - TSS region transcription start site region 90684
Cpgi22080 9 79792767 to 79793787 1020 CpG island CpG island 22080
Tssr90685 9 79792850 to 79792883 33 - TSS region transcription start site region 90685
Tssr86306 9 79792953 to 79792995 42 + TSS region transcription start site region 86306
Tssr90686 9 79793290 to 79793372 82 - TSS region transcription start site region 90686
Tssr90687 9 79793378 to 79793409 31 - TSS region transcription start site region 90687
Tssr90688 9 79793508 to 79793519 11 - TSS region transcription start site region 90688
Tssr90689 9 79793521 to 79793541 20 - TSS region transcription start site region 90689
Tssr90690 9 79793545 to 79793571 26 - TSS region transcription start site region 90690
Tssr86307 9 79793627 to 79793670 43 + TSS region transcription start site region 86307
4930429F24Rik 9 79793641 to 79803235 9594 + lincRNA gene RIKEN cDNA 4930429F24 gene
Filip1 9 79805018 to 79977882 172864 - protein coding gene filamin A interacting protein 1
Tssr90691 9 79811152 to 79811158 6 - TSS region transcription start site region 90691