Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:7869019-10609042

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110 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Birc3 9 7848699 to 7873186 24487 - protein coding gene baculoviral IAP repeat-containing 3
Tssr83769 9 7869762 to 7869765 3 + TSS region transcription start site region 83769
Tssr83770 9 7870429 to 7870432 3 + TSS region transcription start site region 83770
Tssr83771 9 7870721 to 7870735 14 + TSS region transcription start site region 83771
Tssr83772 9 7870748 to 7870758 10 + TSS region transcription start site region 83772
Tssr83773 9 7870959 to 7870989 30 + TSS region transcription start site region 83773
Tssr88100 9 7871825 to 7871843 18 - TSS region transcription start site region 88100
Tssr83774 9 7871936 to 7871947 11 + TSS region transcription start site region 83774
Tssr83775 9 7871976 to 7871987 11 + TSS region transcription start site region 83775
Tssr83776 9 7871994 to 7872010 16 + TSS region transcription start site region 83776
Tssr88101 9 7872584 to 7872603 19 - TSS region transcription start site region 88101
Cpgi21343 9 7872671 to 7873022 351 CpG island CpG island 21343
Tssr88102 9 7872775 to 7872788 13 - TSS region transcription start site region 88102
Tssr88103 9 7872814 to 7872876 62 - TSS region transcription start site region 88103
Tssr88104 9 7872886 to 7872909 23 - TSS region transcription start site region 88104
Tssr88105 9 7872917 to 7872935 18 - TSS region transcription start site region 88105
Tssr83777 9 7872951 to 7872976 25 + TSS region transcription start site region 83777
Tssr88106 9 7872951 to 7872958 7 - TSS region transcription start site region 88106
Tssr88107 9 7872971 to 7872978 7 - TSS region transcription start site region 88107
Tssr88108 9 7872985 to 7873009 24 - TSS region transcription start site region 88108
Tssr88109 9 7873016 to 7873046 30 - TSS region transcription start site region 88109
Tssr83778 9 7873124 to 7873141 17 + TSS region transcription start site region 83778
Tssr83779 9 7873145 to 7873169 24 + TSS region transcription start site region 83779
Tssr88110 9 7873157 to 7873192 35 - TSS region transcription start site region 88110
Tssr83780 9 7873172 to 7873186 14 + TSS region transcription start site region 83780
Tssr83781 9 7873196 to 7873213 17 + TSS region transcription start site region 83781
Tssr83782 9 7873272 to 7873277 5 + TSS region transcription start site region 83782
Yap1 9 7931999 to 8004596 72597 - protein coding gene yes-associated protein 1
Tssr88111 9 7965811 to 7965820 9 - TSS region transcription start site region 88111
Gm20416 9 7965838 to 7977004 11166 + unclassified non-coding RNA gene predicted gene 20416
Tssr88112 9 7984115 to 7984121 6 - TSS region transcription start site region 88112
Tssr88113 9 7994815 to 7994819 4 - TSS region transcription start site region 88113
Cpgi21344 9 8003359 to 8005192 1833 CpG island CpG island 21344
Tssr88114 9 8004414 to 8004436 22 - TSS region transcription start site region 88114
Tssr88115 9 8004559 to 8004577 18 - TSS region transcription start site region 88115
Tssr88116 9 8004585 to 8004623 38 - TSS region transcription start site region 88116
Tssr88117 9 8004635 to 8004644 9 - TSS region transcription start site region 88117
Gm45494 9 8004830 to 8009269 4439 + bidirectional promoter lncRNA gene predicted gene 45494
Cfap300 9 8021672 to 8042823 21151 - protein coding gene cilia and flagella associated protein 300
Cpgi21345 9 8042432 to 8042913 481 CpG island CpG island 21345
Tssr88118 9 8042785 to 8042882 97 - TSS region transcription start site region 88118
Cep126 9 8076461 to 8134294 57833 - protein coding gene centrosomal protein 126
Tssr83783 9 8095701 to 8095703 2 + TSS region transcription start site region 83783
Gm2461 9 8104564 to 8106612 2048 protein coding gene predicted gene 2461
Cpgi21346 9 8133736 to 8134762 1026 CpG island CpG island 21346
Tssr88119 9 8134351 to 8134364 13 - TSS region transcription start site region 88119
Tssr88120 9 8134428 to 8134480 52 - TSS region transcription start site region 88120
Tssr83784 9 8134580 to 8134591 11 + TSS region transcription start site region 83784
Gm19324 9 8142541 to 8181112 38571 + pseudogene predicted gene, 19324
Gm7495 9 8153761 to 8154186 425 - pseudogene predicted gene 7495
1700128F08Rik 9 8221889 to 8241987 20098 + pseudogene RIKEN cDNA 1700128F08 gene
Mir1899 9 8246786 to 8246881 95 + miRNA gene microRNA 1899
D9Mit250 9 8393623 to 8393745 122 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 250
Gm47517 9 8476273 to 8476487 214 + pseudogene predicted gene, 47517
Cpgi21347 9 8543958 to 8544803 845 CpG island CpG island 21347
Trpc6 9 8544142 to 8680741 136599 + protein coding gene transient receptor potential cation channel, subfamily C, member 6
Tssr83785 9 8544199 to 8544225 26 + TSS region transcription start site region 83785
Tssr83786 9 8544227 to 8544258 31 + TSS region transcription start site region 83786
Tssr83787 9 8544500 to 8544532 32 + TSS region transcription start site region 83787
Gm10708 9 8555222 to 8555448 226 protein coding gene predicted gene 10708
Gm32014 9 8644078 to 8740988 96910 - lincRNA gene predicted gene, 32014
Tssr88121 9 8693288 to 8693308 20 - TSS region transcription start site region 88121
D9Mit217 9 8751397 to 8751633 236 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 217
Tssr88122 9 8752254 to 8752260 6 - TSS region transcription start site region 88122
Tssr83788 9 8859329 to 8859332 3 + TSS region transcription start site region 83788
Tssr83789 9 8899828 to 8899855 27 + TSS region transcription start site region 83789
Pgr 9 8899833 to 8968611 68778 + protein coding gene progesterone receptor
Cpgi21348 9 8900152 to 8902198 2046 CpG island CpG island 21348
Tssr83790 9 8900409 to 8900425 16 + TSS region transcription start site region 83790
Tssr83791 9 8900459 to 8900489 30 + TSS region transcription start site region 83791
Tssr83792 9 8900490 to 8900502 12 + TSS region transcription start site region 83792
Tssr83793 9 8900563 to 8900574 11 + TSS region transcription start site region 83793
Tssr83794 9 8901535 to 8901549 14 + TSS region transcription start site region 83794
Tssr83795 9 8901699 to 8901784 85 + TSS region transcription start site region 83795
Gm16485 9 8971791 to 8975773 3982 + protein coding gene predicted gene 16485
Arhgap42 9 8994329 to 9239101 244772 - protein coding gene Rho GTPase activating protein 42
D9Mit218 9 9025264 to 9025387 123 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 218
D9Mit249 9 9107561 to 9107685 124 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 249
Mdq19 9 9141014 to 9141014 0 QTL mammary ductal QTL 19
Tssr88123 9 9142423 to 9142427 4 - TSS region transcription start site region 88123
Tssr88124 9 9227503 to 9227507 4 - TSS region transcription start site region 88124
Gm16833 9 9236288 to 9260883 24595 + antisense lncRNA gene predicted gene, 16833
Cpgi21349 9 9238483 to 9239490 1007 CpG island CpG island 21349
Tssr88125 9 9238950 to 9238964 14 - TSS region transcription start site region 88125
Tssr88126 9 9238989 to 9239001 12 - TSS region transcription start site region 88126
Tssr88127 9 9239019 to 9239042 23 - TSS region transcription start site region 88127
Tssr88128 9 9239052 to 9239095 43 - TSS region transcription start site region 88128
Tssr88129 9 9239107 to 9239124 17 - TSS region transcription start site region 88129
Tssr88130 9 9269358 to 9269396 38 - TSS region transcription start site region 88130
Gm22815 9 9301391 to 9301452 61 + snRNA gene predicted gene, 22815
Gm47333 9 9434592 to 9434893 301 + pseudogene predicted gene, 47333
Tssr83796 9 9434628 to 9434653 25 + TSS region transcription start site region 83796
Gm47334 9 9564087 to 9583564 19477 + lincRNA gene predicted gene, 47334
Gm46102 9 9579337 to 9619784 40447 - lincRNA gene predicted gene, 46102
Gm26195 9 9670941 to 9671041 100 - miRNA gene predicted gene, 26195
D9Mit1011 9 9777414 to 9777526 112 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1011
D9Mit1010 9 9777520 to 9777668 148 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1010
Mir6237 9 9894431 to 9894521 90 + miRNA gene microRNA 6237
D9Dcr136 9 10009317 to 10009416 99 DNA segment DNA Segment, Chr 9, Derry C. Roopenian 136
D9Mit43 9 10079318 to 10079449 131 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 43
Gm39289 9 10080457 to 10092882 12425 + lncRNA gene predicted gene, 39289
Tssr83797 9 10080484 to 10080527 43 + TSS region transcription start site region 83797
Gm24496 9 10290478 to 10290587 109 - miRNA gene predicted gene, 24496
Gm25086 9 10295047 to 10295156 109 - miRNA gene predicted gene, 25086
D9Mit251 9 10324074 to 10324198 124 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 251
Tssr88131 9 10412300 to 10412303 3 - TSS region transcription start site region 88131
Tssr83798 9 10446538 to 10446552 14 + TSS region transcription start site region 83798
Gm46103 9 10475935 to 10476275 340 + pseudogene predicted gene, 46103
Cntn5 9 10904775 to 9660891 -1243884 - protein coding gene contactin 5
Sles4 9 37395074 to 9107561 -28287513 QTL systemic lupus erythmatosus suppressor 4