Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:78540638-79101838

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc17a5 9 78536488 to 78588041 51553 - protein coding gene solute carrier family 17 (anion/sugar transporter), member 5
Tssr90653 9 78583231 to 78583249 18 - TSS region transcription start site region 90653
Tssr90654 9 78585076 to 78585087 11 - TSS region transcription start site region 90654
Tssr90655 9 78585113 to 78585124 11 - TSS region transcription start site region 90655
Tssr90656 9 78585125 to 78585135 10 - TSS region transcription start site region 90656
Tssr90657 9 78585149 to 78585173 24 - TSS region transcription start site region 90657
Cpgi22072 9 78587487 to 78588273 786 CpG island CpG island 22072
Tssr90658 9 78587968 to 78588047 79 - TSS region transcription start site region 90658
Tssr86295 9 78615452 to 78615474 22 + TSS region transcription start site region 86295
Tssr86296 9 78615482 to 78615493 11 + TSS region transcription start site region 86296
Cpgi22073 9 78615495 to 78616084 589 CpG island CpG island 22073
Tssr86297 9 78615501 to 78615509 8 + TSS region transcription start site region 86297
Cd109 9 78615546 to 78716253 100707 + protein coding gene CD109 antigen
Tssr90659 9 78615645 to 78615657 12 - TSS region transcription start site region 90659
Tssr86298 9 78615738 to 78615743 5 + TSS region transcription start site region 86298
Tssr86299 9 78615757 to 78615786 29 + TSS region transcription start site region 86299
Tssr86300 9 78615804 to 78615809 5 + TSS region transcription start site region 86300
Tssr86301 9 78615821 to 78615832 11 + TSS region transcription start site region 86301
Tssr86302 9 78615837 to 78615881 44 + TSS region transcription start site region 86302
4921509A06Rik 9 78629374 to 78630128 754 - antisense lncRNA gene RIKEN cDNA 4921509A06 gene
Tssr90660 9 78630367 to 78630379 12 - TSS region transcription start site region 90660
Tssr90661 9 78630380 to 78630396 16 - TSS region transcription start site region 90661
Tssr86303 9 78634217 to 78634261 44 + TSS region transcription start site region 86303
Gm47497 9 78765388 to 78765600 212 - pseudogene predicted gene, 47497
Gm46138 9 78767107 to 78767532 425 - pseudogene predicted gene, 46138
Gm39376 9 78785627 to 78789546 3919 + lncRNA gene predicted gene, 39376
Gm8116 9 78820638 to 78821838 1200 - pseudogene predicted gene 8116
Cpgi22074 9 78821609 to 78822198 589 CpG island CpG island 22074
D730047P14Rik 9 78821875 to 78822368 493 unclassified gene RIKEN cDNA D730047P14 gene
Gm47498 9 78936559 to 78936783 224 - pseudogene predicted gene, 47498
Tssr90662 9 78937070 to 78937072 2 - TSS region transcription start site region 90662
Gm18863 9 78942338 to 78943636 1298 - pseudogene predicted gene, 18863
Gm35024 9 79027032 to 79029744 2712 - lincRNA gene predicted gene, 35024