Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:78367107-79167532

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93 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dppa5a 9 78367052 to 78368177 1125 - protein coding gene developmental pluripotency associated 5A
Tssr90631 9 78368152 to 78368164 12 - TSS region transcription start site region 90631
Tssr90632 9 78368167 to 78368177 10 - TSS region transcription start site region 90632
Tssr90633 9 78368191 to 78368196 5 - TSS region transcription start site region 90633
Tssr86282 9 78369628 to 78369641 13 + TSS region transcription start site region 86282
Ooep 9 78376903 to 78378588 1685 - protein coding gene oocyte expressed protein
Tssr90634 9 78378148 to 78378160 12 - TSS region transcription start site region 90634
Tssr90635 9 78378169 to 78378199 30 - TSS region transcription start site region 90635
Tssr90636 9 78378525 to 78378536 11 - TSS region transcription start site region 90636
Tssr90637 9 78378546 to 78378562 16 - TSS region transcription start site region 90637
Tssr2947 9 78378581 to 78378582 1 - TSS region transcription start site region 2947
Tssr90638 9 78378660 to 78378705 45 - TSS region transcription start site region 90638
Gm8087 9 78388901 to 78389467 566 - pseudogene predicted gene 8087
4930542C12Rik 9 78394956 to 78396158 1202 - antisense lncRNA gene RIKEN cDNA 4930542C12 gene
Cpgi22065 9 78395306 to 78396501 1195 CpG island CpG island 22065
Ddx43 9 78395777 to 78423587 27810 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 43
Tssr86283 9 78395798 to 78395845 47 + TSS region transcription start site region 86283
Tssr86284 9 78395868 to 78395880 12 + TSS region transcription start site region 86284
Tssr90639 9 78396096 to 78396116 20 - TSS region transcription start site region 90639
D9Mit264 9 78415657 to 78415777 120 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 264
Gm8093 9 78427454 to 78429988 2534 + pseudogene predicted gene 8093
Cpgi22066 9 78427458 to 78427799 341 CpG island CpG island 22066
Tssr86285 9 78427686 to 78427707 21 + TSS region transcription start site region 86285
Tssr86286 9 78429060 to 78429076 16 + TSS region transcription start site region 86286
Cgas 9 78430526 to 78443237 12711 - protein coding gene cyclic GMP-AMP synthase
Cpgi22067 9 78442416 to 78443441 1025 CpG island CpG island 22067
Tssr90640 9 78442853 to 78442869 16 - TSS region transcription start site region 90640
Tssr90641 9 78443076 to 78443117 41 - TSS region transcription start site region 90641
Tssr90642 9 78443159 to 78443175 16 - TSS region transcription start site region 90642
Tssr90643 9 78443221 to 78443253 32 - TSS region transcription start site region 90643
Gm17324 9 78447865 to 78448786 921 - protein coding gene predicted gene, 17324
Mto1 9 78447870 to 78474165 26295 + protein coding gene mitochondrial tRNA translation optimization 1
Cpgi22068 9 78447980 to 78448924 944 CpG island CpG island 22068
Tssr86287 9 78448192 to 78448228 36 + TSS region transcription start site region 86287
Eef1a1 9 78478453 to 78481724 3271 - protein coding gene eukaryotic translation elongation factor 1 alpha 1
Gm26377 9 78478528 to 78478635 107 - miRNA gene predicted gene, 26377
Tssr90644 9 78479048 to 78479068 20 - TSS region transcription start site region 90644
Tssr86288 9 78479651 to 78479653 2 + TSS region transcription start site region 86288
Cpgi22069 9 78480728 to 78482282 1554 CpG island CpG island 22069
Tssr90645 9 78480736 to 78480782 46 - TSS region transcription start site region 90645
Tssr90646 9 78480798 to 78480818 20 - TSS region transcription start site region 90646
Tssr90647 9 78481657 to 78481714 57 - TSS region transcription start site region 90647
Tssr90648 9 78481724 to 78481751 27 - TSS region transcription start site region 90648
Tssr86289 9 78482013 to 78482036 23 + TSS region transcription start site region 86289
Tssr86290 9 78482061 to 78482077 16 + TSS region transcription start site region 86290
Tssr90649 9 78488116 to 78488147 31 - TSS region transcription start site region 90649
Tssr90650 9 78489141 to 78489166 25 - TSS region transcription start site region 90650
Tssr86291 9 78503511 to 78503529 18 + TSS region transcription start site region 86291
Tssr86292 9 78503935 to 78503960 25 + TSS region transcription start site region 86292
Gm47430 9 78520546 to 78522157 1611 + lincRNA gene predicted gene, 47430
Tssr86293 9 78520676 to 78520705 29 + TSS region transcription start site region 86293
Cpgi22070 9 78520714 to 78521122 408 CpG island CpG island 22070
Tssr86294 9 78520722 to 78520735 13 + TSS region transcription start site region 86294
Cpgi22071 9 78527408 to 78527585 177 CpG island CpG island 22071
Tssr90651 9 78527463 to 78527472 9 - TSS region transcription start site region 90651
Tssr2948 9 78532727 to 78532756 29 + TSS region transcription start site region 2948
Slc17a5 9 78536488 to 78588041 51553 - protein coding gene solute carrier family 17 (anion/sugar transporter), member 5
Tssr90652 9 78537679 to 78537690 11 - TSS region transcription start site region 90652
Tssr90653 9 78583231 to 78583249 18 - TSS region transcription start site region 90653
Tssr90654 9 78585076 to 78585087 11 - TSS region transcription start site region 90654
Tssr90655 9 78585113 to 78585124 11 - TSS region transcription start site region 90655
Tssr90656 9 78585125 to 78585135 10 - TSS region transcription start site region 90656
Tssr90657 9 78585149 to 78585173 24 - TSS region transcription start site region 90657
Cpgi22072 9 78587487 to 78588273 786 CpG island CpG island 22072
Tssr90658 9 78587968 to 78588047 79 - TSS region transcription start site region 90658
Tssr86295 9 78615452 to 78615474 22 + TSS region transcription start site region 86295
Tssr86296 9 78615482 to 78615493 11 + TSS region transcription start site region 86296
Cpgi22073 9 78615495 to 78616084 589 CpG island CpG island 22073
Tssr86297 9 78615501 to 78615509 8 + TSS region transcription start site region 86297
Cd109 9 78615546 to 78716253 100707 + protein coding gene CD109 antigen
Tssr90659 9 78615645 to 78615657 12 - TSS region transcription start site region 90659
Tssr86298 9 78615738 to 78615743 5 + TSS region transcription start site region 86298
Tssr86299 9 78615757 to 78615786 29 + TSS region transcription start site region 86299
Tssr86300 9 78615804 to 78615809 5 + TSS region transcription start site region 86300
Tssr86301 9 78615821 to 78615832 11 + TSS region transcription start site region 86301
Tssr86302 9 78615837 to 78615881 44 + TSS region transcription start site region 86302
4921509A06Rik 9 78629374 to 78630128 754 - antisense lncRNA gene RIKEN cDNA 4921509A06 gene
Tssr90660 9 78630367 to 78630379 12 - TSS region transcription start site region 90660
Tssr90661 9 78630380 to 78630396 16 - TSS region transcription start site region 90661
Tssr86303 9 78634217 to 78634261 44 + TSS region transcription start site region 86303
Gm47497 9 78765388 to 78765600 212 - pseudogene predicted gene, 47497
Gm46138 9 78767107 to 78767532 425 - pseudogene predicted gene, 46138
Gm39376 9 78785627 to 78789546 3919 + lncRNA gene predicted gene, 39376
Gm8116 9 78820638 to 78821838 1200 - pseudogene predicted gene 8116
Cpgi22074 9 78821609 to 78822198 589 CpG island CpG island 22074
D730047P14Rik 9 78821875 to 78822368 493 unclassified gene RIKEN cDNA D730047P14 gene
Gm47498 9 78936559 to 78936783 224 - pseudogene predicted gene, 47498
Tssr90662 9 78937070 to 78937072 2 - TSS region transcription start site region 90662
Gm18863 9 78942338 to 78943636 1298 - pseudogene predicted gene, 18863
Gm35024 9 79027032 to 79029744 2712 - lincRNA gene predicted gene, 35024
D9Mit268 9 79126590 to 79126704 114 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 268
D9Mit268.2 9 79126712 to 79126823 111 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 268.2
Gm47499 9 79159621 to 79202007 42386 - lincRNA gene predicted gene, 47499