Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:78343729-81053730

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248 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ksc1 9 75501755 to 80091050 4589295 QTL keratinocyte stem cell locus 1
In(9Bmp5-Myo6)5Rl 9 75775364 to 80311729 4536365 chromosomal inversion inversion, Chr 9, Russell 5
Gsta2 9 78331018 to 78347192 16174 - protein coding gene glutathione S-transferase, alpha 2 (Yc2)
Tssr90627 9 78347127 to 78347135 8 - TSS region transcription start site region 90627
Tssr90628 9 78347140 to 78347157 17 - TSS region transcription start site region 90628
Tssr90629 9 78347162 to 78347190 28 - TSS region transcription start site region 90629
Tssr90630 9 78355743 to 78355776 33 - TSS region transcription start site region 90630
Tssr86281 9 78366047 to 78366074 27 + TSS region transcription start site region 86281
Dppa5a 9 78367052 to 78368177 1125 - protein coding gene developmental pluripotency associated 5A
Tssr90631 9 78368152 to 78368164 12 - TSS region transcription start site region 90631
Tssr90632 9 78368167 to 78368177 10 - TSS region transcription start site region 90632
Tssr90633 9 78368191 to 78368196 5 - TSS region transcription start site region 90633
Tssr86282 9 78369628 to 78369641 13 + TSS region transcription start site region 86282
Ooep 9 78376903 to 78378588 1685 - protein coding gene oocyte expressed protein
Tssr90634 9 78378148 to 78378160 12 - TSS region transcription start site region 90634
Tssr90635 9 78378169 to 78378199 30 - TSS region transcription start site region 90635
Tssr90636 9 78378525 to 78378536 11 - TSS region transcription start site region 90636
Tssr90637 9 78378546 to 78378562 16 - TSS region transcription start site region 90637
Tssr2947 9 78378581 to 78378582 1 - TSS region transcription start site region 2947
Tssr90638 9 78378660 to 78378705 45 - TSS region transcription start site region 90638
Gm8087 9 78388901 to 78389467 566 - pseudogene predicted gene 8087
4930542C12Rik 9 78394956 to 78396158 1202 - antisense lncRNA gene RIKEN cDNA 4930542C12 gene
Cpgi22065 9 78395306 to 78396501 1195 CpG island CpG island 22065
Ddx43 9 78395777 to 78423587 27810 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 43
Tssr86283 9 78395798 to 78395845 47 + TSS region transcription start site region 86283
Tssr86284 9 78395868 to 78395880 12 + TSS region transcription start site region 86284
Tssr90639 9 78396096 to 78396116 20 - TSS region transcription start site region 90639
D9Mit264 9 78415657 to 78415777 120 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 264
Gm8093 9 78427454 to 78429988 2534 + pseudogene predicted gene 8093
Cpgi22066 9 78427458 to 78427799 341 CpG island CpG island 22066
Tssr86285 9 78427686 to 78427707 21 + TSS region transcription start site region 86285
Tssr86286 9 78429060 to 78429076 16 + TSS region transcription start site region 86286
Cgas 9 78430526 to 78443237 12711 - protein coding gene cyclic GMP-AMP synthase
Cpgi22067 9 78442416 to 78443441 1025 CpG island CpG island 22067
Tssr90640 9 78442853 to 78442869 16 - TSS region transcription start site region 90640
Tssr90641 9 78443076 to 78443117 41 - TSS region transcription start site region 90641
Tssr90642 9 78443159 to 78443175 16 - TSS region transcription start site region 90642
Tssr90643 9 78443221 to 78443253 32 - TSS region transcription start site region 90643
Gm17324 9 78447865 to 78448786 921 - protein coding gene predicted gene, 17324
Mto1 9 78447870 to 78474165 26295 + protein coding gene mitochondrial tRNA translation optimization 1
Cpgi22068 9 78447980 to 78448924 944 CpG island CpG island 22068
Tssr86287 9 78448192 to 78448228 36 + TSS region transcription start site region 86287
Eef1a1 9 78478453 to 78481724 3271 - protein coding gene eukaryotic translation elongation factor 1 alpha 1
Gm26377 9 78478528 to 78478635 107 - miRNA gene predicted gene, 26377
Tssr90644 9 78479048 to 78479068 20 - TSS region transcription start site region 90644
Tssr86288 9 78479651 to 78479653 2 + TSS region transcription start site region 86288
Cpgi22069 9 78480728 to 78482282 1554 CpG island CpG island 22069
Tssr90645 9 78480736 to 78480782 46 - TSS region transcription start site region 90645
Tssr90646 9 78480798 to 78480818 20 - TSS region transcription start site region 90646
Tssr90647 9 78481657 to 78481714 57 - TSS region transcription start site region 90647
Tssr90648 9 78481724 to 78481751 27 - TSS region transcription start site region 90648
Tssr86289 9 78482013 to 78482036 23 + TSS region transcription start site region 86289
Tssr86290 9 78482061 to 78482077 16 + TSS region transcription start site region 86290
Tssr90649 9 78488116 to 78488147 31 - TSS region transcription start site region 90649
Tssr90650 9 78489141 to 78489166 25 - TSS region transcription start site region 90650
Tssr86291 9 78503511 to 78503529 18 + TSS region transcription start site region 86291
Tssr86292 9 78503935 to 78503960 25 + TSS region transcription start site region 86292
Gm47430 9 78520546 to 78522157 1611 + lincRNA gene predicted gene, 47430
Tssr86293 9 78520676 to 78520705 29 + TSS region transcription start site region 86293
Cpgi22070 9 78520714 to 78521122 408 CpG island CpG island 22070
Tssr86294 9 78520722 to 78520735 13 + TSS region transcription start site region 86294
Cpgi22071 9 78527408 to 78527585 177 CpG island CpG island 22071
Tssr90651 9 78527463 to 78527472 9 - TSS region transcription start site region 90651
Tssr2948 9 78532727 to 78532756 29 + TSS region transcription start site region 2948
Slc17a5 9 78536488 to 78588041 51553 - protein coding gene solute carrier family 17 (anion/sugar transporter), member 5
Tssr90652 9 78537679 to 78537690 11 - TSS region transcription start site region 90652
Tssr90653 9 78583231 to 78583249 18 - TSS region transcription start site region 90653
Tssr90654 9 78585076 to 78585087 11 - TSS region transcription start site region 90654
Tssr90655 9 78585113 to 78585124 11 - TSS region transcription start site region 90655
Tssr90656 9 78585125 to 78585135 10 - TSS region transcription start site region 90656
Tssr90657 9 78585149 to 78585173 24 - TSS region transcription start site region 90657
Cpgi22072 9 78587487 to 78588273 786 CpG island CpG island 22072
Tssr90658 9 78587968 to 78588047 79 - TSS region transcription start site region 90658
Tssr86295 9 78615452 to 78615474 22 + TSS region transcription start site region 86295
Tssr86296 9 78615482 to 78615493 11 + TSS region transcription start site region 86296
Cpgi22073 9 78615495 to 78616084 589 CpG island CpG island 22073
Tssr86297 9 78615501 to 78615509 8 + TSS region transcription start site region 86297
Cd109 9 78615546 to 78716253 100707 + protein coding gene CD109 antigen
Tssr90659 9 78615645 to 78615657 12 - TSS region transcription start site region 90659
Tssr86298 9 78615738 to 78615743 5 + TSS region transcription start site region 86298
Tssr86299 9 78615757 to 78615786 29 + TSS region transcription start site region 86299
Tssr86300 9 78615804 to 78615809 5 + TSS region transcription start site region 86300
Tssr86301 9 78615821 to 78615832 11 + TSS region transcription start site region 86301
Tssr86302 9 78615837 to 78615881 44 + TSS region transcription start site region 86302
4921509A06Rik 9 78629374 to 78630128 754 - antisense lncRNA gene RIKEN cDNA 4921509A06 gene
Tssr90660 9 78630367 to 78630379 12 - TSS region transcription start site region 90660
Tssr90661 9 78630380 to 78630396 16 - TSS region transcription start site region 90661
Tssr86303 9 78634217 to 78634261 44 + TSS region transcription start site region 86303
Gm47497 9 78765388 to 78765600 212 - pseudogene predicted gene, 47497
Gm46138 9 78767107 to 78767532 425 - pseudogene predicted gene, 46138
Gm39376 9 78785627 to 78789546 3919 + lncRNA gene predicted gene, 39376
Gm8116 9 78820638 to 78821838 1200 - pseudogene predicted gene 8116
Cpgi22074 9 78821609 to 78822198 589 CpG island CpG island 22074
D730047P14Rik 9 78821875 to 78822368 493 unclassified gene RIKEN cDNA D730047P14 gene
Gm47498 9 78936559 to 78936783 224 - pseudogene predicted gene, 47498
Tssr90662 9 78937070 to 78937072 2 - TSS region transcription start site region 90662
Gm18863 9 78942338 to 78943636 1298 - pseudogene predicted gene, 18863
Gm35024 9 79027032 to 79029744 2712 - lincRNA gene predicted gene, 35024
D9Mit268 9 79126590 to 79126704 114 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 268
D9Mit268.2 9 79126712 to 79126823 111 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 268.2
Gm47499 9 79159621 to 79202007 42386 - lincRNA gene predicted gene, 47499
Gm47501 9 79215121 to 79267651 52530 - lincRNA gene predicted gene, 47501
Gm28620 9 79238620 to 79239058 438 + lincRNA gene predicted gene 28620
Lrnx3 9 79242485 to 79242599 114 QTL learning contextual 3
D9Nds2 9 79242485 to 79242599 114 DNA segment DNA segment, Chr 9, Nuffield Department of Surgery 2
Gm47500 9 79263892 to 79264275 383 + pseudogene predicted gene, 47500
Cpgi22075 9 79342149 to 79342921 772 CpG island CpG island 22075
Gm49264 9 79342236 to 79342940 704 - pseudogene predicted gene, 49264
Aldoa-ps3 9 79346321 to 79346626 305 - pseudogene aldolase A, pseudogene 3
Aldoa-ps4 9 79346774 to 79347523 749 + pseudogene aldolase A, pseudogene 4
Gm39377 9 79378119 to 79390855 12736 - lincRNA gene predicted gene, 39377
Gm35262 9 79395203 to 79395469 266 - pseudogene predicted gene, 35262
Gm10635 9 79444037 to 79519302 75265 - lincRNA gene predicted gene 10635
Gm8125 9 79573808 to 79574545 737 + pseudogene predicted gene 8125
Col12a1 9 79598991 to 79718831 119840 - protein coding gene collagen, type XII, alpha 1
Tssr90663 9 79599154 to 79599157 3 - TSS region transcription start site region 90663
Tssr90664 9 79639772 to 79639778 6 - TSS region transcription start site region 90664
Tssr86304 9 79688771 to 79688811 40 + TSS region transcription start site region 86304
4930562D21Rik 9 79688776 to 79690907 2131 + antisense lncRNA gene RIKEN cDNA 4930562D21 gene
Tssr90665 9 79691337 to 79691341 4 - TSS region transcription start site region 90665
Tssr90666 9 79698729 to 79698730 1 - TSS region transcription start site region 90666
Cpgi22076 9 79700295 to 79700452 157 CpG island CpG island 22076
Cpgi22077 9 79718297 to 79719204 907 CpG island CpG island 22077
Tssr90667 9 79718569 to 79718572 3 - TSS region transcription start site region 90667
Tssr90668 9 79718587 to 79718592 5 - TSS region transcription start site region 90668
Tssr90669 9 79718612 to 79718620 8 - TSS region transcription start site region 90669
Tssr90670 9 79718631 to 79718648 17 - TSS region transcription start site region 90670
Tssr90671 9 79718741 to 79718752 11 - TSS region transcription start site region 90671
Tssr90672 9 79718756 to 79718763 7 - TSS region transcription start site region 90672
Tssr90673 9 79718765 to 79718777 12 - TSS region transcription start site region 90673
Tssr90674 9 79718791 to 79718801 10 - TSS region transcription start site region 90674
Tssr90675 9 79718803 to 79718818 15 - TSS region transcription start site region 90675
Tssr90676 9 79718835 to 79718842 7 - TSS region transcription start site region 90676
Cpgi22078 9 79719500 to 79720015 515 CpG island CpG island 22078
Gm39378 9 79740310 to 79745742 5432 - lncRNA gene predicted gene, 39378
Cox7a2 9 79755361 to 79759878 4517 - protein coding gene cytochrome c oxidase subunit 7A2
Tssr86305 9 79755404 to 79755424 20 + TSS region transcription start site region 86305
Tssr90677 9 79758367 to 79758372 5 - TSS region transcription start site region 90677
Cpgi22079 9 79759349 to 79760181 832 CpG island CpG island 22079
Tssr90678 9 79759467 to 79759492 25 - TSS region transcription start site region 90678
Tssr90679 9 79759677 to 79759745 68 - TSS region transcription start site region 90679
Tssr90680 9 79759755 to 79759772 17 - TSS region transcription start site region 90680
Tssr90681 9 79759849 to 79759856 7 - TSS region transcription start site region 90681
Tssr90682 9 79759858 to 79759861 3 - TSS region transcription start site region 90682
Tssr90683 9 79759867 to 79759880 13 - TSS region transcription start site region 90683
Gm46121 9 79760276 to 79767544 7268 - lncRNA gene predicted gene, 46121
Tmem30a 9 79768941 to 79793430 24489 - protein coding gene transmembrane protein 30A
Tssr90684 9 79770387 to 79770428 41 - TSS region transcription start site region 90684
Cpgi22080 9 79792767 to 79793787 1020 CpG island CpG island 22080
Tssr90685 9 79792850 to 79792883 33 - TSS region transcription start site region 90685
Tssr86306 9 79792953 to 79792995 42 + TSS region transcription start site region 86306
Tssr90686 9 79793290 to 79793372 82 - TSS region transcription start site region 90686
Tssr90687 9 79793378 to 79793409 31 - TSS region transcription start site region 90687
Tssr90688 9 79793508 to 79793519 11 - TSS region transcription start site region 90688
Tssr90689 9 79793521 to 79793541 20 - TSS region transcription start site region 90689
Tssr90690 9 79793545 to 79793571 26 - TSS region transcription start site region 90690
Tssr86307 9 79793627 to 79793670 43 + TSS region transcription start site region 86307
4930429F24Rik 9 79793641 to 79803235 9594 + lincRNA gene RIKEN cDNA 4930429F24 gene
Filip1 9 79805018 to 79977882 172864 - protein coding gene filamin A interacting protein 1
Tssr90691 9 79811152 to 79811158 6 - TSS region transcription start site region 90691
Cpgi22081 9 79817919 to 79818270 351 CpG island CpG island 22081
Cpgi22082 9 79818776 to 79818971 195 CpG island CpG island 22082
Tssr90692 9 79830964 to 79830981 17 - TSS region transcription start site region 90692
Tssr90693 9 79830998 to 79831017 19 - TSS region transcription start site region 90693
Tssr90694 9 79831022 to 79831034 12 - TSS region transcription start site region 90694
Gm20477 9 79838108 to 79838387 279 - pseudogene predicted gene 20477
Tssr90695 9 79860338 to 79860365 27 - TSS region transcription start site region 90695
Cpgi22083 9 79875515 to 79875675 160 CpG island CpG island 22083
Gm3211 9 79913200 to 79913631 431 + unclassified non-coding RNA gene predicted gene 3211
Gm35261 9 79927052 to 79935739 8687 + lncRNA gene predicted gene, 35261
Tssr90696 9 79961961 to 79961976 15 - TSS region transcription start site region 90696
Tssr90697 9 79961983 to 79962001 18 - TSS region transcription start site region 90697
Tssr90698 9 79962018 to 79962031 13 - TSS region transcription start site region 90698
Tssr90699 9 79962045 to 79962088 43 - TSS region transcription start site region 90699
Tssr90700 9 79977540 to 79977549 9 - TSS region transcription start site region 90700
Tssr90701 9 79977574 to 79977585 11 - TSS region transcription start site region 90701
Tssr90702 9 79977628 to 79977633 5 - TSS region transcription start site region 90702
Tssr90703 9 79977638 to 79977662 24 - TSS region transcription start site region 90703
Tssr90704 9 79977684 to 79977702 18 - TSS region transcription start site region 90704
Tssr90705 9 79977782 to 79977809 27 - TSS region transcription start site region 90705
Tssr90706 9 79977810 to 79977836 26 - TSS region transcription start site region 90706
Tssr90707 9 79977838 to 79977861 23 - TSS region transcription start site region 90707
Tssr90708 9 80004059 to 80004077 18 - TSS region transcription start site region 90708
Tssr86308 9 80004212 to 80004238 26 + TSS region transcription start site region 86308
Gm8131 9 80004327 to 80005449 1122 + pseudogene predicted gene 8131
Cpgi22084 9 80005167 to 80005396 229 CpG island CpG island 22084
Tssr90709 9 80012851 to 80012855 4 - TSS region transcription start site region 90709
Gm25433 9 80037429 to 80037714 285 + unclassified non-coding RNA gene predicted gene, 25433
Gm46146 9 80043871 to 80044216 345 - pseudogene predicted gene, 46146
Cpgi22085 9 80066607 to 80068247 1640 CpG island CpG island 22085
Tssr86309 9 80066753 to 80066764 11 + TSS region transcription start site region 86309
Tssr86310 9 80066895 to 80066936 41 + TSS region transcription start site region 86310
Senp6 9 80066903 to 80144782 77879 + protein coding gene SUMO/sentrin specific peptidase 6
Tssr86311 9 80066939 to 80066983 44 + TSS region transcription start site region 86311
Tssr86312 9 80066987 to 80067006 19 + TSS region transcription start site region 86312
Tssr86313 9 80067009 to 80067047 38 + TSS region transcription start site region 86313
Tssr86314 9 80067058 to 80067085 27 + TSS region transcription start site region 86314
Tssr86315 9 80067087 to 80067119 32 + TSS region transcription start site region 86315
Tssr86316 9 80067153 to 80067165 12 + TSS region transcription start site region 86316
Tssr90710 9 80067361 to 80067370 9 - TSS region transcription start site region 90710