Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:78242582-78442599

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gsta1 9 78230669 to 78242683 12014 + protein coding gene glutathione S-transferase, alpha 1 (Ya)
D9Mit177a 9 78243185 to 78243292 107 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 177a
Dppa5b 9 78245550 to 78246135 585 + pseudogene developmental pluripotency associated 5B
Tssr86279 9 78257120 to 78257126 6 + TSS region transcription start site region 86279
Gm3776 9 78257129 to 78269166 12037 + protein coding gene predicted gene 3776
D9Mit177b 9 78269668 to 78269775 107 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 177b
Dppa5c 9 78271998 to 78272583 585 + pseudogene developmental pluripotency associated 5C
Gm10639 9 78289928 to 78305525 15597 + protein coding gene predicted gene 10639
Omt2a 9 78311972 to 78314796 2824 - protein coding gene oocyte maturation, alpha
Gm8074 9 78321299 to 78322354 1055 - protein coding gene predicted gene 8074
D9Mit74 9 78323938 to 78324072 134 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 74
D9Dcr15 9 78326649 to 78326745 96 DNA segment DNA segment, Chr 9, Derry C. Roopenian 15
Omt2b 9 78328030 to 78329620 1590 + protein coding gene oocyte maturation, beta
Gsta2 9 78331018 to 78347192 16174 - protein coding gene glutathione S-transferase, alpha 2 (Yc2)
Tssr2946 9 78333305 to 78333307 2 + TSS region transcription start site region 2946
Tssr86280 9 78340488 to 78340491 3 + TSS region transcription start site region 86280
Tssr90626 9 78342582 to 78342599 17 - TSS region transcription start site region 90626
Tssr90627 9 78347127 to 78347135 8 - TSS region transcription start site region 90627
Tssr90628 9 78347140 to 78347157 17 - TSS region transcription start site region 90628
Tssr90629 9 78347162 to 78347190 28 - TSS region transcription start site region 90629
Tssr90630 9 78355743 to 78355776 33 - TSS region transcription start site region 90630
Tssr86281 9 78366047 to 78366074 27 + TSS region transcription start site region 86281
Dppa5a 9 78367052 to 78368177 1125 - protein coding gene developmental pluripotency associated 5A
Tssr90631 9 78368152 to 78368164 12 - TSS region transcription start site region 90631
Tssr90632 9 78368167 to 78368177 10 - TSS region transcription start site region 90632
Tssr90633 9 78368191 to 78368196 5 - TSS region transcription start site region 90633
Tssr86282 9 78369628 to 78369641 13 + TSS region transcription start site region 86282
Ooep 9 78376903 to 78378588 1685 - protein coding gene oocyte expressed protein
Tssr90634 9 78378148 to 78378160 12 - TSS region transcription start site region 90634
Tssr90635 9 78378169 to 78378199 30 - TSS region transcription start site region 90635
Tssr90636 9 78378525 to 78378536 11 - TSS region transcription start site region 90636
Tssr90637 9 78378546 to 78378562 16 - TSS region transcription start site region 90637
Tssr2947 9 78378581 to 78378582 1 - TSS region transcription start site region 2947
Tssr90638 9 78378660 to 78378705 45 - TSS region transcription start site region 90638
Gm8087 9 78388901 to 78389467 566 - pseudogene predicted gene 8087
4930542C12Rik 9 78394956 to 78396158 1202 - antisense lncRNA gene RIKEN cDNA 4930542C12 gene
Cpgi22065 9 78395306 to 78396501 1195 CpG island CpG island 22065
Ddx43 9 78395777 to 78423587 27810 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 43
Tssr86283 9 78395798 to 78395845 47 + TSS region transcription start site region 86283
Tssr86284 9 78395868 to 78395880 12 + TSS region transcription start site region 86284
Tssr90639 9 78396096 to 78396116 20 - TSS region transcription start site region 90639
D9Mit264 9 78415657 to 78415777 120 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 264
Gm8093 9 78427454 to 78429988 2534 + pseudogene predicted gene 8093
Cpgi22066 9 78427458 to 78427799 341 CpG island CpG island 22066
Tssr86285 9 78427686 to 78427707 21 + TSS region transcription start site region 86285
Tssr86286 9 78429060 to 78429076 16 + TSS region transcription start site region 86286
Cgas 9 78430526 to 78443237 12711 - protein coding gene cyclic GMP-AMP synthase
Cpgi22067 9 78442416 to 78443441 1025 CpG island CpG island 22067