Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000


Click here to work with the entire chromosomal region 9:78154273-78254287

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28 genes found.
Gene symbol Chromo-
some
Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cilk1 9 78109192 to 78172107 62915 + protein coding gene ciliogenesis associated kinase 1
Tssr86264 9 78167302 to 78167348 46 + TSS region transcription start site region 86264
Tssr86265 9 78168830 to 78168833 3 + TSS region transcription start site region 86265
Rn7sk 9 78175303 to 78175633 330 - snRNA gene RNA, 7SK, nuclear
Tssr86266 9 78175357 to 78175384 27 + TSS region transcription start site region 86266
Cpgi22063 9 78175368 to 78176776 1408 CpG island CpG island 22063
Tssr86267 9 78175898 to 78175922 24 + TSS region transcription start site region 86267
C920006O11Rik 9 78175914 to 78178879 2965 + lncRNA gene RIKEN cDNA C920006O11 gene
Tssr86268 9 78175929 to 78175953 24 + TSS region transcription start site region 86268
Cpgi22064 9 78191819 to 78192031 212 CpG island CpG island 22064
Gsta4 9 78191966 to 78209349 17383 + protein coding gene glutathione S-transferase, alpha 4
Tssr86269 9 78191972 to 78191999 27 + TSS region transcription start site region 86269
Tssr86270 9 78192006 to 78192023 17 + TSS region transcription start site region 86270
Tssr86271 9 78198119 to 78198141 22 + TSS region transcription start site region 86271
Tssr86272 9 78204273 to 78204287 14 + TSS region transcription start site region 86272
Tssr86273 9 78204291 to 78204307 16 + TSS region transcription start site region 86273
Tssr90623 9 78205965 to 78205992 27 - TSS region transcription start site region 90623
Tssr90624 9 78205996 to 78206029 33 - TSS region transcription start site region 90624
Tssr86274 9 78206016 to 78206029 13 + TSS region transcription start site region 86274
Tssr90625 9 78209254 to 78209334 80 - TSS region transcription start site region 90625
Tssr86275 9 78209276 to 78209299 23 + TSS region transcription start site region 86275
Gm3126 9 78213378 to 78214845 1467 - pseudogene predicted gene 3126
Tssr86276 9 78230644 to 78230664 20 + TSS region transcription start site region 86276
Tssr86277 9 78230665 to 78230675 10 + TSS region transcription start site region 86277
Gsta1 9 78230669 to 78242683 12014 + protein coding gene glutathione S-transferase, alpha 1 (Ya)
Tssr86278 9 78230679 to 78230691 12 + TSS region transcription start site region 86278
D9Mit177a 9 78243185 to 78243292 107 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 177a
Dppa5b 9 78245550 to 78246135 585 + pseudogene developmental pluripotency associated 5B