Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:78004467-81514492

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311 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ksc1 9 75501755 to 80091050 4589295 QTL keratinocyte stem cell locus 1
In(9Bmp5-Myo6)5Rl 9 75775364 to 80311729 4536365 chromosomal inversion inversion, Chr 9, Russell 5
Gm23609 9 78013972 to 78014098 126 - snoRNA gene predicted gene, 23609
Gm39375 9 78015018 to 78020703 5685 + lincRNA gene predicted gene, 39375
Gm47829 9 78027945 to 78028089 144 + pseudogene predicted gene, 47829
Tssr86256 9 78051938 to 78051948 10 + TSS region transcription start site region 86256
Gcm1 9 78051958 to 78065624 13666 + protein coding gene glial cells missing homolog 1
Gm8058 9 78068851 to 78069437 586 + pseudogene predicted gene 8058
Fbxo9 9 78081499 to 78109065 27566 - protein coding gene f-box protein 9
Cpgi22061 9 78107854 to 78109190 1336 CpG island CpG island 22061
Tssr90619 9 78108567 to 78108576 9 - TSS region transcription start site region 90619
Tssr90620 9 78108588 to 78108616 28 - TSS region transcription start site region 90620
Tssr90621 9 78108617 to 78108650 33 - TSS region transcription start site region 90621
Tssr90622 9 78109020 to 78109067 47 - TSS region transcription start site region 90622
Tssr86257 9 78109188 to 78109285 97 + TSS region transcription start site region 86257
Ick 9 78109192 to 78172107 62915 + protein coding gene intestinal cell kinase
Cpgi22062 9 78113123 to 78113629 506 CpG island CpG island 22062
Tssr86258 9 78113232 to 78113248 16 + TSS region transcription start site region 86258
Tssr86259 9 78113251 to 78113261 10 + TSS region transcription start site region 86259
Tssr86260 9 78113275 to 78113346 71 + TSS region transcription start site region 86260
Tssr86261 9 78113350 to 78113355 5 + TSS region transcription start site region 86261
Tssr86262 9 78113358 to 78113373 15 + TSS region transcription start site region 86262
Tssr86263 9 78113390 to 78113402 12 + TSS region transcription start site region 86263
Tssr86264 9 78167302 to 78167348 46 + TSS region transcription start site region 86264
Tssr86265 9 78168830 to 78168833 3 + TSS region transcription start site region 86265
Rn7sk 9 78175303 to 78175633 330 - SRP RNA gene RNA, 7SK, nuclear
Tssr86266 9 78175357 to 78175384 27 + TSS region transcription start site region 86266
Cpgi22063 9 78175368 to 78176776 1408 CpG island CpG island 22063
Tssr86267 9 78175898 to 78175922 24 + TSS region transcription start site region 86267
C920006O11Rik 9 78175914 to 78178879 2965 + lincRNA gene RIKEN cDNA C920006O11 gene
Tssr86268 9 78175929 to 78175953 24 + TSS region transcription start site region 86268
Cpgi22064 9 78191819 to 78192031 212 CpG island CpG island 22064
Gsta4 9 78191966 to 78209349 17383 + protein coding gene glutathione S-transferase, alpha 4
Tssr86269 9 78191972 to 78191999 27 + TSS region transcription start site region 86269
Tssr86270 9 78192006 to 78192023 17 + TSS region transcription start site region 86270
Tssr86271 9 78198119 to 78198141 22 + TSS region transcription start site region 86271
Tssr86272 9 78204273 to 78204287 14 + TSS region transcription start site region 86272
Tssr86273 9 78204291 to 78204307 16 + TSS region transcription start site region 86273
Tssr90623 9 78205965 to 78205992 27 - TSS region transcription start site region 90623
Tssr90624 9 78205996 to 78206029 33 - TSS region transcription start site region 90624
Tssr86274 9 78206016 to 78206029 13 + TSS region transcription start site region 86274
Tssr90625 9 78209254 to 78209334 80 - TSS region transcription start site region 90625
Tssr86275 9 78209276 to 78209299 23 + TSS region transcription start site region 86275
Gm3126 9 78213378 to 78214845 1467 - pseudogene predicted gene 3126
Tssr86276 9 78230644 to 78230664 20 + TSS region transcription start site region 86276
Tssr86277 9 78230665 to 78230675 10 + TSS region transcription start site region 86277
Gsta1 9 78230669 to 78242683 12014 + protein coding gene glutathione S-transferase, alpha 1 (Ya)
Tssr86278 9 78230679 to 78230691 12 + TSS region transcription start site region 86278
D9Mit177a 9 78243185 to 78243292 107 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 177a
Dppa5b 9 78245550 to 78246135 585 + pseudogene developmental pluripotency associated 5B
Tssr86279 9 78257120 to 78257126 6 + TSS region transcription start site region 86279
Gm3776 9 78257129 to 78269166 12037 + protein coding gene predicted gene 3776
D9Mit177b 9 78269668 to 78269775 107 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 177b
Dppa5c 9 78271998 to 78272583 585 + pseudogene developmental pluripotency associated 5C
Gm10639 9 78289928 to 78305525 15597 + protein coding gene predicted gene 10639
Omt2a 9 78311972 to 78314796 2824 - protein coding gene oocyte maturation, alpha
Gm8074 9 78321299 to 78322354 1055 - protein coding gene predicted gene 8074
D9Mit74 9 78323938 to 78324072 134 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 74
D9Dcr15 9 78326649 to 78326745 96 DNA segment DNA segment, Chr 9, Derry C. Roopenian 15
Omt2b 9 78328030 to 78329620 1590 + protein coding gene oocyte maturation, beta
Gsta2 9 78331018 to 78347192 16174 - protein coding gene glutathione S-transferase, alpha 2 (Yc2)
Tssr2946 9 78333305 to 78333307 2 + TSS region transcription start site region 2946
Tssr86280 9 78340488 to 78340491 3 + TSS region transcription start site region 86280
Tssr90626 9 78342582 to 78342599 17 - TSS region transcription start site region 90626
Tssr90627 9 78347127 to 78347135 8 - TSS region transcription start site region 90627
Tssr90628 9 78347140 to 78347157 17 - TSS region transcription start site region 90628
Tssr90629 9 78347162 to 78347190 28 - TSS region transcription start site region 90629
Tssr90630 9 78355743 to 78355776 33 - TSS region transcription start site region 90630
Tssr86281 9 78366047 to 78366074 27 + TSS region transcription start site region 86281
Dppa5a 9 78367052 to 78368177 1125 - protein coding gene developmental pluripotency associated 5A
Tssr90631 9 78368152 to 78368164 12 - TSS region transcription start site region 90631
Tssr90632 9 78368167 to 78368177 10 - TSS region transcription start site region 90632
Tssr90633 9 78368191 to 78368196 5 - TSS region transcription start site region 90633
Tssr86282 9 78369628 to 78369641 13 + TSS region transcription start site region 86282
Ooep 9 78376903 to 78378588 1685 - protein coding gene oocyte expressed protein
Tssr90634 9 78378148 to 78378160 12 - TSS region transcription start site region 90634
Tssr90635 9 78378169 to 78378199 30 - TSS region transcription start site region 90635
Tssr90636 9 78378525 to 78378536 11 - TSS region transcription start site region 90636
Tssr90637 9 78378546 to 78378562 16 - TSS region transcription start site region 90637
Tssr2947 9 78378581 to 78378582 1 - TSS region transcription start site region 2947
Tssr90638 9 78378660 to 78378705 45 - TSS region transcription start site region 90638
Gm8087 9 78388901 to 78389467 566 - pseudogene predicted gene 8087
4930542C12Rik 9 78394956 to 78396158 1202 - antisense lncRNA gene RIKEN cDNA 4930542C12 gene
Cpgi22065 9 78395306 to 78396501 1195 CpG island CpG island 22065
Ddx43 9 78395777 to 78423587 27810 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 43
Tssr86283 9 78395798 to 78395845 47 + TSS region transcription start site region 86283
Tssr86284 9 78395868 to 78395880 12 + TSS region transcription start site region 86284
Tssr90639 9 78396096 to 78396116 20 - TSS region transcription start site region 90639
D9Mit264 9 78415657 to 78415777 120 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 264
Gm8093 9 78427454 to 78429988 2534 + pseudogene predicted gene 8093
Cpgi22066 9 78427458 to 78427799 341 CpG island CpG island 22066
Tssr86285 9 78427686 to 78427707 21 + TSS region transcription start site region 86285
Tssr86286 9 78429060 to 78429076 16 + TSS region transcription start site region 86286
Cgas 9 78430526 to 78443237 12711 - protein coding gene cyclic GMP-AMP synthase
Cpgi22067 9 78442416 to 78443441 1025 CpG island CpG island 22067
Tssr90640 9 78442853 to 78442869 16 - TSS region transcription start site region 90640
Tssr90641 9 78443076 to 78443117 41 - TSS region transcription start site region 90641
Tssr90642 9 78443159 to 78443175 16 - TSS region transcription start site region 90642
Tssr90643 9 78443221 to 78443253 32 - TSS region transcription start site region 90643
Gm17324 9 78447865 to 78448786 921 - protein coding gene predicted gene, 17324
Mto1 9 78447870 to 78474165 26295 + protein coding gene mitochondrial tRNA translation optimization 1
Cpgi22068 9 78447980 to 78448924 944 CpG island CpG island 22068
Tssr86287 9 78448192 to 78448228 36 + TSS region transcription start site region 86287
Eef1a1 9 78478453 to 78481724 3271 - protein coding gene eukaryotic translation elongation factor 1 alpha 1
Gm26377 9 78478528 to 78478635 107 - miRNA gene predicted gene, 26377
Tssr90644 9 78479048 to 78479068 20 - TSS region transcription start site region 90644
Tssr86288 9 78479651 to 78479653 2 + TSS region transcription start site region 86288
Cpgi22069 9 78480728 to 78482282 1554 CpG island CpG island 22069
Tssr90645 9 78480736 to 78480782 46 - TSS region transcription start site region 90645
Tssr90646 9 78480798 to 78480818 20 - TSS region transcription start site region 90646
Tssr90647 9 78481657 to 78481714 57 - TSS region transcription start site region 90647
Tssr90648 9 78481724 to 78481751 27 - TSS region transcription start site region 90648
Tssr86289 9 78482013 to 78482036 23 + TSS region transcription start site region 86289
Tssr86290 9 78482061 to 78482077 16 + TSS region transcription start site region 86290
Tssr90649 9 78488116 to 78488147 31 - TSS region transcription start site region 90649
Tssr90650 9 78489141 to 78489166 25 - TSS region transcription start site region 90650
Tssr86291 9 78503511 to 78503529 18 + TSS region transcription start site region 86291
Tssr86292 9 78503935 to 78503960 25 + TSS region transcription start site region 86292
Gm47430 9 78520546 to 78522157 1611 + lincRNA gene predicted gene, 47430
Tssr86293 9 78520676 to 78520705 29 + TSS region transcription start site region 86293
Cpgi22070 9 78520714 to 78521122 408 CpG island CpG island 22070
Tssr86294 9 78520722 to 78520735 13 + TSS region transcription start site region 86294
Cpgi22071 9 78527408 to 78527585 177 CpG island CpG island 22071
Tssr90651 9 78527463 to 78527472 9 - TSS region transcription start site region 90651
Tssr2948 9 78532727 to 78532756 29 + TSS region transcription start site region 2948
Slc17a5 9 78536488 to 78588041 51553 - protein coding gene solute carrier family 17 (anion/sugar transporter), member 5
Tssr90652 9 78537679 to 78537690 11 - TSS region transcription start site region 90652
Tssr90653 9 78583231 to 78583249 18 - TSS region transcription start site region 90653
Tssr90654 9 78585076 to 78585087 11 - TSS region transcription start site region 90654
Tssr90655 9 78585113 to 78585124 11 - TSS region transcription start site region 90655
Tssr90656 9 78585125 to 78585135 10 - TSS region transcription start site region 90656
Tssr90657 9 78585149 to 78585173 24 - TSS region transcription start site region 90657
Cpgi22072 9 78587487 to 78588273 786 CpG island CpG island 22072
Tssr90658 9 78587968 to 78588047 79 - TSS region transcription start site region 90658
Tssr86295 9 78615452 to 78615474 22 + TSS region transcription start site region 86295
Tssr86296 9 78615482 to 78615493 11 + TSS region transcription start site region 86296
Cpgi22073 9 78615495 to 78616084 589 CpG island CpG island 22073
Tssr86297 9 78615501 to 78615509 8 + TSS region transcription start site region 86297
Cd109 9 78615546 to 78716253 100707 + protein coding gene CD109 antigen
Tssr90659 9 78615645 to 78615657 12 - TSS region transcription start site region 90659
Tssr86298 9 78615738 to 78615743 5 + TSS region transcription start site region 86298
Tssr86299 9 78615757 to 78615786 29 + TSS region transcription start site region 86299
Tssr86300 9 78615804 to 78615809 5 + TSS region transcription start site region 86300
Tssr86301 9 78615821 to 78615832 11 + TSS region transcription start site region 86301
Tssr86302 9 78615837 to 78615881 44 + TSS region transcription start site region 86302
4921509A06Rik 9 78629374 to 78630128 754 - antisense lncRNA gene RIKEN cDNA 4921509A06 gene
Tssr90660 9 78630367 to 78630379 12 - TSS region transcription start site region 90660
Tssr90661 9 78630380 to 78630396 16 - TSS region transcription start site region 90661
Tssr86303 9 78634217 to 78634261 44 + TSS region transcription start site region 86303
Gm47497 9 78765388 to 78765600 212 - pseudogene predicted gene, 47497
Gm46138 9 78767107 to 78767532 425 - pseudogene predicted gene, 46138
Gm39376 9 78785627 to 78789546 3919 + lncRNA gene predicted gene, 39376
Gm8116 9 78820638 to 78821838 1200 - pseudogene predicted gene 8116
Cpgi22074 9 78821609 to 78822198 589 CpG island CpG island 22074
D730047P14Rik 9 78821875 to 78822368 493 unclassified gene RIKEN cDNA D730047P14 gene
Gm47498 9 78936559 to 78936783 224 - pseudogene predicted gene, 47498
Tssr90662 9 78937070 to 78937072 2 - TSS region transcription start site region 90662
Gm18863 9 78942338 to 78943636 1298 - pseudogene predicted gene, 18863
Gm35024 9 79027032 to 79029744 2712 - lincRNA gene predicted gene, 35024
D9Mit268 9 79126590 to 79126704 114 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 268
D9Mit268.2 9 79126712 to 79126823 111 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 268.2
Gm47499 9 79159621 to 79202007 42386 - lincRNA gene predicted gene, 47499
Gm47501 9 79215121 to 79267651 52530 - lincRNA gene predicted gene, 47501
Gm28620 9 79238620 to 79239058 438 + lincRNA gene predicted gene 28620
Lrnx3 9 79242485 to 79242599 114 QTL learning contextual 3
D9Nds2 9 79242485 to 79242599 114 DNA segment DNA segment, Chr 9, Nuffield Department of Surgery 2
Gm47500 9 79263892 to 79264275 383 + pseudogene predicted gene, 47500
Cpgi22075 9 79342149 to 79342921 772 CpG island CpG island 22075
Gm49264 9 79342236 to 79342940 704 - pseudogene predicted gene, 49264
Aldoa-ps3 9 79346321 to 79346626 305 - pseudogene aldolase A, pseudogene 3
Aldoa-ps4 9 79346774 to 79347523 749 + pseudogene aldolase A, pseudogene 4
Gm39377 9 79378119 to 79390855 12736 - lincRNA gene predicted gene, 39377
Gm35262 9 79395203 to 79395469 266 - pseudogene predicted gene, 35262
Gm10635 9 79444037 to 79519302 75265 - lincRNA gene predicted gene 10635
Gm8125 9 79573808 to 79574545 737 + pseudogene predicted gene 8125
Col12a1 9 79598991 to 79718831 119840 - protein coding gene collagen, type XII, alpha 1
Tssr90663 9 79599154 to 79599157 3 - TSS region transcription start site region 90663
Tssr90664 9 79639772 to 79639778 6 - TSS region transcription start site region 90664
Tssr86304 9 79688771 to 79688811 40 + TSS region transcription start site region 86304
4930562D21Rik 9 79688776 to 79690907 2131 + antisense lncRNA gene RIKEN cDNA 4930562D21 gene
Tssr90665 9 79691337 to 79691341 4 - TSS region transcription start site region 90665
Tssr90666 9 79698729 to 79698730 1 - TSS region transcription start site region 90666
Cpgi22076 9 79700295 to 79700452 157 CpG island CpG island 22076
Cpgi22077 9 79718297 to 79719204 907 CpG island CpG island 22077
Tssr90667 9 79718569 to 79718572 3 - TSS region transcription start site region 90667
Tssr90668 9 79718587 to 79718592 5 - TSS region transcription start site region 90668
Tssr90669 9 79718612 to 79718620 8 - TSS region transcription start site region 90669
Tssr90670 9 79718631 to 79718648 17 - TSS region transcription start site region 90670
Tssr90671 9 79718741 to 79718752 11 - TSS region transcription start site region 90671
Tssr90672 9 79718756 to 79718763 7 - TSS region transcription start site region 90672
Tssr90673 9 79718765 to 79718777 12 - TSS region transcription start site region 90673
Tssr90674 9 79718791 to 79718801 10 - TSS region transcription start site region 90674
Tssr90675 9 79718803 to 79718818 15 - TSS region transcription start site region 90675
Tssr90676 9 79718835 to 79718842 7 - TSS region transcription start site region 90676
Cpgi22078 9 79719500 to 79720015 515 CpG island CpG island 22078
Gm39378 9 79740310 to 79745742 5432 - lncRNA gene predicted gene, 39378
Cox7a2 9 79755361 to 79759878 4517 - protein coding gene cytochrome c oxidase subunit 7A2
Tssr86305 9 79755404 to 79755424 20 + TSS region transcription start site region 86305
Tssr90677 9 79758367 to 79758372 5 - TSS region transcription start site region 90677
Cpgi22079 9 79759349 to 79760181 832 CpG island CpG island 22079