Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:78004276-78414299

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm23609 9 78013972 to 78014098 126 - snoRNA gene predicted gene, 23609
Gm39375 9 78015018 to 78020703 5685 + lincRNA gene predicted gene, 39375
Gm47829 9 78027945 to 78028089 144 + pseudogene predicted gene, 47829
Tssr86256 9 78051938 to 78051948 10 + TSS region transcription start site region 86256
Gcm1 9 78051958 to 78065624 13666 + protein coding gene glial cells missing homolog 1
Gm8058 9 78068851 to 78069437 586 + pseudogene predicted gene 8058
Fbxo9 9 78081499 to 78109065 27566 - protein coding gene f-box protein 9
Cpgi22061 9 78107854 to 78109190 1336 CpG island CpG island 22061
Tssr90619 9 78108567 to 78108576 9 - TSS region transcription start site region 90619
Tssr90620 9 78108588 to 78108616 28 - TSS region transcription start site region 90620
Tssr90621 9 78108617 to 78108650 33 - TSS region transcription start site region 90621
Tssr90622 9 78109020 to 78109067 47 - TSS region transcription start site region 90622
Tssr86257 9 78109188 to 78109285 97 + TSS region transcription start site region 86257
Ick 9 78109192 to 78172107 62915 + protein coding gene intestinal cell kinase
Cpgi22062 9 78113123 to 78113629 506 CpG island CpG island 22062
Tssr86258 9 78113232 to 78113248 16 + TSS region transcription start site region 86258
Tssr86259 9 78113251 to 78113261 10 + TSS region transcription start site region 86259
Tssr86260 9 78113275 to 78113346 71 + TSS region transcription start site region 86260
Tssr86261 9 78113350 to 78113355 5 + TSS region transcription start site region 86261
Tssr86262 9 78113358 to 78113373 15 + TSS region transcription start site region 86262
Tssr86263 9 78113390 to 78113402 12 + TSS region transcription start site region 86263
Tssr86264 9 78167302 to 78167348 46 + TSS region transcription start site region 86264
Tssr86265 9 78168830 to 78168833 3 + TSS region transcription start site region 86265
Rn7sk 9 78175303 to 78175633 330 - SRP RNA gene RNA, 7SK, nuclear
Tssr86266 9 78175357 to 78175384 27 + TSS region transcription start site region 86266
Cpgi22063 9 78175368 to 78176776 1408 CpG island CpG island 22063
Tssr86267 9 78175898 to 78175922 24 + TSS region transcription start site region 86267
C920006O11Rik 9 78175914 to 78178879 2965 + lincRNA gene RIKEN cDNA C920006O11 gene
Tssr86268 9 78175929 to 78175953 24 + TSS region transcription start site region 86268
Cpgi22064 9 78191819 to 78192031 212 CpG island CpG island 22064
Gsta4 9 78191966 to 78209349 17383 + protein coding gene glutathione S-transferase, alpha 4
Tssr86269 9 78191972 to 78191999 27 + TSS region transcription start site region 86269
Tssr86270 9 78192006 to 78192023 17 + TSS region transcription start site region 86270
Tssr86271 9 78198119 to 78198141 22 + TSS region transcription start site region 86271
Tssr86272 9 78204273 to 78204287 14 + TSS region transcription start site region 86272
Tssr86273 9 78204291 to 78204307 16 + TSS region transcription start site region 86273
Tssr90623 9 78205965 to 78205992 27 - TSS region transcription start site region 90623
Tssr90624 9 78205996 to 78206029 33 - TSS region transcription start site region 90624
Tssr86274 9 78206016 to 78206029 13 + TSS region transcription start site region 86274
Tssr90625 9 78209254 to 78209334 80 - TSS region transcription start site region 90625
Tssr86275 9 78209276 to 78209299 23 + TSS region transcription start site region 86275
Gm3126 9 78213378 to 78214845 1467 - pseudogene predicted gene 3126
Tssr86276 9 78230644 to 78230664 20 + TSS region transcription start site region 86276
Tssr86277 9 78230665 to 78230675 10 + TSS region transcription start site region 86277
Gsta1 9 78230669 to 78242683 12014 + protein coding gene glutathione S-transferase, alpha 1 (Ya)
Tssr86278 9 78230679 to 78230691 12 + TSS region transcription start site region 86278
D9Mit177a 9 78243185 to 78243292 107 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 177a
Dppa5b 9 78245550 to 78246135 585 + pseudogene developmental pluripotency associated 5B
Tssr86279 9 78257120 to 78257126 6 + TSS region transcription start site region 86279
Gm3776 9 78257129 to 78269166 12037 + protein coding gene predicted gene 3776
D9Mit177b 9 78269668 to 78269775 107 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 177b
Dppa5c 9 78271998 to 78272583 585 + pseudogene developmental pluripotency associated 5C
Gm10639 9 78289928 to 78305525 15597 + protein coding gene predicted gene 10639
Omt2a 9 78311972 to 78314796 2824 - protein coding gene oocyte maturation, alpha
Gm8074 9 78321299 to 78322354 1055 - protein coding gene predicted gene 8074
D9Mit74 9 78323938 to 78324072 134 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 74
D9Dcr15 9 78326649 to 78326745 96 DNA segment DNA segment, Chr 9, Derry C. Roopenian 15
Omt2b 9 78328030 to 78329620 1590 + protein coding gene oocyte maturation, beta
Gsta2 9 78331018 to 78347192 16174 - protein coding gene glutathione S-transferase, alpha 2 (Yc2)
Tssr2946 9 78333305 to 78333307 2 + TSS region transcription start site region 2946
Tssr86280 9 78340488 to 78340491 3 + TSS region transcription start site region 86280
Tssr90626 9 78342582 to 78342599 17 - TSS region transcription start site region 90626
Tssr90627 9 78347127 to 78347135 8 - TSS region transcription start site region 90627
Tssr90628 9 78347140 to 78347157 17 - TSS region transcription start site region 90628
Tssr90629 9 78347162 to 78347190 28 - TSS region transcription start site region 90629
Tssr90630 9 78355743 to 78355776 33 - TSS region transcription start site region 90630
Tssr86281 9 78366047 to 78366074 27 + TSS region transcription start site region 86281
Dppa5a 9 78367052 to 78368177 1125 - protein coding gene developmental pluripotency associated 5A
Tssr90631 9 78368152 to 78368164 12 - TSS region transcription start site region 90631
Tssr90632 9 78368167 to 78368177 10 - TSS region transcription start site region 90632
Tssr90633 9 78368191 to 78368196 5 - TSS region transcription start site region 90633
Tssr86282 9 78369628 to 78369641 13 + TSS region transcription start site region 86282
Ooep 9 78376903 to 78378588 1685 - protein coding gene oocyte expressed protein
Tssr90634 9 78378148 to 78378160 12 - TSS region transcription start site region 90634
Tssr90635 9 78378169 to 78378199 30 - TSS region transcription start site region 90635
Tssr90636 9 78378525 to 78378536 11 - TSS region transcription start site region 90636
Tssr90637 9 78378546 to 78378562 16 - TSS region transcription start site region 90637
Tssr2947 9 78378581 to 78378582 1 - TSS region transcription start site region 2947
Tssr90638 9 78378660 to 78378705 45 - TSS region transcription start site region 90638
Gm8087 9 78388901 to 78389467 566 - pseudogene predicted gene 8087
4930542C12Rik 9 78394956 to 78396158 1202 - antisense lncRNA gene RIKEN cDNA 4930542C12 gene
Cpgi22065 9 78395306 to 78396501 1195 CpG island CpG island 22065
Ddx43 9 78395777 to 78423587 27810 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 43
Tssr86283 9 78395798 to 78395845 47 + TSS region transcription start site region 86283
Tssr86284 9 78395868 to 78395880 12 + TSS region transcription start site region 86284
Tssr90639 9 78396096 to 78396116 20 - TSS region transcription start site region 90639