Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:77646774-81047523

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386 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ksc1 9 75501755 to 80091050 4589295 QTL keratinocyte stem cell locus 1
In(9Bmp5-Myo6)5Rl 9 75775364 to 80311729 4536365 chromosomal inversion inversion, Chr 9, Russell 5
Klhl31 9 77636732 to 77660125 23393 + protein coding gene kelch-like 31
Tssr86202 9 77652688 to 77652694 6 + TSS region transcription start site region 86202
Cpgi22056 9 77654799 to 77655958 1159 CpG island CpG island 22056
Tssr86203 9 77656665 to 77656685 20 + TSS region transcription start site region 86203
Tssr86204 9 77657394 to 77657399 5 + TSS region transcription start site region 86204
Gm47790 9 77692197 to 77730279 38082 - lincRNA gene predicted gene, 47790
Gm47789 9 77706558 to 77707882 1324 - lincRNA gene predicted gene, 47789
Tssr90615 9 77707847 to 77707871 24 - TSS region transcription start site region 90615
Gm47795 9 77730737 to 77733268 2531 - lincRNA gene predicted gene, 47795
Tssr90616 9 77733283 to 77733289 6 - TSS region transcription start site region 90616
Cpgi22057 9 77750268 to 77751352 1084 CpG island CpG island 22057
Cpgi22058 9 77754387 to 77755221 834 CpG island CpG island 22058
Tssr86205 9 77754526 to 77754541 15 + TSS region transcription start site region 86205
Gclc 9 77754535 to 77794485 39950 + protein coding gene glutamate-cysteine ligase, catalytic subunit
Tssr86206 9 77754548 to 77754620 72 + TSS region transcription start site region 86206
Tssr86207 9 77784294 to 77784309 15 + TSS region transcription start site region 86207
Tssr86208 9 77784653 to 77784656 3 + TSS region transcription start site region 86208
Tssr86209 9 77784692 to 77784704 12 + TSS region transcription start site region 86209
Gm34654 9 77807036 to 77809793 2757 - lincRNA gene predicted gene, 34654
Gm47818 9 77836030 to 77848111 12081 + lincRNA gene predicted gene, 47818
Tssr86210 9 77838830 to 77838837 7 + TSS region transcription start site region 86210
Tssr86211 9 77838848 to 77838855 7 + TSS region transcription start site region 86211
Tssr86212 9 77838867 to 77838879 12 + TSS region transcription start site region 86212
Tssr86213 9 77838892 to 77838894 2 + TSS region transcription start site region 86213
Gm19572 9 77851708 to 77852045 337 + pseudogene predicted gene, 19572
Gm47824 9 77901529 to 77902619 1090 + unclassified gene predicted gene, 47824
Cpgi22059 9 77910365 to 77911078 713 CpG island CpG island 22059
Cpgi22060 9 77917095 to 77918158 1063 CpG island CpG island 22060
Tssr90617 9 77917144 to 77917164 20 - TSS region transcription start site region 90617
Tssr86214 9 77917185 to 77917207 22 + TSS region transcription start site region 86214
Tssr86215 9 77917208 to 77917223 15 + TSS region transcription start site region 86215
Tssr86216 9 77917248 to 77917257 9 + TSS region transcription start site region 86216
Elovl5 9 77917365 to 77984519 67154 + protein coding gene ELOVL family member 5, elongation of long chain fatty acids (yeast)
Tssr86217 9 77917375 to 77917386 11 + TSS region transcription start site region 86217
Tssr86218 9 77917397 to 77917453 56 + TSS region transcription start site region 86218
Tssr2945 9 77917462 to 77917473 11 + TSS region transcription start site region 2945
Tssr86219 9 77920178 to 77920187 9 + TSS region transcription start site region 86219
Tssr86220 9 77920400 to 77920403 3 + TSS region transcription start site region 86220
Tssr86221 9 77921476 to 77921481 5 + TSS region transcription start site region 86221
Tssr86222 9 77921485 to 77921500 15 + TSS region transcription start site region 86222
Tssr86223 9 77921522 to 77921527 5 + TSS region transcription start site region 86223
Tssr86224 9 77921721 to 77921746 25 + TSS region transcription start site region 86224
Tssr86225 9 77921908 to 77921919 11 + TSS region transcription start site region 86225
Tssr86226 9 77923268 to 77923272 4 + TSS region transcription start site region 86226
Tssr86227 9 77923317 to 77923328 11 + TSS region transcription start site region 86227
Tssr86228 9 77923665 to 77923688 23 + TSS region transcription start site region 86228
Tssr86229 9 77923712 to 77923740 28 + TSS region transcription start site region 86229
Tssr86230 9 77924424 to 77924435 11 + TSS region transcription start site region 86230
Tssr86231 9 77935376 to 77935382 6 + TSS region transcription start site region 86231
Tssr86232 9 77941234 to 77941244 10 + TSS region transcription start site region 86232
Tssr86233 9 77941253 to 77941270 17 + TSS region transcription start site region 86233
Tssr86234 9 77941274 to 77941303 29 + TSS region transcription start site region 86234
D9Wsu90e 9 77946625 to 77946874 249 DNA segment DNA segment, Chr 9, Wayne State University 90, expressed
Tssr86235 9 77957135 to 77957177 42 + TSS region transcription start site region 86235
Tssr86236 9 77960871 to 77960900 29 + TSS region transcription start site region 86236
Tssr86237 9 77960949 to 77960960 11 + TSS region transcription start site region 86237
Tssr86238 9 77960972 to 77960985 13 + TSS region transcription start site region 86238
Tssr86239 9 77962301 to 77962307 6 + TSS region transcription start site region 86239
Gm34771 9 77963203 to 77964894 1691 - lncRNA gene predicted gene, 34771
Tssr86240 9 77976762 to 77976773 11 + TSS region transcription start site region 86240
Tssr86241 9 77976842 to 77976854 12 + TSS region transcription start site region 86241
Tssr86242 9 77976882 to 77976893 11 + TSS region transcription start site region 86242
Tssr90618 9 77976911 to 77976913 2 - TSS region transcription start site region 90618
Tssr86243 9 77979830 to 77979841 11 + TSS region transcription start site region 86243
Tssr86244 9 77979879 to 77979892 13 + TSS region transcription start site region 86244
Tssr86245 9 77979918 to 77979925 7 + TSS region transcription start site region 86245
Tssr86246 9 77981506 to 77981524 18 + TSS region transcription start site region 86246
Tssr86247 9 77982680 to 77982687 7 + TSS region transcription start site region 86247
Tssr86248 9 77982688 to 77982698 10 + TSS region transcription start site region 86248
Tssr86249 9 77982721 to 77982730 9 + TSS region transcription start site region 86249
Tssr86250 9 77982856 to 77982863 7 + TSS region transcription start site region 86250
Tssr86251 9 77982999 to 77983033 34 + TSS region transcription start site region 86251
Tssr86252 9 77983154 to 77983165 11 + TSS region transcription start site region 86252
Tssr86253 9 77983517 to 77983547 30 + TSS region transcription start site region 86253
Tssr86254 9 77983571 to 77983582 11 + TSS region transcription start site region 86254
Tssr86255 9 77983782 to 77983800 18 + TSS region transcription start site region 86255
Gm34829 9 77992599 to 78002261 9662 + lincRNA gene predicted gene, 34829
Gm23609 9 78013972 to 78014098 126 - snoRNA gene predicted gene, 23609
Gm39375 9 78015018 to 78020703 5685 + lincRNA gene predicted gene, 39375
Gm47829 9 78027945 to 78028089 144 + pseudogene predicted gene, 47829
Tssr86256 9 78051938 to 78051948 10 + TSS region transcription start site region 86256
Gcm1 9 78051958 to 78065624 13666 + protein coding gene glial cells missing homolog 1
Gm8058 9 78068851 to 78069437 586 + pseudogene predicted gene 8058
Fbxo9 9 78081499 to 78109065 27566 - protein coding gene f-box protein 9
Cpgi22061 9 78107854 to 78109190 1336 CpG island CpG island 22061
Tssr90619 9 78108567 to 78108576 9 - TSS region transcription start site region 90619
Tssr90620 9 78108588 to 78108616 28 - TSS region transcription start site region 90620
Tssr90621 9 78108617 to 78108650 33 - TSS region transcription start site region 90621
Tssr90622 9 78109020 to 78109067 47 - TSS region transcription start site region 90622
Tssr86257 9 78109188 to 78109285 97 + TSS region transcription start site region 86257
Ick 9 78109192 to 78172107 62915 + protein coding gene intestinal cell kinase
Cpgi22062 9 78113123 to 78113629 506 CpG island CpG island 22062
Tssr86258 9 78113232 to 78113248 16 + TSS region transcription start site region 86258
Tssr86259 9 78113251 to 78113261 10 + TSS region transcription start site region 86259
Tssr86260 9 78113275 to 78113346 71 + TSS region transcription start site region 86260
Tssr86261 9 78113350 to 78113355 5 + TSS region transcription start site region 86261
Tssr86262 9 78113358 to 78113373 15 + TSS region transcription start site region 86262
Tssr86263 9 78113390 to 78113402 12 + TSS region transcription start site region 86263
Tssr86264 9 78167302 to 78167348 46 + TSS region transcription start site region 86264
Tssr86265 9 78168830 to 78168833 3 + TSS region transcription start site region 86265
Rn7sk 9 78175303 to 78175633 330 - SRP RNA gene RNA, 7SK, nuclear
Tssr86266 9 78175357 to 78175384 27 + TSS region transcription start site region 86266
Cpgi22063 9 78175368 to 78176776 1408 CpG island CpG island 22063
Tssr86267 9 78175898 to 78175922 24 + TSS region transcription start site region 86267
C920006O11Rik 9 78175914 to 78178879 2965 + lincRNA gene RIKEN cDNA C920006O11 gene
Tssr86268 9 78175929 to 78175953 24 + TSS region transcription start site region 86268
Cpgi22064 9 78191819 to 78192031 212 CpG island CpG island 22064
Gsta4 9 78191966 to 78209349 17383 + protein coding gene glutathione S-transferase, alpha 4
Tssr86269 9 78191972 to 78191999 27 + TSS region transcription start site region 86269
Tssr86270 9 78192006 to 78192023 17 + TSS region transcription start site region 86270
Tssr86271 9 78198119 to 78198141 22 + TSS region transcription start site region 86271
Tssr86272 9 78204273 to 78204287 14 + TSS region transcription start site region 86272
Tssr86273 9 78204291 to 78204307 16 + TSS region transcription start site region 86273
Tssr90623 9 78205965 to 78205992 27 - TSS region transcription start site region 90623
Tssr90624 9 78205996 to 78206029 33 - TSS region transcription start site region 90624
Tssr86274 9 78206016 to 78206029 13 + TSS region transcription start site region 86274
Tssr90625 9 78209254 to 78209334 80 - TSS region transcription start site region 90625
Tssr86275 9 78209276 to 78209299 23 + TSS region transcription start site region 86275
Gm3126 9 78213378 to 78214845 1467 - pseudogene predicted gene 3126
Tssr86276 9 78230644 to 78230664 20 + TSS region transcription start site region 86276
Tssr86277 9 78230665 to 78230675 10 + TSS region transcription start site region 86277
Gsta1 9 78230669 to 78242683 12014 + protein coding gene glutathione S-transferase, alpha 1 (Ya)
Tssr86278 9 78230679 to 78230691 12 + TSS region transcription start site region 86278
D9Mit177a 9 78243185 to 78243292 107 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 177a
Dppa5b 9 78245550 to 78246135 585 + pseudogene developmental pluripotency associated 5B
Tssr86279 9 78257120 to 78257126 6 + TSS region transcription start site region 86279
Gm3776 9 78257129 to 78269166 12037 + protein coding gene predicted gene 3776
D9Mit177b 9 78269668 to 78269775 107 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 177b
Dppa5c 9 78271998 to 78272583 585 + pseudogene developmental pluripotency associated 5C
Gm10639 9 78289928 to 78305525 15597 + protein coding gene predicted gene 10639
Omt2a 9 78311972 to 78314796 2824 - protein coding gene oocyte maturation, alpha
Gm8074 9 78321299 to 78322354 1055 - protein coding gene predicted gene 8074
D9Mit74 9 78323938 to 78324072 134 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 74
D9Dcr15 9 78326649 to 78326745 96 DNA segment DNA segment, Chr 9, Derry C. Roopenian 15
Omt2b 9 78328030 to 78329620 1590 + protein coding gene oocyte maturation, beta
Gsta2 9 78331018 to 78347192 16174 - protein coding gene glutathione S-transferase, alpha 2 (Yc2)
Tssr2946 9 78333305 to 78333307 2 + TSS region transcription start site region 2946
Tssr86280 9 78340488 to 78340491 3 + TSS region transcription start site region 86280
Tssr90626 9 78342582 to 78342599 17 - TSS region transcription start site region 90626
Tssr90627 9 78347127 to 78347135 8 - TSS region transcription start site region 90627
Tssr90628 9 78347140 to 78347157 17 - TSS region transcription start site region 90628
Tssr90629 9 78347162 to 78347190 28 - TSS region transcription start site region 90629
Tssr90630 9 78355743 to 78355776 33 - TSS region transcription start site region 90630
Tssr86281 9 78366047 to 78366074 27 + TSS region transcription start site region 86281
Dppa5a 9 78367052 to 78368177 1125 - protein coding gene developmental pluripotency associated 5A
Tssr90631 9 78368152 to 78368164 12 - TSS region transcription start site region 90631
Tssr90632 9 78368167 to 78368177 10 - TSS region transcription start site region 90632
Tssr90633 9 78368191 to 78368196 5 - TSS region transcription start site region 90633
Tssr86282 9 78369628 to 78369641 13 + TSS region transcription start site region 86282
Ooep 9 78376903 to 78378588 1685 - protein coding gene oocyte expressed protein
Tssr90634 9 78378148 to 78378160 12 - TSS region transcription start site region 90634
Tssr90635 9 78378169 to 78378199 30 - TSS region transcription start site region 90635
Tssr90636 9 78378525 to 78378536 11 - TSS region transcription start site region 90636
Tssr90637 9 78378546 to 78378562 16 - TSS region transcription start site region 90637
Tssr2947 9 78378581 to 78378582 1 - TSS region transcription start site region 2947
Tssr90638 9 78378660 to 78378705 45 - TSS region transcription start site region 90638
Gm8087 9 78388901 to 78389467 566 - pseudogene predicted gene 8087
4930542C12Rik 9 78394956 to 78396158 1202 - antisense lncRNA gene RIKEN cDNA 4930542C12 gene
Cpgi22065 9 78395306 to 78396501 1195 CpG island CpG island 22065
Ddx43 9 78395777 to 78423587 27810 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 43
Tssr86283 9 78395798 to 78395845 47 + TSS region transcription start site region 86283
Tssr86284 9 78395868 to 78395880 12 + TSS region transcription start site region 86284
Tssr90639 9 78396096 to 78396116 20 - TSS region transcription start site region 90639
D9Mit264 9 78415657 to 78415777 120 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 264
Gm8093 9 78427454 to 78429988 2534 + pseudogene predicted gene 8093
Cpgi22066 9 78427458 to 78427799 341 CpG island CpG island 22066
Tssr86285 9 78427686 to 78427707 21 + TSS region transcription start site region 86285
Tssr86286 9 78429060 to 78429076 16 + TSS region transcription start site region 86286
Cgas 9 78430526 to 78443237 12711 - protein coding gene cyclic GMP-AMP synthase
Cpgi22067 9 78442416 to 78443441 1025 CpG island CpG island 22067
Tssr90640 9 78442853 to 78442869 16 - TSS region transcription start site region 90640
Tssr90641 9 78443076 to 78443117 41 - TSS region transcription start site region 90641
Tssr90642 9 78443159 to 78443175 16 - TSS region transcription start site region 90642
Tssr90643 9 78443221 to 78443253 32 - TSS region transcription start site region 90643
Gm17324 9 78447865 to 78448786 921 - protein coding gene predicted gene, 17324
Mto1 9 78447870 to 78474165 26295 + protein coding gene mitochondrial tRNA translation optimization 1
Cpgi22068 9 78447980 to 78448924 944 CpG island CpG island 22068
Tssr86287 9 78448192 to 78448228 36 + TSS region transcription start site region 86287
Eef1a1 9 78478453 to 78481724 3271 - protein coding gene eukaryotic translation elongation factor 1 alpha 1
Gm26377 9 78478528 to 78478635 107 - miRNA gene predicted gene, 26377
Tssr90644 9 78479048 to 78479068 20 - TSS region transcription start site region 90644
Tssr86288 9 78479651 to 78479653 2 + TSS region transcription start site region 86288
Cpgi22069 9 78480728 to 78482282 1554 CpG island CpG island 22069
Tssr90645 9 78480736 to 78480782 46 - TSS region transcription start site region 90645
Tssr90646 9 78480798 to 78480818 20 - TSS region transcription start site region 90646
Tssr90647 9 78481657 to 78481714 57 - TSS region transcription start site region 90647
Tssr90648 9 78481724 to 78481751 27 - TSS region transcription start site region 90648
Tssr86289 9 78482013 to 78482036 23 + TSS region transcription start site region 86289
Tssr86290 9 78482061 to 78482077 16 + TSS region transcription start site region 86290
Tssr90649 9 78488116 to 78488147 31 - TSS region transcription start site region 90649
Tssr90650 9 78489141 to 78489166 25 - TSS region transcription start site region 90650
Tssr86291 9 78503511 to 78503529 18 + TSS region transcription start site region 86291
Tssr86292 9 78503935 to 78503960 25 + TSS region transcription start site region 86292
Gm47430 9 78520546 to 78522157 1611 + lincRNA gene predicted gene, 47430
Tssr86293 9 78520676 to 78520705 29 + TSS region transcription start site region 86293
Cpgi22070 9 78520714 to 78521122 408 CpG island CpG island 22070
Tssr86294 9 78520722 to 78520735 13 + TSS region transcription start site region 86294
Cpgi22071 9 78527408 to 78527585 177 CpG island CpG island 22071