Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:76302084-78152781

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191 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hcrtr2 9 76225880 to 76323578 97698 - protein coding gene hypocretin (orexin) receptor 2
Tssr86190 9 76312452 to 76312469 17 + TSS region transcription start site region 86190
Tssr86191 9 76312508 to 76312518 10 + TSS region transcription start site region 86191
Gm27234 9 76319577 to 76320846 1269 + antisense lncRNA gene predicted gene 27234
Cpgi22052 9 76323167 to 76323741 574 CpG island CpG island 22052
Tssr90575 9 76323559 to 76323586 27 - TSS region transcription start site region 90575
Tssr90576 9 76362117 to 76362128 11 - TSS region transcription start site region 90576
Tssr90577 9 76362164 to 76362176 12 - TSS region transcription start site region 90577
Skull13 9 76462664 to 76462846 182 QTL skull morphology 13
D9Mit8 9 76462664 to 76462846 182 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 8
Adip5 9 76462664 to 76462846 182 QTL adiposity 5
Mobq8 9 76462664 to 76462846 182 QTL multigenic obesity QTL 8
Fam83b 9 76490054 to 76567116 77062 - protein coding gene family with sequence similarity 83, member B
D9Mit266 9 76499817 to 76499941 124 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 266
Cpgi22053 9 76566926 to 76567533 607 CpG island CpG island 22053
Tssr90578 9 76567092 to 76567123 31 - TSS region transcription start site region 90578
Tssr90579 9 76567126 to 76567131 5 - TSS region transcription start site region 90579
Tssr90580 9 76581661 to 76581674 13 - TSS region transcription start site region 90580
Tssr90581 9 76582021 to 76582044 23 - TSS region transcription start site region 90581
Gm27156 9 76650381 to 76651134 753 + pseudogene predicted gene 27156
Gm27245 9 76658075 to 76658450 375 + pseudogene predicted gene 27245
Gm22938 9 76716628 to 76716747 119 - snoRNA gene predicted gene, 22938
Gm34158 9 76754762 to 76784854 30092 + lincRNA gene predicted gene, 34158
Gm27155 9 76760112 to 76761009 897 - pseudogene predicted gene 27155
Gm23791 9 76773232 to 76773524 292 - unclassified non-coding RNA gene predicted gene, 23791
Gm47800 9 76804116 to 76823062 18946 - lincRNA gene predicted gene, 47800
D9Mit261 9 76833945 to 76834094 149 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 261
Gm18486 9 76869186 to 76869483 297 - pseudogene predicted gene, 18486
Gm34210 9 76876152 to 76876265 113 - pseudogene predicted gene, 34210
Tinag 9 76951693 to 77045794 94101 - protein coding gene tubulointerstitial nephritis antigen
Gm27158 9 76989782 to 76990019 237 + pseudogene predicted gene 27158
Tssr90582 9 77045650 to 77045670 20 - TSS region transcription start site region 90582
Tssr90583 9 77045719 to 77045722 3 - TSS region transcription start site region 90583
Tssr90584 9 77045727 to 77045742 15 - TSS region transcription start site region 90584
Tssr90585 9 77045788 to 77045824 36 - TSS region transcription start site region 90585
Tssr90586 9 77046261 to 77046266 5 - TSS region transcription start site region 90586
Tssr86192 9 77046680 to 77046695 15 + TSS region transcription start site region 86192
Gm19541 9 77046682 to 77051953 5271 + lincRNA gene predicted gene, 19541
Tssr2944 9 77097052 to 77097082 30 + TSS region transcription start site region 2944
Gm5746 9 77097191 to 77099390 2199 + pseudogene predicted gene 5746
Mlip 9 77102084 to 77352781 250697 - protein coding gene muscular LMNA-interacting protein
Tssr90587 9 77128819 to 77128823 4 - TSS region transcription start site region 90587
Tssr90588 9 77200416 to 77200420 4 - TSS region transcription start site region 90588
Tssr90589 9 77223348 to 77223355 7 - TSS region transcription start site region 90589
Tssr90590 9 77229428 to 77229440 12 - TSS region transcription start site region 90590
Tssr90591 9 77229461 to 77229471 10 - TSS region transcription start site region 90591
Tssr90592 9 77230386 to 77230403 17 - TSS region transcription start site region 90592
Tssr90593 9 77230463 to 77230476 13 - TSS region transcription start site region 90593
Tssr90594 9 77251829 to 77251838 9 - TSS region transcription start site region 90594
Tssr90595 9 77251842 to 77251859 17 - TSS region transcription start site region 90595
Tssr90596 9 77251871 to 77251880 9 - TSS region transcription start site region 90596
Tssr90597 9 77252066 to 77252076 10 - TSS region transcription start site region 90597
Tssr90598 9 77261434 to 77261452 18 - TSS region transcription start site region 90598
Tssr90599 9 77261462 to 77261463 1 - TSS region transcription start site region 90599
Tssr90600 9 77261499 to 77261507 8 - TSS region transcription start site region 90600
D9Mit319 9 77288629 to 77288777 148 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology-319
Gm27210 9 77294838 to 77295239 401 - pseudogene predicted gene 27210
Gm38254 9 77302067 to 77303075 1008 - unclassified gene predicted gene, 38254
Tssr86193 9 77313721 to 77313725 4 + TSS region transcription start site region 86193
Tssr90601 9 77323828 to 77323832 4 - TSS region transcription start site region 90601
Tssr90602 9 77347768 to 77347782 14 - TSS region transcription start site region 90602
Tssr90603 9 77347787 to 77347815 28 - TSS region transcription start site region 90603
Tssr90604 9 77347816 to 77347887 71 - TSS region transcription start site region 90604
Tssr90605 9 77347889 to 77347906 17 - TSS region transcription start site region 90605
4930590H14Rik 9 77357352 to 77357902 550 + unclassified gene RIKEN cDNA 4930590H14 gene
5730403I07Rik 9 77366412 to 77399416 33004 - lincRNA gene RIKEN cDNA 5730403I07 gene
Tssr90606 9 77399308 to 77399353 45 - TSS region transcription start site region 90606
D9Ertd133e 9 77423699 to 77423913 214 DNA segment DNA segment, Chr 9, ERATO Doi 133, expressed
Lrrc1 9 77430823 to 77544852 114029 - protein coding gene leucine rich repeat containing 1
D9Mit354 9 77434452 to 77434553 101 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 354
Tssr90607 9 77435129 to 77435158 29 - TSS region transcription start site region 90607
Tssr90608 9 77469947 to 77469963 16 - TSS region transcription start site region 90608
Cpgi22054 9 77469960 to 77470136 176 CpG island CpG island 22054
Tssr90609 9 77535508 to 77535519 11 - TSS region transcription start site region 90609
Cpgi22055 9 77543648 to 77545408 1760 CpG island CpG island 22055
Tssr90610 9 77544729 to 77544754 25 - TSS region transcription start site region 90610
Tssr90611 9 77544760 to 77544772 12 - TSS region transcription start site region 90611
Tssr90612 9 77544783 to 77544813 30 - TSS region transcription start site region 90612
Tssr90613 9 77544829 to 77544862 33 - TSS region transcription start site region 90613
Tssr90614 9 77544877 to 77544914 37 - TSS region transcription start site region 90614
Gm19569 9 77544959 to 77546467 1508 + unclassified non-coding RNA gene predicted gene, 19569
Gm21013 9 77552626 to 77553810 1184 - pseudogene predicted gene, 21013
Gm25250 9 77577714 to 77577789 75 + miRNA gene predicted gene, 25250
D9Dcr14 9 77593888 to 77593991 103 DNA segment DNA segment, Chr 9, Derry C. Roopenian 14
D9Mit306 9 77605380 to 77605484 104 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 306
Tssr86194 9 77636469 to 77636480 11 + TSS region transcription start site region 86194
Tssr86195 9 77636494 to 77636528 34 + TSS region transcription start site region 86195
Tssr86196 9 77636536 to 77636547 11 + TSS region transcription start site region 86196
Tssr86197 9 77636575 to 77636610 35 + TSS region transcription start site region 86197
Tssr86198 9 77636619 to 77636620 1 + TSS region transcription start site region 86198
Tssr86199 9 77636621 to 77636635 14 + TSS region transcription start site region 86199
Tssr86200 9 77636636 to 77636711 75 + TSS region transcription start site region 86200
Tssr86201 9 77636713 to 77636732 19 + TSS region transcription start site region 86201
Klhl31 9 77636732 to 77660125 23393 + protein coding gene kelch-like 31
Tssr86202 9 77652688 to 77652694 6 + TSS region transcription start site region 86202
Cpgi22056 9 77654799 to 77655958 1159 CpG island CpG island 22056
Tssr86203 9 77656665 to 77656685 20 + TSS region transcription start site region 86203
Tssr86204 9 77657394 to 77657399 5 + TSS region transcription start site region 86204
Gm47790 9 77692197 to 77730279 38082 - lincRNA gene predicted gene, 47790
Gm47789 9 77706558 to 77707882 1324 - lincRNA gene predicted gene, 47789
Tssr90615 9 77707847 to 77707871 24 - TSS region transcription start site region 90615
Gm47795 9 77730737 to 77733268 2531 - lincRNA gene predicted gene, 47795
Tssr90616 9 77733283 to 77733289 6 - TSS region transcription start site region 90616
Cpgi22057 9 77750268 to 77751352 1084 CpG island CpG island 22057
Cpgi22058 9 77754387 to 77755221 834 CpG island CpG island 22058
Tssr86205 9 77754526 to 77754541 15 + TSS region transcription start site region 86205
Gclc 9 77754535 to 77794485 39950 + protein coding gene glutamate-cysteine ligase, catalytic subunit
Tssr86206 9 77754548 to 77754620 72 + TSS region transcription start site region 86206
Tssr86207 9 77784294 to 77784309 15 + TSS region transcription start site region 86207
Tssr86208 9 77784653 to 77784656 3 + TSS region transcription start site region 86208
Tssr86209 9 77784692 to 77784704 12 + TSS region transcription start site region 86209
Gm34654 9 77807036 to 77809793 2757 - lincRNA gene predicted gene, 34654
Gm47818 9 77836030 to 77848111 12081 + lincRNA gene predicted gene, 47818
Tssr86210 9 77838830 to 77838837 7 + TSS region transcription start site region 86210
Tssr86211 9 77838848 to 77838855 7 + TSS region transcription start site region 86211
Tssr86212 9 77838867 to 77838879 12 + TSS region transcription start site region 86212
Tssr86213 9 77838892 to 77838894 2 + TSS region transcription start site region 86213
Gm19572 9 77851708 to 77852045 337 + pseudogene predicted gene, 19572
Gm47824 9 77901529 to 77902619 1090 + unclassified gene predicted gene, 47824
Cpgi22059 9 77910365 to 77911078 713 CpG island CpG island 22059
Cpgi22060 9 77917095 to 77918158 1063 CpG island CpG island 22060
Tssr90617 9 77917144 to 77917164 20 - TSS region transcription start site region 90617
Tssr86214 9 77917185 to 77917207 22 + TSS region transcription start site region 86214
Tssr86215 9 77917208 to 77917223 15 + TSS region transcription start site region 86215
Tssr86216 9 77917248 to 77917257 9 + TSS region transcription start site region 86216
Elovl5 9 77917365 to 77984519 67154 + protein coding gene ELOVL family member 5, elongation of long chain fatty acids (yeast)
Tssr86217 9 77917375 to 77917386 11 + TSS region transcription start site region 86217
Tssr86218 9 77917397 to 77917453 56 + TSS region transcription start site region 86218
Tssr2945 9 77917462 to 77917473 11 + TSS region transcription start site region 2945
Tssr86219 9 77920178 to 77920187 9 + TSS region transcription start site region 86219
Tssr86220 9 77920400 to 77920403 3 + TSS region transcription start site region 86220
Tssr86221 9 77921476 to 77921481 5 + TSS region transcription start site region 86221
Tssr86222 9 77921485 to 77921500 15 + TSS region transcription start site region 86222
Tssr86223 9 77921522 to 77921527 5 + TSS region transcription start site region 86223
Tssr86224 9 77921721 to 77921746 25 + TSS region transcription start site region 86224
Tssr86225 9 77921908 to 77921919 11 + TSS region transcription start site region 86225
Tssr86226 9 77923268 to 77923272 4 + TSS region transcription start site region 86226
Tssr86227 9 77923317 to 77923328 11 + TSS region transcription start site region 86227
Tssr86228 9 77923665 to 77923688 23 + TSS region transcription start site region 86228
Tssr86229 9 77923712 to 77923740 28 + TSS region transcription start site region 86229
Tssr86230 9 77924424 to 77924435 11 + TSS region transcription start site region 86230
Tssr86231 9 77935376 to 77935382 6 + TSS region transcription start site region 86231
Tssr86232 9 77941234 to 77941244 10 + TSS region transcription start site region 86232
Tssr86233 9 77941253 to 77941270 17 + TSS region transcription start site region 86233
Tssr86234 9 77941274 to 77941303 29 + TSS region transcription start site region 86234
D9Wsu90e 9 77946625 to 77946874 249 DNA segment DNA segment, Chr 9, Wayne State University 90, expressed
Tssr86235 9 77957135 to 77957177 42 + TSS region transcription start site region 86235
Tssr86236 9 77960871 to 77960900 29 + TSS region transcription start site region 86236
Tssr86237 9 77960949 to 77960960 11 + TSS region transcription start site region 86237
Tssr86238 9 77960972 to 77960985 13 + TSS region transcription start site region 86238
Tssr86239 9 77962301 to 77962307 6 + TSS region transcription start site region 86239
Gm34771 9 77963203 to 77964894 1691 - lncRNA gene predicted gene, 34771
Tssr86240 9 77976762 to 77976773 11 + TSS region transcription start site region 86240
Tssr86241 9 77976842 to 77976854 12 + TSS region transcription start site region 86241
Tssr86242 9 77976882 to 77976893 11 + TSS region transcription start site region 86242
Tssr90618 9 77976911 to 77976913 2 - TSS region transcription start site region 90618
Tssr86243 9 77979830 to 77979841 11 + TSS region transcription start site region 86243
Tssr86244 9 77979879 to 77979892 13 + TSS region transcription start site region 86244
Tssr86245 9 77979918 to 77979925 7 + TSS region transcription start site region 86245
Tssr86246 9 77981506 to 77981524 18 + TSS region transcription start site region 86246
Tssr86247 9 77982680 to 77982687 7 + TSS region transcription start site region 86247
Tssr86248 9 77982688 to 77982698 10 + TSS region transcription start site region 86248
Tssr86249 9 77982721 to 77982730 9 + TSS region transcription start site region 86249
Tssr86250 9 77982856 to 77982863 7 + TSS region transcription start site region 86250
Tssr86251 9 77982999 to 77983033 34 + TSS region transcription start site region 86251
Tssr86252 9 77983154 to 77983165 11 + TSS region transcription start site region 86252
Tssr86253 9 77983517 to 77983547 30 + TSS region transcription start site region 86253
Tssr86254 9 77983571 to 77983582 11 + TSS region transcription start site region 86254
Tssr86255 9 77983782 to 77983800 18 + TSS region transcription start site region 86255
Gm34829 9 77992599 to 78002261 9662 + lincRNA gene predicted gene, 34829
Gm23609 9 78013972 to 78014098 126 - snoRNA gene predicted gene, 23609
Gm39375 9 78015018 to 78020703 5685 + lincRNA gene predicted gene, 39375
Gm47829 9 78027945 to 78028089 144 + pseudogene predicted gene, 47829
Tssr86256 9 78051938 to 78051948 10 + TSS region transcription start site region 86256
Gcm1 9 78051958 to 78065624 13666 + protein coding gene glial cells missing homolog 1
Gm8058 9 78068851 to 78069437 586 + pseudogene predicted gene 8058
Fbxo9 9 78081499 to 78109065 27566 - protein coding gene f-box protein 9
Cpgi22061 9 78107854 to 78109190 1336 CpG island CpG island 22061
Tssr90619 9 78108567 to 78108576 9 - TSS region transcription start site region 90619
Tssr90620 9 78108588 to 78108616 28 - TSS region transcription start site region 90620
Tssr90621 9 78108617 to 78108650 33 - TSS region transcription start site region 90621
Tssr90622 9 78109020 to 78109067 47 - TSS region transcription start site region 90622
Tssr86257 9 78109188 to 78109285 97 + TSS region transcription start site region 86257
Ick 9 78109192 to 78172107 62915 + protein coding gene intestinal cell kinase
Cpgi22062 9 78113123 to 78113629 506 CpG island CpG island 22062
Tssr86258 9 78113232 to 78113248 16 + TSS region transcription start site region 86258
Tssr86259 9 78113251 to 78113261 10 + TSS region transcription start site region 86259
Tssr86260 9 78113275 to 78113346 71 + TSS region transcription start site region 86260
Tssr86261 9 78113350 to 78113355 5 + TSS region transcription start site region 86261
Tssr86262 9 78113358 to 78113373 15 + TSS region transcription start site region 86262
Tssr86263 9 78113390 to 78113402 12 + TSS region transcription start site region 86263