Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:75580364-80506729

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540 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
l9Rl5 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 5
l9Rl1 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 1
l9Rl2 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 2
l9Rl3 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 3
l9Rl8 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 8
l9Rl7 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 7
l9Rl6 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 6
l9Rl4 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 4
Ksc1 9 75501755 to 80091050 4589295 QTL keratinocyte stem cell locus 1
Tmod2 9 75565621 to 75611325 45704 - protein coding gene tropomodulin 2
Gm48822 9 75582739 to 75585109 2370 - unclassified gene predicted gene, 48822
Tssr90552 9 75597643 to 75597656 13 - TSS region transcription start site region 90552
Tssr90553 9 75597674 to 75597712 38 - TSS region transcription start site region 90553
Tssr90554 9 75597717 to 75597738 21 - TSS region transcription start site region 90554
Tssr90555 9 75599089 to 75599104 15 - TSS region transcription start site region 90555
Tssr90556 9 75599108 to 75599118 10 - TSS region transcription start site region 90556
Tssr90557 9 75599124 to 75599141 17 - TSS region transcription start site region 90557
Cpgi22048 9 75610550 to 75611683 1133 CpG island CpG island 22048
Tssr90558 9 75611076 to 75611102 26 - TSS region transcription start site region 90558
Tssr90559 9 75611104 to 75611182 78 - TSS region transcription start site region 90559
Tssr90560 9 75611216 to 75611223 7 - TSS region transcription start site region 90560
Tssr90561 9 75611278 to 75611295 17 - TSS region transcription start site region 90561
Tssr90562 9 75611308 to 75611334 26 - TSS region transcription start site region 90562
Tssr90563 9 75611340 to 75611359 19 - TSS region transcription start site region 90563
D9Mit235 9 75621814 to 75621923 109 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 235
Cpgi22049 9 75624978 to 75626531 1553 CpG island CpG island 22049
Tssr86181 9 75625399 to 75625420 21 + TSS region transcription start site region 86181
Tssr86182 9 75625707 to 75625770 63 + TSS region transcription start site region 86182
Lysmd2 9 75625741 to 75637771 12030 + protein coding gene LysM, putative peptidoglycan-binding, domain containing 2
Tssr86183 9 75625842 to 75625885 43 + TSS region transcription start site region 86183
Tssr86184 9 75625967 to 75625981 14 + TSS region transcription start site region 86184
Tssr86185 9 75626136 to 75626179 43 + TSS region transcription start site region 86185
D9Dcr12 9 75640183 to 75640293 110 DNA segment DNA segment, Chr 9, Derry C. Roopenian 12
D9Mit263 9 75640192 to 75640288 96 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 263
Tssr90564 9 75642111 to 75642123 12 - TSS region transcription start site region 90564
Tssr90565 9 75642244 to 75642259 15 - TSS region transcription start site region 90565
Tssr90566 9 75642310 to 75642326 16 - TSS region transcription start site region 90566
Scg3 9 75643189 to 75684056 40867 - protein coding gene secretogranin III
Tssr90567 9 75643221 to 75643237 16 - TSS region transcription start site region 90567
Gm37871 9 75666652 to 75667339 687 + unclassified gene predicted gene, 37871
Tssr90568 9 75683349 to 75683357 8 - TSS region transcription start site region 90568
Cpgi22050 9 75683640 to 75684317 677 CpG island CpG island 22050
Tssr90569 9 75683847 to 75683855 8 - TSS region transcription start site region 90569
Tssr90570 9 75683909 to 75683914 5 - TSS region transcription start site region 90570
Tssr90571 9 75683971 to 75683989 18 - TSS region transcription start site region 90571
Tssr90572 9 75683992 to 75684046 54 - TSS region transcription start site region 90572
Tssr90573 9 75684074 to 75684083 9 - TSS region transcription start site region 90573
Gm3671 9 75693653 to 75694659 1006 - pseudogene predicted gene 3671
Gm39373 9 75763525 to 75769160 5635 + lncRNA gene predicted gene, 39373
Tssr86186 9 75775355 to 75775378 23 + TSS region transcription start site region 86186
In(9Bmp5-Myo6)5Rl 9 75775364 to 80311729 4536365 chromosomal inversion inversion, Chr 9, Russell 5
Bmp5 9 75775364 to 75900310 124946 + protein coding gene bone morphogenetic protein 5
Tssr86187 9 75775668 to 75775687 19 + TSS region transcription start site region 86187
Tssr86188 9 75775694 to 75775715 21 + TSS region transcription start site region 86188
Gm47723 9 75876260 to 75877713 1453 + unclassified gene predicted gene, 47723
Gm26903 9 75897843 to 76015192 117349 - antisense lncRNA gene predicted gene, 26903
Gm44355 9 75911422 to 75911525 103 + miRNA gene predicted gene, 44355
Gm34005 9 75964204 to 75964485 281 + pseudogene predicted gene, 34005
Gm25300 9 75970944 to 75971027 83 - snRNA gene predicted gene, 25300
Tssr90574 9 75971025 to 75971031 6 - TSS region transcription start site region 90574
Hmgcll1 9 76014855 to 76136350 121495 + protein coding gene 3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1
Cpgi22051 9 76014862 to 76015252 390 CpG island CpG island 22051
Tssr86189 9 76014954 to 76015020 66 + TSS region transcription start site region 86189
D9Mit124 9 76066526 to 76066652 126 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 124
Gm38083 9 76067449 to 76070946 3497 + unclassified gene predicted gene, 38083
D9Mit270 9 76117105 to 76117252 147 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 270
Stheal9 9 76117105 to 76117252 147 QTL soft tissue heal 9
Fembrs6 9 76117105 to 76117252 147 QTL femur breaking strength 6
Gfral 9 76164102 to 76213657 49555 - protein coding gene GDNF family receptor alpha like
Hcrtr2 9 76225880 to 76323578 97698 - protein coding gene hypocretin (orexin) receptor 2
D9Mit122 9 76234058 to 76234202 144 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 122
D9Mit108 9 76234067 to 76234326 259 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 108
D9Dcr13 9 76284406 to 76284501 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 13
Tssr86190 9 76312452 to 76312469 17 + TSS region transcription start site region 86190
Tssr86191 9 76312508 to 76312518 10 + TSS region transcription start site region 86191
Gm27234 9 76319577 to 76320846 1269 + antisense lncRNA gene predicted gene 27234
Cpgi22052 9 76323167 to 76323741 574 CpG island CpG island 22052
Tssr90575 9 76323559 to 76323586 27 - TSS region transcription start site region 90575
Tssr90576 9 76362117 to 76362128 11 - TSS region transcription start site region 90576
Tssr90577 9 76362164 to 76362176 12 - TSS region transcription start site region 90577
Mobq8 9 76462664 to 76462846 182 QTL multigenic obesity QTL 8
Skull13 9 76462664 to 76462846 182 QTL skull morphology 13
Adip5 9 76462664 to 76462846 182 QTL adiposity 5
D9Mit8 9 76462664 to 76462846 182 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 8
Fam83b 9 76490054 to 76567116 77062 - protein coding gene family with sequence similarity 83, member B
D9Mit266 9 76499817 to 76499941 124 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 266
Cpgi22053 9 76566926 to 76567533 607 CpG island CpG island 22053
Tssr90578 9 76567092 to 76567123 31 - TSS region transcription start site region 90578
Tssr90579 9 76567126 to 76567131 5 - TSS region transcription start site region 90579
Tssr90580 9 76581661 to 76581674 13 - TSS region transcription start site region 90580
Tssr90581 9 76582021 to 76582044 23 - TSS region transcription start site region 90581
Gm27156 9 76650381 to 76651134 753 + pseudogene predicted gene 27156
Gm27245 9 76658075 to 76658450 375 + pseudogene predicted gene 27245
Gm22938 9 76716628 to 76716747 119 - snoRNA gene predicted gene, 22938
Gm34158 9 76754762 to 76784854 30092 + lincRNA gene predicted gene, 34158
Gm27155 9 76760112 to 76761009 897 - pseudogene predicted gene 27155
Gm23791 9 76773232 to 76773524 292 - unclassified non-coding RNA gene predicted gene, 23791
Gm47800 9 76804116 to 76823062 18946 - lincRNA gene predicted gene, 47800
D9Mit261 9 76833945 to 76834094 149 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 261
Gm18486 9 76869186 to 76869483 297 - pseudogene predicted gene, 18486
Gm34210 9 76876152 to 76876265 113 - pseudogene predicted gene, 34210
Tinag 9 76951693 to 77045794 94101 - protein coding gene tubulointerstitial nephritis antigen
Gm27158 9 76989782 to 76990019 237 + pseudogene predicted gene 27158
Tssr90582 9 77045650 to 77045670 20 - TSS region transcription start site region 90582
Tssr90583 9 77045719 to 77045722 3 - TSS region transcription start site region 90583
Tssr90584 9 77045727 to 77045742 15 - TSS region transcription start site region 90584
Tssr90585 9 77045788 to 77045824 36 - TSS region transcription start site region 90585
Tssr90586 9 77046261 to 77046266 5 - TSS region transcription start site region 90586
Tssr86192 9 77046680 to 77046695 15 + TSS region transcription start site region 86192
Gm19541 9 77046682 to 77051953 5271 + lincRNA gene predicted gene, 19541
Tssr2944 9 77097052 to 77097082 30 + TSS region transcription start site region 2944
Gm5746 9 77097191 to 77099390 2199 + pseudogene predicted gene 5746
Mlip 9 77102084 to 77352781 250697 - protein coding gene muscular LMNA-interacting protein
Tssr90587 9 77128819 to 77128823 4 - TSS region transcription start site region 90587
Tssr90588 9 77200416 to 77200420 4 - TSS region transcription start site region 90588
Tssr90589 9 77223348 to 77223355 7 - TSS region transcription start site region 90589
Tssr90590 9 77229428 to 77229440 12 - TSS region transcription start site region 90590
Tssr90591 9 77229461 to 77229471 10 - TSS region transcription start site region 90591
Tssr90592 9 77230386 to 77230403 17 - TSS region transcription start site region 90592
Tssr90593 9 77230463 to 77230476 13 - TSS region transcription start site region 90593
Tssr90594 9 77251829 to 77251838 9 - TSS region transcription start site region 90594
Tssr90595 9 77251842 to 77251859 17 - TSS region transcription start site region 90595
Tssr90596 9 77251871 to 77251880 9 - TSS region transcription start site region 90596
Tssr90597 9 77252066 to 77252076 10 - TSS region transcription start site region 90597
Tssr90598 9 77261434 to 77261452 18 - TSS region transcription start site region 90598
Tssr90599 9 77261462 to 77261463 1 - TSS region transcription start site region 90599
Tssr90600 9 77261499 to 77261507 8 - TSS region transcription start site region 90600
D9Mit319 9 77288629 to 77288777 148 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology-319
Gm27210 9 77294838 to 77295239 401 - pseudogene predicted gene 27210
Gm38254 9 77302067 to 77303075 1008 - unclassified gene predicted gene, 38254
Tssr86193 9 77313721 to 77313725 4 + TSS region transcription start site region 86193
Tssr90601 9 77323828 to 77323832 4 - TSS region transcription start site region 90601
Tssr90602 9 77347768 to 77347782 14 - TSS region transcription start site region 90602
Tssr90603 9 77347787 to 77347815 28 - TSS region transcription start site region 90603
Tssr90604 9 77347816 to 77347887 71 - TSS region transcription start site region 90604
Tssr90605 9 77347889 to 77347906 17 - TSS region transcription start site region 90605
4930590H14Rik 9 77357352 to 77357902 550 + unclassified gene RIKEN cDNA 4930590H14 gene
5730403I07Rik 9 77366412 to 77399416 33004 - lincRNA gene RIKEN cDNA 5730403I07 gene
Tssr90606 9 77399308 to 77399353 45 - TSS region transcription start site region 90606
D9Ertd133e 9 77423699 to 77423913 214 DNA segment DNA segment, Chr 9, ERATO Doi 133, expressed
Lrrc1 9 77430823 to 77544852 114029 - protein coding gene leucine rich repeat containing 1
D9Mit354 9 77434452 to 77434553 101 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 354
Tssr90607 9 77435129 to 77435158 29 - TSS region transcription start site region 90607
Tssr90608 9 77469947 to 77469963 16 - TSS region transcription start site region 90608
Cpgi22054 9 77469960 to 77470136 176 CpG island CpG island 22054
Tssr90609 9 77535508 to 77535519 11 - TSS region transcription start site region 90609
Cpgi22055 9 77543648 to 77545408 1760 CpG island CpG island 22055
Tssr90610 9 77544729 to 77544754 25 - TSS region transcription start site region 90610
Tssr90611 9 77544760 to 77544772 12 - TSS region transcription start site region 90611
Tssr90612 9 77544783 to 77544813 30 - TSS region transcription start site region 90612
Tssr90613 9 77544829 to 77544862 33 - TSS region transcription start site region 90613
Tssr90614 9 77544877 to 77544914 37 - TSS region transcription start site region 90614
Gm19569 9 77544959 to 77546467 1508 + unclassified non-coding RNA gene predicted gene, 19569
Gm21013 9 77552626 to 77553810 1184 - pseudogene predicted gene, 21013
Gm25250 9 77577714 to 77577789 75 + miRNA gene predicted gene, 25250
D9Dcr14 9 77593888 to 77593991 103 DNA segment DNA segment, Chr 9, Derry C. Roopenian 14
D9Mit306 9 77605380 to 77605484 104 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 306
Tssr86194 9 77636469 to 77636480 11 + TSS region transcription start site region 86194
Tssr86195 9 77636494 to 77636528 34 + TSS region transcription start site region 86195
Tssr86196 9 77636536 to 77636547 11 + TSS region transcription start site region 86196
Tssr86197 9 77636575 to 77636610 35 + TSS region transcription start site region 86197
Tssr86198 9 77636619 to 77636620 1 + TSS region transcription start site region 86198
Tssr86199 9 77636621 to 77636635 14 + TSS region transcription start site region 86199
Tssr86200 9 77636636 to 77636711 75 + TSS region transcription start site region 86200
Tssr86201 9 77636713 to 77636732 19 + TSS region transcription start site region 86201
Klhl31 9 77636732 to 77660125 23393 + protein coding gene kelch-like 31
Tssr86202 9 77652688 to 77652694 6 + TSS region transcription start site region 86202
Cpgi22056 9 77654799 to 77655958 1159 CpG island CpG island 22056
Tssr86203 9 77656665 to 77656685 20 + TSS region transcription start site region 86203
Tssr86204 9 77657394 to 77657399 5 + TSS region transcription start site region 86204
Gm47790 9 77692197 to 77730279 38082 - lincRNA gene predicted gene, 47790
Gm47789 9 77706558 to 77707882 1324 - lincRNA gene predicted gene, 47789
Tssr90615 9 77707847 to 77707871 24 - TSS region transcription start site region 90615
Gm47795 9 77730737 to 77733268 2531 - lincRNA gene predicted gene, 47795
Tssr90616 9 77733283 to 77733289 6 - TSS region transcription start site region 90616
Cpgi22057 9 77750268 to 77751352 1084 CpG island CpG island 22057
Cpgi22058 9 77754387 to 77755221 834 CpG island CpG island 22058
Tssr86205 9 77754526 to 77754541 15 + TSS region transcription start site region 86205
Gclc 9 77754535 to 77794485 39950 + protein coding gene glutamate-cysteine ligase, catalytic subunit
Tssr86206 9 77754548 to 77754620 72 + TSS region transcription start site region 86206
Tssr86207 9 77784294 to 77784309 15 + TSS region transcription start site region 86207
Tssr86208 9 77784653 to 77784656 3 + TSS region transcription start site region 86208
Tssr86209 9 77784692 to 77784704 12 + TSS region transcription start site region 86209
Gm34654 9 77807036 to 77809793 2757 - lincRNA gene predicted gene, 34654
Gm47818 9 77836030 to 77848111 12081 + lincRNA gene predicted gene, 47818
Tssr86210 9 77838830 to 77838837 7 + TSS region transcription start site region 86210
Tssr86211 9 77838848 to 77838855 7 + TSS region transcription start site region 86211
Tssr86212 9 77838867 to 77838879 12 + TSS region transcription start site region 86212
Tssr86213 9 77838892 to 77838894 2 + TSS region transcription start site region 86213
Gm19572 9 77851708 to 77852045 337 + pseudogene predicted gene, 19572
Gm47824 9 77901529 to 77902619 1090 + unclassified gene predicted gene, 47824
Cpgi22059 9 77910365 to 77911078 713 CpG island CpG island 22059
Cpgi22060 9 77917095 to 77918158 1063 CpG island CpG island 22060
Tssr90617 9 77917144 to 77917164 20 - TSS region transcription start site region 90617
Tssr86214 9 77917185 to 77917207 22 + TSS region transcription start site region 86214
Tssr86215 9 77917208 to 77917223 15 + TSS region transcription start site region 86215
Tssr86216 9 77917248 to 77917257 9 + TSS region transcription start site region 86216
Elovl5 9 77917365 to 77984519 67154 + protein coding gene ELOVL family member 5, elongation of long chain fatty acids (yeast)
Tssr86217 9 77917375 to 77917386 11 + TSS region transcription start site region 86217
Tssr86218 9 77917397 to 77917453 56 + TSS region transcription start site region 86218