Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:75397674-75797712

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mapk6 9 75386782 to 75410019 23237 - protein coding gene mitogen-activated protein kinase 6
Tssr86167 9 75407018 to 75407028 10 + TSS region transcription start site region 86167
Tssr90539 9 75407903 to 75407907 4 - TSS region transcription start site region 90539
Tssr86168 9 75408054 to 75408079 25 + TSS region transcription start site region 86168
Tssr86169 9 75408086 to 75408099 13 + TSS region transcription start site region 86169
Tssr86170 9 75408115 to 75408124 9 + TSS region transcription start site region 86170
Tssr86171 9 75408324 to 75408328 4 + TSS region transcription start site region 86171
Cpgi22045 9 75408939 to 75410517 1578 CpG island CpG island 22045
Tssr90540 9 75409282 to 75409336 54 - TSS region transcription start site region 90540
Tssr90541 9 75409352 to 75409383 31 - TSS region transcription start site region 90541
Tssr90542 9 75409591 to 75409643 52 - TSS region transcription start site region 90542
Tssr90543 9 75409951 to 75410039 88 - TSS region transcription start site region 90543
Tssr86172 9 75410145 to 75410176 31 + TSS region transcription start site region 86172
4933433G15Rik 9 75410184 to 75415537 5353 + lincRNA gene RIKEN cDNA 4933433G15 gene
Tssr86173 9 75410203 to 75410217 14 + TSS region transcription start site region 86173
Tssr2942 9 75410209 to 75410220 11 - TSS region transcription start site region 2942
Tssr90544 9 75422401 to 75422445 44 - TSS region transcription start site region 90544
Tssr86174 9 75434343 to 75434354 11 + TSS region transcription start site region 86174
Tssr86175 9 75434437 to 75434442 5 + TSS region transcription start site region 86175
Tssr86176 9 75438125 to 75438130 5 + TSS region transcription start site region 86176
Cpgi22046 9 75441188 to 75442148 960 CpG island CpG island 22046
Tssr86177 9 75441478 to 75441489 11 + TSS region transcription start site region 86177
Tssr86178 9 75441518 to 75441575 57 + TSS region transcription start site region 86178
Leo1 9 75441524 to 75466432 24908 + protein coding gene Leo1, Paf1/RNA polymerase II complex component
Tssr86179 9 75468559 to 75468585 26 + TSS region transcription start site region 86179
Tssr86180 9 75468589 to 75468597 8 + TSS region transcription start site region 86180
Gm7972 9 75468616 to 75486681 18065 + pseudogene predicted gene 7972
Tmod3 9 75497784 to 75559687 61903 - protein coding gene tropomodulin 3
Ksc1 9 75501755 to 80091050 4589295 QTL keratinocyte stem cell locus 1
D9Mit262 9 75501755 to 75501893 138 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 262
Gm48789 9 75520374 to 75520502 128 - pseudogene predicted gene, 48789
Tssr2943 9 75538250 to 75538254 4 + TSS region transcription start site region 2943
Tssr90545 9 75541693 to 75541721 28 - TSS region transcription start site region 90545
Cpgi22047 9 75558989 to 75559843 854 CpG island CpG island 22047
Tssr90546 9 75559583 to 75559594 11 - TSS region transcription start site region 90546
Tssr90547 9 75559604 to 75559665 61 - TSS region transcription start site region 90547
Tmod2 9 75565621 to 75611325 45704 - protein coding gene tropomodulin 2
Tssr90548 9 75566726 to 75566731 5 - TSS region transcription start site region 90548
Tssr90549 9 75567321 to 75567354 33 - TSS region transcription start site region 90549
Tssr90550 9 75567488 to 75567502 14 - TSS region transcription start site region 90550
Tssr90551 9 75572800 to 75572804 4 - TSS region transcription start site region 90551
Gm48822 9 75582739 to 75585109 2370 - unclassified gene predicted gene, 48822
Tssr90552 9 75597643 to 75597656 13 - TSS region transcription start site region 90552
Tssr90553 9 75597674 to 75597712 38 - TSS region transcription start site region 90553
Tssr90554 9 75597717 to 75597738 21 - TSS region transcription start site region 90554
Tssr90555 9 75599089 to 75599104 15 - TSS region transcription start site region 90555
Tssr90556 9 75599108 to 75599118 10 - TSS region transcription start site region 90556
Tssr90557 9 75599124 to 75599141 17 - TSS region transcription start site region 90557
Cpgi22048 9 75610550 to 75611683 1133 CpG island CpG island 22048
Tssr90558 9 75611076 to 75611102 26 - TSS region transcription start site region 90558
Tssr90559 9 75611104 to 75611182 78 - TSS region transcription start site region 90559
Tssr90560 9 75611216 to 75611223 7 - TSS region transcription start site region 90560
Tssr90561 9 75611278 to 75611295 17 - TSS region transcription start site region 90561
Tssr90562 9 75611308 to 75611334 26 - TSS region transcription start site region 90562
Tssr90563 9 75611340 to 75611359 19 - TSS region transcription start site region 90563
D9Mit235 9 75621814 to 75621923 109 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 235
Cpgi22049 9 75624978 to 75626531 1553 CpG island CpG island 22049
Tssr86181 9 75625399 to 75625420 21 + TSS region transcription start site region 86181
Tssr86182 9 75625707 to 75625770 63 + TSS region transcription start site region 86182
Lysmd2 9 75625741 to 75637771 12030 + protein coding gene LysM, putative peptidoglycan-binding, domain containing 2
Tssr86183 9 75625842 to 75625885 43 + TSS region transcription start site region 86183
Tssr86184 9 75625967 to 75625981 14 + TSS region transcription start site region 86184
Tssr86185 9 75626136 to 75626179 43 + TSS region transcription start site region 86185
D9Dcr12 9 75640183 to 75640293 110 DNA segment DNA segment, Chr 9, Derry C. Roopenian 12
D9Mit263 9 75640192 to 75640288 96 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 263
Tssr90564 9 75642111 to 75642123 12 - TSS region transcription start site region 90564
Tssr90565 9 75642244 to 75642259 15 - TSS region transcription start site region 90565
Tssr90566 9 75642310 to 75642326 16 - TSS region transcription start site region 90566
Scg3 9 75643189 to 75684056 40867 - protein coding gene secretogranin III
Tssr90567 9 75643221 to 75643237 16 - TSS region transcription start site region 90567
Gm37871 9 75666652 to 75667339 687 + unclassified gene predicted gene, 37871
Tssr90568 9 75683349 to 75683357 8 - TSS region transcription start site region 90568
Cpgi22050 9 75683640 to 75684317 677 CpG island CpG island 22050
Tssr90569 9 75683847 to 75683855 8 - TSS region transcription start site region 90569
Tssr90570 9 75683909 to 75683914 5 - TSS region transcription start site region 90570
Tssr90571 9 75683971 to 75683989 18 - TSS region transcription start site region 90571
Tssr90572 9 75683992 to 75684046 54 - TSS region transcription start site region 90572
Tssr90573 9 75684074 to 75684083 9 - TSS region transcription start site region 90573
Gm3671 9 75693653 to 75694659 1006 - pseudogene predicted gene 3671
Gm39373 9 75763525 to 75769160 5635 + lncRNA gene predicted gene, 39373
Tssr86186 9 75775355 to 75775378 23 + TSS region transcription start site region 86186
Bmp5 9 75775364 to 75900310 124946 + protein coding gene bone morphogenetic protein 5
In(9Bmp5-Myo6)5Rl 9 75775364 to 80311729 4536365 chromosomal inversion inversion, Chr 9, Russell 5
Tssr86187 9 75775668 to 75775687 19 + TSS region transcription start site region 86187
Tssr86188 9 75775694 to 75775715 21 + TSS region transcription start site region 86188
El1 9 114474379 to 75775364 -38699015 QTL epilepsy 1
El7 9 114474379 to 75775364 -38699015 QTL epilepsy 7